Fluxes and exchange of suspended sediment in tidal inlets draining a degraded mangrove forest in Kenya

This study focuses on sediment exchange in the degraded Mwache mangrove forest wetland located in southern Kenya. It involved measurement of total and particulate organic suspended sediment concentrations (TSSC and POSC), tidal water elevation and current velocities. Results showed that in the heavily degraded backwater zone mangrove forest, the ebb and flood tide total sediment fluxes were of same order of magnitude, however, flood tide sediment fluxes were slightly higher than the ebb ones. In the moderately degraded frontwater zone mangrove forest, the flood tide sediment fluxes were more than 50% higher than the ebb tide fluxes. The peak net sedimentation in the highly degraded backwater zone was 4 g m⁻² tide⁻¹ but that in the moderately degraded frontwater zone was 63 g m⁻² tide⁻¹. In the frontwater zone of the mangrove forest, the peak instantaneous ebb tide sediment flux was 3206 kg tide⁻¹ equivalent to 35.6 g m⁻² tide⁻¹ and the flood one 8574 kg tide⁻¹ (95 g m⁻² tide⁻¹). The peak instantaneous flood and ebb tide particulate organic sediment (POS) fluxes in the frontwater zone mangrove forest were 1316 kg tide⁻¹ (15 g m⁻² tide⁻¹) and 587 kg tide⁻¹ (6.5 g m⁻² tide⁻¹), respectively. The peak ebb and flood tide sediment fluxes in the backwater mangrove forest were 3206 kg tide⁻¹ (36 g m⁻² tide⁻¹) and 3305 kg tide⁻¹ (36.7 g m⁻² tide⁻¹), respectively. In case of POS fluxes in the backwater zone mangrove forest, the peak flood period POS flux was 969 kg tide⁻¹ (10.7 g m⁻² tide⁻¹) while the ebb period one was 484 kg tide⁻¹ (5.4 g m⁻² tide⁻¹). In both highly degraded backwater and moderately degraded frontwater zone of the mangrove forest, there is net import of sediments. However, the net import is relatively lower in the backwater zone forest where the trapping efficiency is 27%. In the moderately degraded frontwater zone of the mangrove forest, the sediment trapping efficiency is 65%. The net sediment import occurs mainly in periods of high river discharge in both neap and spring tides, but occurs only in spring tides during dry season. The net accretion rates in the backwater and frontwater zone mangrove forests are 0.25 and 3.5 cm year⁻¹, respectively.     

Total organic and inorganic carbon exchange through the Strait of Gibraltar in September 1997

The total organic carbon (TOC) and total inorganic carbon (C_T) exchange between the Atlantic Ocean and the Mediterranean Sea was studied in the Strait of Gibraltar in September 1997. Samples were taken at eight stations from western and eastern entrances of the Strait and at the middle of the Strait (Tarifa Narrows). TOC was analyzed by a high-temperature catalytic oxidation method, and C_T was calculated from alkalinity–pH_T pairs and appropriate thermodynamic relationships. The results are used in a two-layer model of water mass exchange through the Strait, which includes the Atlantic inflow, the Mediterranean outflow and the interface layer in between. Our observations show a decrease of TOC and an increase of C_T concentrations from the surface to the bottom: 71–132 μM C and 2068–2150 μmol kg⁻¹ in the Surface Atlantic Water, 74–95 μM C and 2119–2148 μmol kg⁻¹ in the North Atlantic Central Water, 63–116 μM C and 2123–2312 μmol kg⁻¹ in the interface layer, and 61–78 μM C and 2307–2325 μmol kg⁻¹ in the Mediterranean waters. However, within the Mediterranean outflow, we found that the concentrations of carbon were higher at the western side of the Strait (75–78 μM C, 2068–2318 μmol kg⁻¹) than at the eastern side (61–69 μM C, 2082–2324 μmol kg⁻¹). This difference is due to the mixing between the Atlantic inflow and the Mediterranean outflow on the west of the Strait, which results in a flux of organic carbon from the inflow to the outflow and an opposite flux of inorganic carbon. We estimate that the TOC input from the Atlantic Ocean to the Mediterranean Sea through the Strait of Gibraltar varies from (0.97±0.8)10⁴ to (1.81±0.90)10⁴ mol C s⁻¹ (0.3×10¹² to 0.56×10¹² mol C yr⁻¹), while outflow of inorganic carbon ranges from (12.5±0.4)10⁴ to (15.6±0.4)10⁴ mol C s⁻¹ (3.99–4.90×10¹² mol C yr⁻¹). The high variability of carbon exchange within the Strait is due to the variability of vertical mixing between inflow and outflow along the Strait. The prevalence of organic carbon inflow and inorganic carbon outflow shows the Mediterranean Sea to be a basin of active remineralization of organic material.     

