Natural speciation of Ni, Zn, Ba, and As in ferromanganese coatings on quartz using X-ray fluorescence, absorption, and diffraction

The mineralogy of natural ferromanganese coatings on quartz grains and the crystal chemistry of associated trace elements Ni, Zn, Ba, and As were characterized by X-ray microfluorescence, X-ray diffraction, and EXAFS spectroscopy. Fe is speciated as ferrihydrite and Mn as vernadite. The two oxides form alternating Fe- and Mn-rich layers that are irregularly distributed and not always continuous. Unlike naturally abundant Fe-vernadite, in which Fe and Mn are mixed at the nanoscale, the ferrihydrite and vernadite are physically segregated and the trace elements clearly partitioned at the microscopic scale. Vernadite consists of two populations of interstratified one-water layer (7 Å phyllomanganate) and two-water layer (10 Å phyllomanganate) crystallites. In one population, 7 Å layers dominate, and in the other 10 Å layers dominate. The three trace metals Ni, Zn, and Ba are associated with vernadite and the metalloid As with ferrihydrite. In vernadite, nickel is both substituted isomorphically for Mn in the manganese layer and sorbed at vacant Mn layer sites in the interlayer. The partitioning of Ni is pH-dependent, with a strong preference for the first site at circumneutral pH and for the second at acidic pH. Thus, the site occupancy of Ni in vernadite may be an indicator of marine vs. continental origin, and in the latter, of the acidity of streams, lakes, or soil pore waters in which the vernadite formed. Zinc is sorbed only in the interlayer at vacant Mn layer sites. It is fully tetrahedral at a Zn/Mn molar ratio of 0.0138, and partly octahedral at a Zn/Mn ratio of 0.1036 consistent with experimental studies showing that the ^VIZn/^IVZn ratio increases with Zn loading. Barium is sorbed in a slightly offset position above empty tetrahedral cavities in the interlayer. Arsenic tetrahedra are retained at the ferrihydrite surface by a bidentate-binuclear attachment to two adjacent iron octahedra, as commonly observed. Trace elements in ferromanganese precipitates are partitioned at a few, well-defined, crystallographic sites that have some elemental specificity, and thus selectivity. The relative diversity of sorption sites contrasts with the simplicity of the layer structure of vernadite, in which charge deficit arises only from Mn⁴⁺ vacancies (i.e., no Mn³⁺ for Mn⁴⁺ substitution). Therefore, sorption mechanisms primarily depend on physical and chemical properties of the sorbate and competition with other ions in solution, such as protons at low pH for Ni sorption.     

Nickel geochemistry of a Philippine laterite examined by bulk and microprobe synchrotron analyses

The Ni geochemistry of limonite and saprolite laterite ores from Pujada in the Philippines has been investigated using a mixture of laboratory and synchrotron techniques. Nickel laterite profiles are typically composed of complicated mineral assemblages, with Ni being distributed heterogeneously at the micron scale, and thus a high degree of spatial resolution is required for analysis. This study represents the first such analysis of Philippine laterite ores. Synchrotron bulk and microprobe X-ray absorption spectroscopy (XAS), comprising both X-ray absorption near edge structure (XANES) and extended X-ray absorption fine structure (EXAFS) spectroscopies, together with synchrotron microprobe X-ray fluorescence microscopy (XFM) and diffraction (XRD) have been applied to provide quantitative analysis of the mineral components and Ni speciation.Synchrotron microprobe EXAFS spectroscopy suggests that the limonite Ni is associated with phyllomanganate via adsorption onto the Mn oxide layers and substitution for Mn within these layers. Laboratory scanning electron microscopy, coupled to electron dispersive spectroscopy analyses, indicates that Ni is also associated with concentrated Fe containing particles and this is further confirmed by synchrotron bulk and microprobe investigation. Linear combination fitting of the bulk EXAFS limonite data suggests 60 ± 15% of the Ni is associated with phyllomanganate, with the predominant fraction adsorbed above vacancies in the MnO₆ layers with the remainder being substituted for Mn within these layers. The remaining 40 ± 10% of the Ni in the limonite ore is incorporated into goethite through replacement of the Fe. In the saprolite ore, 90 ± 23% of the Ni is associated with a serpentine mineral, most likely lizardite, as a replacement for Mg. The remaining Ni is found within phyllomanganate adsorbed above vacancies in the MnO₆ layers.     