Influence of sex and age on PCBs accumulation in the commercial fish Chelon labrosus

Thicklip grey mullet, Chelon labrosus, is an important commercial fish species and has been studied worldwide. However, no recent studies have been made regarding polychlorinated biphenyls (PCBs) in wild C. labrosus. Due to that, the concentration of 13 PCBs congeners was measured in muscles and livers, of males and females, of C. labrosus of different ages, allowing the estimation of PCB bioaccumulation throughout the species lifespan, in the Mondego estuary, a southern European temperate estuary. Male muscle sample concentrations ranged from 32 to 96 ng g^− 1 (lipid wt.) and in females from 32 to 62 ng g^− 1 (lipid wt.). In male liver sample concentrations ranged from 106 to 158 ng g^− 1 (lipid wt.), while female concentrations ranged from 88 to 129 ng g^− 1 (lipid wt.). The most abundant congeners presenting higher percentages in all samples were CB 138, 153 and 180. No significant differences were found between the concentrations in both sexes, but muscle and liver PCB concentrations in males tended to increase with age whereas in females concentrations remained stable throughout the species lifespan. Significant differences were found between concentrations in muscle and liver.     

Microbial biomass and viral infections of heterotrophic prokaryotes in the sub-surface layer of the central Arctic Ocean

Seawater samples were collected for microbial analyses between 55 and 235 m depth across the Arctic Ocean during the SCICEX 97 expedition (03 September–02 October 1997) using a nuclear submarine as a research platform. Abundances of prokaryotes (range 0.043–0.47×10⁹ dm⁻³) and viruses (range 0.68–11×10⁹ dm⁻³) were correlated (r=0.66, n=150) with an average virus:prokaryote ratio of 26 (range 5–70). Biomass of prokaryotes integrated from 55 to 235 m ranged from 0.27 to 0.85 g C m⁻² exceeding that of phytoplankton (0.005–0.2 g C m⁻²) or viruses (0.02–0.05 g C m⁻²) over the same depth range by an order of magnitude on average. Using transmission electron microscopy (TEM), we estimated that 0.5% of the prokaryote community on average (range 0–1.4%) was visibly infected with viruses, which suggests that very little of prokaryotic secondary production was lost due to viral lysis. Intracellular viruses ranged from 5 to >200/cell, with an average apparent burst size of 45±38 (mean±s.d.; n=45). TEM also revealed the presence of putative metal-precipitating bacteria in 8 of 13 samples, which averaged 0.3% of the total prokaryote community (range 0–1%). If these prokaryotes are accessible to protistan grazers, the Fe and Mn associated with their capsules might be an important source of trace metals to the planktonic food web. After combining our abundance and mortality data with data from the literature, we conclude that the biomass of prokaryoplankton exceeds that of phytoplankton when averaged over the upper 250 m of the central Arctic Ocean and that the fate of this biomass is poorly understood.     

Copper complexation by fulvic acid affects copper toxicity to the larvae of the polychaete Hydroides elegans

Copper toxicity is influenced by a variety of environmental factors including dissolved organic matter (DOM). We examined the complexation of copper by fulvic acid (FA), one of the major components of DOM, by measuring the decline in labile copper by anodic stripping voltammetrically (ASV). The data were described using a one-site ligand binding model, with a ligand concentration of 0.19 μmol site mg⁻¹ C, and a log K′ of 6.2. The model was used to predict labile copper concentration in a bioassay designed to quantify the extent to which Cu–FA complexation affected copper toxicity to the larvae of marine polychaete Hydroides elegans. The toxicity data, when expressed as labile copper concentration causing abnormal development, were independent of FA concentration and could be modeled as a logistic function, with a 48-h EC₅₀ of 58.9 μg l⁻¹. However, when the data were expressed as a function of total copper concentration, the toxicity was dependent on FA concentration, with a 48-h EC₅₀ ranging from 55.6 μg l⁻¹ in the no-FA control to 137.4 μg l⁻¹ in the 20 mg l⁻¹ FA treatment. Thus, FA was protective against copper toxicity to the larvae, and such an effect was caused by the reduction in labile copper due to Cu–FA complexation. Our results demonstrate the potential of ASV as a useful tool for predicting metal toxicity to the larvae in coastal environment where DOM plays an important role in complexing metal ions.     

A sediment and organic carbon budget for the greater Strait of Georgia

Recent efforts to construct global ocean budgets for carbon have recognized the importance of continental margins. In this study, we constructed budgets for the Strait of Georgia, a temperate, North American west coast basin that receives the inflow of one of the world's major rivers. Drawing from published and unpublished data, we have estimated the magnitude of the various sources and sinks of fresh water, sediment and organic carbon.The Fraser River is the dominant source of fresh water and particles to the strait, contributing approximately 73% of the 158×10⁹ m³ year⁻¹ of water and 64% of the 30×10⁹ kg year⁻¹ of particles. Other rivers supply most of the remainder, while rain, groundwater and anthropogenic sources of water and particles are negligible in comparison. Fresh water escapes the Strait of Georgia through Juan de Fuca Strait, but particulate inputs are approximately balanced by sedimentation within the greater Strait of Georgia, implying almost complete trapping of particles.Dissolved and particulate organic carbon are derived mainly from in situ primary production (855×10⁶ kg year⁻¹) and from the Fraser River (550×10⁶ kg year⁻¹). Other rivers contribute 200×10⁶ kg year⁻¹ of organic carbon, and anthropogenic sources (ocean dumping, sewage, pulp mills and aquaculture) a further 119×10⁶ kg year⁻¹. Particulate organic carbon is predominantly buried (428×10⁶ kg year⁻¹) or oxidized (90×10⁶ kg year⁻¹) in the sediments of the strait. About 70% of the organic carbon that enters or is produced in the strait is dissolved. Most of the dissolved organic carbon is oxidized within the strait (784×10⁶ kg year⁻¹), but the remainder (400×10⁶ kg year⁻¹) is exported to the Pacific Ocean. Although the particulate organic carbon budget by itself implies net autotrophy, dissolved organic carbon oxidation may make the Strait of Georgia slightly net heterotrophic.     

Time-series observation of POC fluxes estimated from 234Th in the northwestern North Pacific

Time-series measurements of ²³⁴Th activities and particulate organic carbon (POC) concentrations were made at time-series stations (K1, K2, K3, and KNOT) in the northwestern North Pacific from October 2002 to August 2004. Seasonal changes in POC export fluxes from the surface layer (∼100 m) were estimated using ²³⁴Th as a tracer. POC fluxes varied seasonally from approximately 0 to 180 mg C m⁻² d⁻¹ and were higher in spring–summer than in autumn–winter. The export ratio (e-ratio) ranged from 6% to 55% and was also higher in spring–summer. Annual POC fluxes were estimated to be 31 g C m⁻² y⁻¹ in the subarctic region (station K2) and 23 g C m⁻² y⁻¹ in the region between the subarctic and subtropical gyres (station K3). POC fluxes and e-ratios in the northwestern North Pacific were much higher than those in most other oceans. The annual POC flux corresponded to 69% of annual new production estimated from the seasonal difference of the nutrient in the Western Subarctic Gyre (45 g C m⁻² y⁻¹). These results indicate that much of the organic carbon assimilated in the surface layer of the northwestern North Pacific is transferred to the deep ocean in particulate form. Our conclusions support previous reports that diatoms play an important role in the biological pump.     