Evolution of mineral–fluid interfaces studied at pressure with synchrotron X-ray techniques

In situ measurements of mineral surface evolution during the process of pressure solution are possible with the high brightness of synchrotron X-ray sources. This capability has been explored through the use of newly developed reaction vessels that allow transmission of the incident and scattered X-ray beam through a low atomic weight piston. Several new vessels are described, along with details of computational algorithms that are used to simulate X-ray scattering in this unconventional geometry. Results using calcite (CaCO₃) and halite (NaCl) as reactant crystals are presented and compared to other atomic-scale measurements of surface dissolution processes. Calcite was reacted with an unsaturated fluid at 30 bars of pressure for approximately 24 h. During reaction the root mean square surface roughness (σ) evolved from 13.7 Å (± 0.5 Å) to 19.5 Å (± 1.0 Å), giving a roughening rate of: dσ/dt = +6.3 × 10^− 5 Å s^− 1. This is consistent with other measurements made with free calcite surfaces and is driven almost entirely by chemical disequilibrium. Analysis of the surface ex situ post-reaction gives an identical σ value, showing that the in situ measurements are well-constrained. Experiments also at 30 bars but in a saturated solution indicate that the calcite surface does not significantly roughen, giving the result that pressure solution of calcite at this pressure cannot be monitored in experiments of several days duration. Experiments with halite, a much more reactive phase, in saturated solutions showed the reflectivity profile to be dynamic on a time scale of hours. This experiment was left to reach equilibrium over 108 days and then re-analyzed, showing that σ had increased from 34 Å (± 2 Å) to 41 Å (± 2 Å), giving a roughening rate of: dσ/dt ≤ +6.4 × 10^− 7 Å s^− 1. This is two orders of magnitude smaller than the calcite roughening rate caused by chemical disequilibrium and provides the first direct in situ atomic-scale measurement of the rate of surface roughening due to pressure solution.     

Structure of heavy metal sorbed birnessite. Part III: Results from powder and polarized extended X-ray absorption fine structure spectroscopy

The local structures of divalent Zn, Cu, and Pb sorbed on the phyllomanganate birnessite (Bi) have been studied by powder and polarized extended X-ray absorption fine structure (EXAFS) spectroscopy. Metal-sorbed birnessites (MeBi) were prepared at different surface coverages by equilibrating at pH 4 a Na-exchanged buserite (NaBu) suspension with the desired aqueous metal. Me/Mn atomic ratios were varied from 0.2% to 12.8% in ZnBi and 0.1 to 5.8% in PbBi. The ratio was equal to 15.6% in CuBi. All cations sorbed in interlayers on well-defined crystallographic sites, without evidence for sorption on layer edges or surface precipitation. Zn sorbed on the face of vacant layer octahedral sites (□), and shared three layer oxygens (O_layer) with three-layer Mn atoms (Mn_layer), thereby forming a tridentate corner-sharing (TC) interlayer complex (Zn-3O_layer-□-3Mn_layer). ^TCZn complexes replace interlayer Mn²⁺ (Mn_inter²⁺) and protons. ^TCZn and ^TCMn_inter³⁺ together balance the layer charge deficit originating from Mn_layer⁴⁺ vacancies, which amounts to 0.67 charge per total Mn according to the structural formula of hexagonal birnessite (HBi) at pH 4. At low surface coverage, zinc is tetrahedrally coordinated to three O_layer and one water molecule (^[IV]TC complex: (H₂O)-^[IV]Zn-3O_layer). At high loading, zinc is predominantly octahedrally coordinated to three O_layer and to three interlayer water molecules (^[VI]TC complex: 3(H₂O)-^[VI]Zn-3O_layer), as in chalcophanite (^[VI]ZnMn₃⁴⁺O₇·3H₂O). Sorbed Zn induces the translation of octahedral layers from −a/3 to +a/3, and this new stacking mode allows strong H bonds to form between the ^[IV]Zn complex on one side of the interlayer and oxygen atoms of the next Mn layer (O_next): O_next…(H₂O)-^[IV]Zn-3O_layer. Empirical bond valence calculations show that O_layer and O_next are strongly undersaturated, and that ^[IV]Zn provides better local charge compensation than ^[VI]Zn. The strong undersaturation of O_layer and O_next results not only from Mn_layer⁴⁺ vacancies, but also from Mn³⁺ for Mn⁴⁺ layer substitutions amounting to 0.11 charge per total Mn in HBi. As a consequence, ^[IV]Zn,Mn_layer³⁺, and Mn_next³⁺ form three-dimensional (3D) domains, which coexist with chalcophanite-like particles detected by electron diffraction. Cu²⁺ forms a Jahn-Teller distorted ^[VI]TC interlayer complex formed of two oxygen atoms and two water molecules in the equatorial plane, and one oxygen and one water molecule in the axial direction. Sorbed Pb²⁺ is not oxidized to Pb⁴⁺ and forms predominantly ^[VI]TC interlayer complexes. EXAFS spectroscopy is also consistent with the formation of tridentate edge-sharing (^[VI]TE) interlayer complexes (Pb-3O_layer-3Mn), as in quenselite (Pb²⁺Mn³⁺O₂OH). Although metal cations mainly sorb to vacant sites in birnessite, similar to Zn in chalcophanite, EXAFS spectra of MeBi systematically have a noticeably reduced amplitude. This higher short-range structural disorder of interlayer Me species primarily originates from the presence of Mn_layer³⁺, which is responsible for the formation of less abundant interlayer complexes, such as ^[IV]Zn TC in ZnBi and ^[VI]Pb TE in PbBi.     

The distribution of elements between co-existing phases in some marine ferromanganese-oxide deposits

Analyses of ferromanganese oxides from the Indian and Atlantic Oceans for the elements Mn, Fe, Co, Ni, Cu, Zn, Pb, Ca, AI, Ti, Cr and Cd have helped to elucidate some of the controls on their geochemistry. In most samples virtually all of the Mn and much of the Fe are present as acid-reducible phyllomanganates and Fe oxyhydroxides respectively. By contrast, in samples in which goethite was identified, much of the Fe and significant amounts of the Mn. are not acid-reducible. The partition patterns of the minor elements reflect to varying extents the mineralogy of the hydrous Mn and Fe oxide phases. In δ-Mn-O₂-rich samples the ratio of adsorbed to crystallographically-bound Ni. Cu and Zn, is higher than in todorokite-rich samples, but in each case these metals are virtually entirely phyllomanganate-associated. In goethite-rich samples, however, significant amounts of Ni. Cu and Zn may be associated with the goethite itself rather than with phyllomanganate minerals. Cobalt shows very close association with the phyllomanganates irrespective of the specific mineralogy, but Pb behaves in a way which cannot yet be fully characterised. The non-reducible fractions of the samples contain most of the Ca, Al. Ti and Cr. Some Ca however is also present in the phyllomanganates.     

X-ray absorption spectroscopy study of Cu and Zn adsorption complexes at the calcite surface: Implications for site-specific metal incorporation preferences during calcite crystal growth

We report results from in situ extended X-ray absorption fine structure (EXAFS) spectroscopy studies of Cu(II) and Zn(II) complexes forming at the calcite surface following adsorption from preequilibrated calcite-saturated solutions. Both Cu(II) and Zn(II) coordinate at Ca sites on the calcite surface, forming mononuclear inner-sphere adsorption complexes. The Zn adsorption complexes are in tetrahedral coordination with first-shell O neighbors with R_Zn-O = 1.95 Å, and the Cu complexes are Jahn-Teller distorted, with equatorial R_Cu-O = 1.95 Å. Results from EXAFS data of dilute Cu- and Zn-calcite solid solutions confirm substitution of these metals in the Ca site of the calcite structure as octahedral complexes during coprecipitation. X-ray fluorescence microanalyses of calcite (101?4) hillocks grown in coprecipitation experiments show that divalent Cu and Zn, which have ionic radii smaller than Ca, are preferentially incorporated into the parallel arrays of <4?41>₊ steps that define one pair of symmetrically equivalent vicinal faces on polygonized growth spirals. In contrast, other divalent metals with sixfold ionic radii smaller than Ca (Co, Cd, Mn, Mg) have been shown to be preferentially incorporated into <4?41>₋ growth steps, which define the second pair of vicinal faces on the growth spirals, but which are symmetrically nonequivalent to the steps on the first pair. The distortion from octahedral symmetry observed for the Cu and Zn adsorption complexes likely plays a key role in the observed preference of Cu and Zn for incorporation into the <4?41>₊ steps.     