Effects of mesoscale phytoplankton variability on the copepods Neocalanus flemingeri and N. plumchrus in the coastal Gulf of Alaska

The copepods Neocalanus flemingeri and N. plumchrus are major components of the mesozooplankton on the shelf of the Gulf of Alaska, where they feed, grow and develop during April–June, the period encompassing the spring phytoplankton bloom. Satellite imagery indicates high mesoscale variability in phytoplankton concentration during this time. Because copepod ingestion is related to food concentration, we hypothesized that phytoplankton ingestion by N. flemingeri and N. plumchrus would vary in response to mesoscale variability of phytoplankton. We proposed that copepods on the inner shelf, where the phytoplankton bloom is most pronounced, would be larger and have more lipid stores than animals collected from the outer shelf, where phytoplankton concentrations are typically low. Shipboard feeding experiments with both copepods were done in spring of 2001 and 2003 using natural water as food medium. Chlorophyll concentration ranged widely, between 0.32 and 11.44 μg l⁻¹ and ingestion rates varied accordingly, between 6.0 and 627.0 ng chl cop⁻¹ d⁻¹. At chlorophyll concentrations<0.50 μg l⁻¹, ingestion is always low, <40 ng cop⁻¹ d⁻¹. Intermediate ingestion rates were observed at chlorophyll concentrations between 0.5 and 1.5 μg l⁻¹, and maximum rates at chlorophyll concentrations>1.5 μg l⁻¹. Application of these feeding rates to the phytoplankton distribution on the shelf allowed locations and time periods of low, intermediate and high daily feeding to be calculated for 2001 and 2003. A detailed cross-shelf survey of body size and lipid store in these copepods, however, indicated they were indistinguishable regardless of collection site. Although the daily ingestion of phytoplankton by N. flemingeri and N. plumchrus varied widely because of mesoscale variability in phytoplankton, these daily differences did not result in differences in final body size or lipid storage of these copepods. These copepods efficiently dealt with small and mesoscale variations in their food environment such that mesoscale structure in phytoplankton did not affect their final body size.     

Seasonal dynamics of primary and new production in the northern South China Sea: The significance of river discharge and nutrient advection

Biochemical and productivity measurements and nutrient enrichment experiments were conducted on three cruises in summer and two cruises in winter on the shelf and the basin of the northern South China Sea (SCS) between 2001 and 2004. Phytoplankton production, in terms of depth-integrated new production (INP) or depth-integrated primary production (IPP), was higher in winter than in summer and on the shelf than in the basin. In winter, with deepening of the mixed layer, nitrate from the shallow nitracline that characterized the SCS waters was made available in the surface and supported the highest production of the year. Averaged INP measured in winter (0.25 g C m⁻² d⁻¹) was about twice the summer average (0.12 g C m⁻² d⁻¹) and was 0.19 g C m⁻² d⁻¹ on the shelf compared with 0.15 g C m⁻² d⁻¹ in the basin. In winter, average INP on the shelf was higher than the basin (0.34 versus 0.21 g C m⁻² d⁻¹); whereas in summer, averaged INP on the shelf (0.13 g C m⁻² d⁻¹) and the basin (0.11 g C m⁻² d⁻¹) were similar. While averaged IPP measured in the basin was higher in winter than in summer (0.53 versus 0.35 g C m⁻² d⁻¹), IPP on the shelf showed little temporal variation (0.82 in winter versus 0.84 g C m⁻² d⁻¹ in summer). Considerable spatial and inter-annual variation in production was measured in the shelf waters during summer, which could be linked to discharge volume and plume flow direction of the Zhujiang River. While the shelf waters in summer were mostly nitrogen starved or nitrogen and phosphorus co-limited, excessive river runoff may cause the nutritive state to shift to phosphorus deficiency. Waters with low surface salinities and high fluorescence from riverine mixing could be found extending from the Zhujiang mouth to as far as offshore southern Taiwan after a typhoon passed the northern SCS and brought heavy rainfall. Overall, both nutrient advection in winter and river discharge from the China coast in summer made new nitrogen available and shaped the dynamics of phytoplankton production in these oligotrophic waters.     