Zinc surface complexes on birnessite: A density functional theory study

Biogeochemical cycling of zinc is strongly influenced by sorption on birnessite minerals (layer-type MnO₂), which are found in diverse terrestrial and aquatic environments. Zinc has been observed to form both tetrahedral (Zn^IV) and octahedral (Zn^VI) triple-corner-sharing surface complexes (TCS) at Mn(IV) vacancy sites in hexagonal birnessite. The octahedral complex is expected to be similar to that of Zn in the Mn oxide mineral, chalcophanite (ZnMn₃O₇·3H₂O), but the reason for the occurrence of the four-coordinate Zn surface species remains unclear. We address this issue computationally using spin-polarized density functional theory (DFT) to examine the Zn^IV-TCS and Zn^VI-TCS species. Structural parameters obtained by DFT geometry optimization were in excellent agreement with available experimental data on Zn-birnessites. Total energy, magnetic moments, and electron overlap populations obtained by DFT for isolated Zn^IV-TCS revealed that this species is stable in birnessite without a need for Mn(III) substitution in the octahedral sheet and that it is more effective in reducing undersaturation of surface O at a Mn vacancy than is Zn^VI-TCS. Comparison between geometry-optimized ZnMn₃O₇·3H₂O (chalcophanite) and the hypothetical monohydrate mineral, ZnMn₃O₇·H₂O, which contains only tetrahedral Zn, showed that the hydration state of Zn significantly affects birnessite structural stability. Finally, our study also revealed that, relative to their positions in an ideal vacancy-free MnO₂, Mn nearest to Zn in a TCS surface complex move toward the vacancy by 0.08-0.11 Å, while surface O bordering the vacancy move away from it by 0.16-0.21 Å, in agreement with recent X-ray absorption spectroscopic analyses.     

Physiochemical controls on the crystal-chemistry of Ni in birnessite: Genetic implications for ferromanganese precipitates

Sorption of Ni to birnessite is a fundamental control on the concentration of Ni in natural waters and associated sediments. Recent XAS work suggests the crystal-chemistry of Ni in birnessite is dependent on both structural and physiochemical factors. This work investigates the physiochemical controls on Ni crystal-chemistry in hexagonal birnessite with EXAFS of time series and pH series Ni-birnessite sorption experiments. At circumneutral pH Ni surface adsorbed above/below Mn octahedral vacancy sites in the phyllomanganate layers is progressively structurally incorporated into the vacancy sites with time (30% Ni incorporation after 408 h contact time). Ni structural incorporation into hexagonal birnessite occurs via rearrangement of surface adsorbed Ni with time rather than direct Ni incorporation from solution. At low pH (pH 4) Ni surface adsorbed at the vacancies is structurally incorporated into the vacancies upon increasing solution pH to circumneutral (∼20% Ni incorporation after 24 h contact time at circumneutral pH); newly incorporated Ni is stable with increasing contact time at pH circumneutral. However, upon decreasing solution pH from circumneutral back to pH 4, EXAFS shows a significant decrease in the proportion of Ni structurally incorporated; preliminary results indicate structural incorporation of Ni in hexagonal birnessite is reversible with decreasing pH. Time series results at circumneutral pH help explain the significant enrichment of Ni in marine ferromanganese precipitates; work here is combined with previous studies to provide a model correct at the molecular-level for Ni uptake by marine vernadite-rich ferromanganese precipitates. With Ni migrating from surface adsorbed to structurally incorporated, results suggest formation of a solid solution between an end-member vernadite and an end-member Ni-vernadite phase, with surface adsorption acting as a mechanism of transition from one composition to the other. pH series results call into question the viability of Ni crystal-chemistry in natural vernadite as a paleo-proxy for paleo-pH conditions in freshwater systems and challenge the traditional view that structurally incorporated trace-metals are stable within the Eh-pH field of the host mineral phase. Natural birnessite may not be as permanent a sink for Ni as first suggested by Ni crystal-chemistry.     

黑钨矿中微量元素的赋存状态葠带状构造

本文应用扫描电镜、X射线衍射(粉晶)分析、电子探针、化学分析、原子吸收光谱分析等手段研究了大吉山和瑶岗仙脉状钨矿床中黑钨矿微量元素的赋存状态、含量以及Nb、Ta在矿物中的“置换容量”等问题。大吉山6号脉及瑶岗仙501号脉黑钨矿单晶具有带状构造,结合各带的成分特点,讨论了具带状构造黑钨矿的形成条件及其成因意义。     

Nanostructure, composition and mechanisms of bivalve shell growth

Freshwater and marine cultured pearls form via identical processes to the shells of bivalves and can therefore serve as models for the biomineralization of bivalve shells in general. Their nanostructure consists of membrane-coated granules (vesicles) which contain amorphous calcium carbonate (ACC) at the beginning of the biomineralization sequence, preceding the crystallization of aragonite and vaterite. In contrast to the commonly accepted view, crystallization of ACC occurs rapidly and within the granular nano-compartments mediated by organic molecules much earlier than platelet formation. The interlamellar organic sheets in nacre that form the platelet structure of nacre themselves form by self-organization after the crystallization process of CaCO₃ is completed and, thus, cannot serve as a nucleation template for aragonite. Pores in the organic sheets are postulated to be a result of this process rather than to represent the pathways for CaCO₃ through pre-existing interlamellar sheets. The amorphous phase has the highest concentrations of Mg (5.8 mol%), Mn (6.6 mol%), S (4.7 mol%) and P (1 mol%) of the three CaCO₃-polymorphs. Mg/Ca and Mn/Ca ratios are found to decrease in the order ACC > vaterite > aragonite, corresponding to decreasing organic content in the different phases. This, as well as an observed enrichment of Mg in the organic-rich growth-banding of the pearls, suggests an at least partially organic speciation of Mg and Mn in bivalves and may be responsible for the observed physiological influence on Mg/Ca and Mn/Ca ratios in bivalves as a proxy for environmental parameters.     

氧化锰矿物的生物成因及其性质的研究进展

土壤中的氧化锰矿物是原生矿物风化和成土过程的产物,是最具反应活性的一类矿物,决定着环境中许多物质的形态、迁移和转化,在元素生物地球化学循环中起着重要的作用,其形成机制和环境效应备受关注。已有的研究表明,环境中氧化锰的形成与微生物作用紧密相关,微生物作用可使自然环境中的Mn(Ⅱ)氧化速率提高105倍。参与Mn(Ⅱ)氧化的微生物在环境中广泛存在,已知的典型锰氧化细菌分布在变形菌门、放线菌门或厚壁菌门,它们均通过胞外聚合物中的多铜氧化酶来催化氧化Mn(Ⅱ)。细菌氧化Mn(II)成Mn(Ⅳ)是酶催化的两个连续的快速单电子传递过程,Mn(Ⅲ)在溶液中以与酶结合的瞬时中间态出现。生物形成氧化锰的最初形态为层状锰矿物,与δ-MnO2或酸性水钠锰矿很类似,且结晶弱,粒径小,锰氧化度高,结构中的八面体空穴多,因而比化学形成的氧化锰具有更强的吸附、氧化等表面活性。环境中Mn(Ⅱ)微生物氧化及形成的Mn(Ⅲ)中间体与碳、氮、硫等生命元素的地球化学循环的关系令人关注。     

Ba and Ni speciation in a nodule of binary Mn oxide phase composition from Lake Baikal

The partitioning and incorporation mechanism of Ni and Ba in a ferromanganese nodule from Lake Baikal were characterized by X-ray microfluorescence, microdiffraction, and absorption spectroscopy. Fe is speciated as goethite, and Mn as romanechite (psilomelane) and 10 Å-vernadite (turbostratic buserite) with minor 7 Å-vernadite (turbostratic birnessite). Barium is associated with romanechite and Ni with vernadite in distinct and irregularly distributed layers, and each type of Mn oxide is separated from the other type by goethite. The binary Mn oxide banding pattern is interpreted by a two-mode accretionary model, in which the variation in Ba flux induced by hydrothermal water pulses determines whether a tectomanganate (romanechite) or phyllomanganate (vernadite) is formed during the ferromanganese nodule accretion. Consistent with the dependence of Ni sorption on pH and the circumneutral pH of the lake water, nickel is mainly substituted isomorphically for Mn in the manganese layer, and is not sorbed at vacant Mn layer sites in the interlayer.     