Biogenic fluxes in the Cariaco Basin: a combined study of sinking particulates and underlying sediments

The fluxes of total mass, organic carbon (OC), biogenic opal, calcite (CaCO₃) and long-chain C₃₇ alkenones (ΣAlk₃₇) were measured at three water depths (275, 455 and 930 m) in the Cariaco Basin (Venezuela) over three separate annual upwelling cycles (1996–1999) as part of the CARIACO sediment trap time-series. The strength and timing of both the primary and secondary upwelling events in the Cariaco Basin varied significantly during the study period, directly affecting the rates of primary productivity (PP) and the vertical transport of biogenic materials. OC fluxes showed a weak positive correlation (r²=0.3) with PP rates throughout the 3 years of the study. The fluxes of opal, CaCO₃ and ΣAlk₃₇ were strongly correlated (0.6<r²<0.8) with those of OC. The major exception was the lower than expected ΣAlk₃₇ fluxes measured during periods of strong upwelling. All sediment trap fluxes were significantly attenuated with depth, consistent with marked losses during vertical transport. Annually, strong upwelling conditions, such as those observed during 1996–1997, led to elevated opal fluxes (e.g., 35 g m⁻² yr⁻¹ at 275 m) and diminished ΣAlk₃₇ fluxes (e.g., 5 mg m⁻² yr⁻¹ at 275 m). The opposite trends were evident during the year of weakest upwelling (1998–1999), indicating that diatom and haptophyte productivity in the Cariaco Basin are inversely correlated depending on upwelling conditions.The analyses of the Cariaco Basin sediments collected via a gravity core showed that the rates of OC and opal burial (10–12 g m⁻² yr⁻¹) over the past 5500 years were generally similar to the average annual water column fluxes measured in the deeper traps (10–14 g m⁻² yr⁻¹) over the 1996–1999 study period. CaCO₃ burial fluxes (30–40 g m⁻² yr⁻¹), on the other hand, were considerably higher than the fluxes measured in the deep traps (∼10 g m⁻² yr⁻¹) but comparable to those obtained from the shallowest trap (i.e. 38 g m⁻² yr⁻¹ at 275 m). In contrast, the burial rates of ΣAlk₃₇ (0.4–1 mg m⁻² yr⁻¹) in Cariaco sediments were significantly lower than the water column fluxes measured at all depths (4–6 mg m⁻² yr⁻¹), indicating the large attenuation in the flux of these compounds at the sediment–water interface. The major trend throughout the core was the general decrease in all biogenic fluxes with depth, most likely due to post-depositional in situ degradation. The major exception was the relatively low opal fluxes (∼5 g m⁻² yr⁻¹) and elevated ΣAlk₃₇ fluxes (∼2 mg m⁻² yr⁻¹) measured in the sedimentary interval corresponding to 1600–2000 yr BP. Such compositions are consistent with a period of low diatom and high haptophyte productivity, which based on the trends observed from the sediment traps, is indicative of low upwelling conditions relative to the modern day.     

Dissolved organic carbon export and subsequent remineralization in the mesopelagic and bathypelagic realms of the North Atlantic basin