海水化学演化对生物矿化的影响综述

显生宙非骨屑碳酸盐矿物经历了文石海和方解石海的交替,主要造礁生物和沉积物生产者的骨骼矿物与非骨屑碳酸盐矿物具有同步变化的趋势。这种长期的变化趋势可以用海水化学Mg/Ca摩尔比的变化来解释。流体包裹体、同位素和微量元素等证据也证实了海水化学在地质历史中经历过剧烈的变化。虽然生物诱导矿化和生物控制矿化的相对重要性一直存在争议,但古生物地层记录和人工海水养殖实验结果都表明,海水化学演化对生物矿化有重要的影响,体现在造礁生物群落的兴衰、生物起源时对骨骼矿物类型的选择以及微生物碳酸盐岩在地质历史中的分布等。这些为研究前寒武纪海水化学演化、古气候和古环境的重建、同位素地层对比以及碳酸盐的沉积和成岩等问题提供了新的思路。     

Formation of todorokite from vernadite in Ni-rich hemipelagic sediments

Todorokite is considered to form from vernadite in nature and commonly concentrates nickel. However, this mineralogical transformation has never been imaged nor explained mechanistically, and its effect on the uptake of nickel has never been quantified at the molecular-level. We have characterized these reactions at the macroscopic, microscopic, nanoscopic and atomic scales in a marine manganese concretion by combining transmission electron microscopy, electron and X-ray microprobe analysis, powder and micro X-ray diffraction, and Mn and Ni K-edge EXAFS spectroscopy. The concretion was collected during the Ticoflux II expedition near the Nicoya Peninsula, Costa Rica, and is representative of Mn deposits in hemipelagic sediments. It consists of 5 to 25 μm aggregates, shaped like sea-urchins, with a core of 7Å-vernadite (1.0 wt% Ni), a rim of 10Å-vernadite (3.8 wt% Ni), and an outermost region of todorokite fibers (1.9 wt% Ni) that extend outwards. The crystallites of 7Å-vernadite are single- to bi-layered, with hexagonal layer symmetry (a = b = 2.83 Å), and an average structural formula of . The crystallites of 10Å-vernadite contain 10 to 20 layers semi-coherently stacked in the ab plane and uniformly separated in the [0 0 1] direction by ∼9 Å due to the intercalation of hydrated Mg²⁺ cations. The average structural formula of 10Å-vernadite is if the layers contain vacancy sites, or alternately , if they contain Mn³⁺. The average formula of todorokite is .A genetic model is proposed based on combining these new data with previously published results. The thermodynamically unstable 7Å-vernadite transforms via dissolution-recrystallization to semi-ordered Mg-rich 10Å-vernadite. Nickel is released from dissolved biogenic silica or reduced organic matter, and taken up mainly in the Mn layer of 10Å-vernadite. Interlayer magnesium serves as a template to the further topotactic transformation of 10Å-vernadite to todorokite. The dimension of the todorokite tunnels in the [0 0 1] direction is uniform and determined by the size of the hydrated Mg²⁺ ion (8.6 Å). The tunnel dimension in the [1 0 0] direction depends on the density of Mg²⁺ in the interlayer and the superstructure of the phyllomanganate layer. If the parent phyllomanganate contains high amounts of Mg²⁺ (i.e., high layer charge), or Mn³⁺ and Mn⁴⁺ cations ordered following the Mn³⁺-Mn⁴⁺-Mn⁴⁺ sequence as in synthetic triclinic birnessite, then the tunnel dimension is ideally 3 × 3 octahedral chain widths in both crystallographic directions. Otherwise, the tunnel dimension is incoherent in the [1 0 0] direction (i.e., T(3,n) tunnel structure), as has been observed in all natural todorokites. Natural todorokite is defective because the precursor natural phyllomanganates either have a layer charge deficit below 0.33e per octahedral site, or rarely are triclinic birnessite. The abundance of Mg in seawater and its key role in converting phyllomanganate to tectomanganate with T(3,n) tunnel structure explain why todorokite is common in marine ferromanganese oxides, and seldom present in terrestrial environments. The topotactic phase transformation described here is the only known route to todorokite crystallization. This implies that all natural todorokites may be authigenic because they are formed in situ from a phyllomanganate precursor.     