Dissolved organic carbon (DOC) data are presented from three meridional transects conducted in the North Atlantic as part of the US Climate Variability (CLIVAR) Repeat Hydrography program in 2003. The hydrographic sections covered a latitudinal range of 6°S to 63°N along longitudes 20°W (CLIVAR line A16), 52°W (A20) and 66°W (A22). Over 3700 individual measurements reveal unprecedented detail in the DOC distribution and systematic variations in the mesopelagic and bathypelagic zones of the North Atlantic basin. Latitudinal gradients in DOC concentrations combined with published estimates of ventilation rates for the main thermocline and North Atlantic Deep Water (NADW) indicate a net DOC export rate of 0.081 Pg C yr⁻¹ from the epipelagic zone into the mesopelagic and bathypelagic zones. Model II regression and multiple linear regression models applied to pairwise measures of DOC and chlorofluorocarbon (CFC-12) ventilation age, retrieved from major water masses within the main thermocline and NADW, indicate decay rates for exported DOC ranging from 0.13 to 0.94 μmol kg⁻¹ yr⁻¹, with higher DOC concentrations driving higher rates. The contribution of DOC oxidation to oxygen consumption ranged from 5 to 29% while mineralization of sinking biogenic particles drove the balance of the apparent oxygen utilization.     

Commercially-cultured oysters (Crassostrea gigas) exert top-down control on intertidal pelagic resources in Willapa Bay,Washington, USA

The capacity of filter feeders to reduce seston and phytoplankton concentrations in the water column has important implications for restoration and management of coastal ecosystems. We directly measured changes in chlorophyll a concentration on commercially stocked intertidal oyster beds (Crassostrea gigas) in Willapa Bay, Washington, USA by recording water properties near small drifters as they tracked parcels of water across tide flats. Chlorophyll declined 9.6% per half hour in water passing on-bottom adult oysters and 41% for longline adult oysters, whereas chlorophyll concentrations increased as water flowed across tide flats without adult oysters. Field filtration rates, which were fit to exponential declines in chlorophyll and accounted for oyster density and water depth, averaged 0.35 L g^− 1 h^− 1 (shucked dry weight) for on-bottom aquaculture and 0.73 L g^− 1 h^− 1 for longline culture, compared to values of 2.5–12 L g^− 1 h^− 1 reported from laboratory studies of C. gigas. Field filtration rates may be lower than laboratory rates due to unfavorable field conditions (e.g., low initial chlorophyll concentrations) or masked by resuspension of benthic microalgae. In addition to distinctions among on-bottom, longline, and no-oyster habitats, Akaike's Information Criterion analysis showed temperature, initial chlorophyll concentration, and depth related to chlorophyll decline. This research corroborates mathematical models suggesting that benthic suspension feeders are exerting top-down control of pelagic production in this estuary, with strong patterns in chlorophyll emerging across extensive tideflats populated by C. gigas despite low field filtration rates.     

Persian Gulf response to a wintertime shamal wind event

The results from a～1 km resolution HYbrid Coordinate Ocean Model (HYCOM), forced by 1/2° Navy Operational Global Atmospheric Prediction System (NOGAPS) atmospheric data, were used in order to study the dynamic response of the Persian Gulf to wintertime shamal forcing. Shamal winds are strong northwesterly winds that occur in the Persian Gulf area behind southeast moving cold fronts. The period from 20 November to 5 December 2004 included a well defined shamal event that lasted 4–5 days. In addition to strong winds (16 m s^?1) the winter shamal also brought cold dry air (T_a=20 °C, q_a=10 g kg^?1) which led to a net heat loss in excess of 1000 W m^?2 by increasing the latent heat flux. This resulted in SST cooling of up to 10 °C most notably in the northern and shallower shelf regions. A sensitivity experiment with a constant specific humidity of q_a=15 g kg^?1 confirmed that about 38% of net heat loss was due to the air–sea humidity differences. The time integral of SST cooling closely followed the air–sea heat loss, indicating an approximate one-dimensional vertical heat balance. It was found that the shamal induced convective vertical mixing provided a direct mechanism for the erosion of stratification and deepening of the mixed layer by 30 m. The strong wind not only strengthened the circulation in the entire Persian Gulf but also established a northwestward flowing Iranian Coastal Current (ICC, 25–30 cm s^?1) from the Strait of Hormuz to about 52°E, where it veered offshore. The strongest negative sea level of 25–40 cm was generated in the northernmost portion of the Gulf while the wind setup against the coast of the United Arab Emirates established a positive sea level of 15–30 cm. The transport through the Strait of Hormuz at 56.2°E indicated an enhanced outflow of 0.25 Sv (Sv≡10⁶ m³ s^?1) during 24 November followed by an equivalent inflow on the next day.     