Zinc sorption to biogenic hexagonal-birnessite particles within a hydrated bacterial biofilm

Biofilm-embedded Mn oxides exert important controls on trace metal cycling in aquatic and soil environments. The speciation and mobility of Zn in particular has been linked to Mn oxides found in streams, wetlands, soils, and aquifers. We investigated the mechanisms of Zn sorption to a biogenic Mn oxide within a biofilm produced by model soil and freshwater Mn^II-oxidizing bacteria Pseudomonas putida. The biogenic Mn oxide is a c-disordered birnessite with hexagonal layer symmetry. Zinc adsorption isotherm and Zn and Mn K-edge extended X-ray absorption fine structure (EXAFS) spectroscopy experiments were conducted at pH 6.9 to characterize Zn sorption to this biogenic Mn oxide, and to determine whether the bioorganic components of the biofilm affect metal sorption properties. The EXAFS data were analyzed by spectral fitting, principal component analysis, and linear least-squares fitting with reference spectra. Zinc speciation was found to change as Zn loading to the biosorbent [bacterial cells, extracellular polymeric substances (EPS), and biogenic Mn oxide] increased. At low Zn loading (0.13 ± 0.04 mol Zn kg⁻¹ biosorbent), Zn was sorbed to crystallographically well-defined sites on the biogenic oxide layers in tetrahedral coordination to structural O atoms. The fit to the EXAFS spectrum was consistent with Zn sorption above and below the Mn^IV vacancy sites of the oxide layers. As Zn loading increased to 0.72 ± 0.04 mol Zn kg⁻¹ biosorbent, Zn was also detected in octahedral coordination to these sites. Overall, our results indicate that the biofilm did not intervene in Zn sorption by the Mn-oxide because sorption to the organic material was observed only after all Mn vacancy sites were capped by Zn. The organic functional groups present in the biofilm contributed significantly to Zn removal from solution when Zn concentrations exceeded the sorption capacity of the biooxide. At the highest Zn loading studied, 1.50 ± 0.36 mol Zn kg⁻¹ biosorbent, the proportion of total Zn sorption attributed to bioorganic material was 38 mol%. The maximum Zn loading to the biogenic oxide that we observed was 4.1 mol Zn kg⁻¹ biogenic Mn oxide, corresponding to 0.37 ± 0.02 mol Zn mol⁻¹ Mn. This loading is in excellent agreement with previous estimates of the content of cation vacancies in the biogenic oxide. The results of this study improve our knowledge of Zn speciation in natural systems and are consistent with those of Zn speciation in mineral soil fractions and ferromanganese nodules where the Mn oxides present are possibly biogenic.     

Crystal Chemistry Research of Minerals of Nigerite Group and Its Significance

SinceJacobsonandWebb (194 7)firstlyfoundthenigeriteinNigeria ,mineralogistshavefounditinmanycountriessuchasRussia (EastSiberia ,195 8) ,China(Hunan ,196 3) ,Portugal (196 5 ) ,Australia (1976 )andsoon .Greyetal.(1979)determinedaccuratelythecrystalstructureofnigerite (2 4R) .In 1988,Chenfoundakindofendmembermineralofnigerite ,whichisMg riched .ByapprovingofCommissiononNewMineralsandMineralNames (CNMMN) ,thismineralwasnamedpengzhizhongite .Inthepast ,somemineralogistsdidnotfurtherdis t…     

模拟表生环境水钠锰矿亚结构转化及钙锰矿的形成

水钠锰矿是土壤与沉积物中最为常见的氧化锰矿物, 依据其MnO₆层对称特点分为六方和三斜两种亚结构类型.六方水钠锰矿在表生环境中可通过Mn2+的化学或生物氧化形成, 而环境中三斜水钠锰矿的形成及进一步转化为钙锰矿的途径尚不清楚.以两种六方水钠锰矿(酸性水钠锰矿和水羟锰矿)为前驱物, 采用X射线吸收光谱(EXAFS)、X射线衍射(XRD)、电镜(FESEM/TEM)及化学组成分析等技术方法模拟表生环境研究了水钠锰矿从六方向三斜的亚结构转化及生成钙锰矿的化学条件和矿物学机制.结果表明, 适当Mn(Ⅱ)浓度和弱碱性条件(pH≥8)可使六方水钠锰矿逐渐转化为三斜水钠锰矿, 继而经Mg2+交换、常压回流得到了长纤维状的钙锰矿, 其晶体生长以溶解-结晶为主.Mn(Ⅱ)与六方水钠锰矿MnO₆八面体层内的Mn(Ⅳ)反应生成Mn(Ⅲ)并填充层内空位, 使水钠锰矿对称型由六方向三斜转变.与酸性水钠锰矿相比, 水羟锰矿结晶弱、层状堆积混乱度高, 与Mn(Ⅱ)反应迅速, 层结构向三斜水钠锰矿转化快.pH升高, 促进六方水钠锰矿对Mn(Ⅱ)的吸附和Mn(Ⅱ)与Mn(Ⅳ)间的反应, 六方水钠锰矿转化为三斜水钠锰矿的速率加快."六方水钠锰矿→三斜水钠锰矿"可能是环境中三斜水钠锰矿的重要来源, 及进一步形成钙锰矿的重要化学生成机制.      

Geochemical and Microbiological Analysis of Sambe Hot Springs,Shimane Prefecture,Japan

Microbiological contribution to the formation of the manganese deposits in Sambe hot springs, Shimane, was investigated in combination with water chemistry, characterization of sediments and microbial community structure. Analysis of bacterial and fungal community structure based on DNA extracted from a Mn‐oxidizing enrichment culture indicated close matches with Pseudomonas putida, Phoma sp. and Plectosphaerella cucumerina, all Mn‐oxidizing microorganisms. These sediments were poorly crystalline and formed at neutral pH values, which is characteristic of biogenic precipitates. The EPMA results demonstrated a positive correlation between Mn and Ba contents in well‐crystalline Mn oxide grains. Substantial Ba contents were observed inside Mn oxide grains. These findings indicated that Ba contents in sediments are influenced by not only aqueous Ba²⁺ concentrations but also crystallinity of biogenic birnessite. Barium would be incorporated in birnessite during biomineralization.     

Sorption of heavy metal ions by a hydrous manganese oxide

Sorption of Co, Zn, Ca and Na by δ-MnO₂ was studied at 24.0 ± 0.5°C and pH 4. During the sorption of Co and Zn, Mn was released to the solution phase; however, Mn release was not detected during the sorption of Ca and Na. On the basis of crystal field theory, it is proposed that Zn may interchange with Mn²⁺ in the δ-MnO₂ structure, whereas Co may interchange with both Mn²⁺ and Mn³⁺. It is suggested that the interchangeable Mn²⁺ and Mn³⁺ sites were in the disordered layers in the δ-MnO₂ structure.Sorption of Co, Zn and Ca at pH 4 fitted single-site Langmuir isotherm expressions at all Ca concentrations, but only at concentrations greater than 10^?4 M for Co and Zn. Mn release by δ-MnO₂ at pH 4 during Co and Zn sorption also fitted single-site Langmuir isotherms. An expression for the case of multisite Langmuir sorption was derived and applied to the cases of Co and Zn sorption and to the case of Mn release during Co sorption. The data of these cases were used to calculate statistically the coefficients of multiple regression equations from which the sum of the capacities of all sites in each case were obtained. From all of these derived capacities, it is proposed that there was only one site where Ca interchanged with surface bound H. Zn was postulated to interchange not only with these bound H sites, but also with another site where it interchanged with structural Mn²⁺. Co was postulated to interchange with both of these sites, and additionally, with a third site where it interchanged with structural Mn³⁺.Using a pH-stat set at pH 4, it was determined that approximately 2 moles of H were released per mole of Co or Zn sorbed at bound H sites.     

The role of grain dissolution and diagenetic mineral precipitation in the cycling of metals and phosphorus: A study of a contaminated urban freshwater sediment

This paper describes the detrital mineralogy, early diagenetic reactions and authigenic mineral precipitates for freshwater contaminated sediments deposited in an urban water body (the Salford Quays of the Manchester Ship Canal, Greater Manchester, UK). These sediments contain a mix of natural and anthropogenic detrital grains. Detrital grains are dominated by quartz and clay grains, whilst anthropogenic grains are dominated by metal-rich glass grains, concentrated at a depth of 12–17 cm in the sediment as a result of historical inputs. Sediment porewaters contain significant concentrations of Fe, Mn, Zn and phosphate. Bacterial Fe(III) and Mn(IV) reduction are hypothesised to supply Fe²⁺ and Mn²⁺ to porewaters, with phosphate released from Fe oxide reduction or organic matter oxidation. Petrographic observations indicate that the metal-rich glass grains are undergoing chemical dissolution during early diagenesis, supplying Fe and Zn to porewaters.