Bioenergetic model estimates of interannual and spatial patterns in consumption demand and growth potential of juvenile pink salmon (Oncorhynchus gorbuscha) in the Gulf of Alaska

A bioenergetic model of juvenile pink salmon (Oncorhynchus gorbuscha) was used to estimate daily prey consumption and growth potential of four ocean habitats in the Gulf of Alaska during 2001 and 2002. Growth potential was not significantly higher in 2002 than in 2001 at an alpha level of 0.05 (P=0.073). Average differences in growth potential across habitats were minimal (slope habitat=0.844 g d⁻¹, shelf habitat=0.806 g d⁻¹, offshore habitat=0.820 g d⁻¹, and nearshore habitat=0.703 g d⁻¹) and not significantly different (P=0.630). Consumption demand differed significantly between hatchery and wild stocks (P=0.035) when examined within year due to the interaction between hatchery verses wild origin and year. However, the overall effect of origin across years was not significant (P=0.705) due to similar total amounts of prey consumed by all juvenile pink salmon in both study years. We anticipated that years in which ocean survival was high would have had high growth potential, but this relationship did not prove to be true. Therefore, modeled growth potential may not be useful as a tool for forecasting survival of Prince William Sound hatchery pink salmon stocks. Significant differences in consumption demand and a two-fold difference in nearshore abundance during 2001 of hatchery and wild pink salmon confirmed the existence of strong and variable interannual competition and the importance of the nearshore region as being a potential competitive bottleneck.     

Diel variations of the bathymetric distribution of zooplankton groups and biomass in Cap-Ferret Canyon,France

The bathymetric distribution, abundance and diel vertical migrations (DVM) of zooplankton were investigated along the axis of the Cap-Ferret Canyon (Bay of Biscay, French Atlantic coast) by a consecutive series of synchronous net hauls that sampled the whole water column (0–2000 m in depth) during a diel cycle. The distribution of appendicularians (maximum 189 individuals m⁻³), cladocerans (maximum 287 individuals m⁻³), copepods (copepods<4 mm, maximum 773 individuals m⁻³, copepods>4 mm, maximum 13 individuals m⁻³), ostracods (maximum 8 individuals m⁻³), siphonophores (maximum >2 individuals m⁻³) and peracarids (maximum >600 individuals 1000 m⁻³) were analysed and represented by isoline diagrams. The biomass of total zooplankton (maximum 18419 μg C m⁻³, 3780 μg N m⁻³) and large copepods (>4 mm maximum 2256 μg C m⁻³, 425 μg N m⁻³) also were determined. Vertical migration was absent or affected only the epipelagic zone for appendicularians, cladocerans, small copepods and siphonophores. Average amplitude of vertical migration was about 400–500 m for ostracods, some hyperiids and mysids, and large copepods, which were often present in the epipelagic, mesopelagic, and bathypelagic zones. Large copepods can constitute more than 80% of the biomass corresponding to total zooplankton. They may play an important role in the active vertical transfer of carbon and nitrogen.     

Phytoplankton chemotaxonomy in the Atlantic sector of the Southern Ocean during late summer 2009

A chemotaxonomic investigation of surface phytoplankton was undertaken on a research cruise to the Atlantic sector of the Southern Ocean during late austral summer 2009. Based on pigment signatures, several distinct regions emerged that were delineated by physical features. CHEMTAX analysis of high performance liquid chromatography (HPLC) pigment data indicated that diatoms generally dominated communities south of the Antarctic Polar Front (APF), particularly in regions of elevated biomass where chlorophyll-a (chl-a) was >1.5 µg l⁻¹ and diatoms comprised >80% of biomass. Pigment signatures representative of haptophytes-8, indicative of Phaeocystis antarctica, were dominant near the ice shelf. Chl-a concentrations were 0.2–0.6 µg l⁻¹ between the APF and the Subtropical Front (STF) and outputs suggested that chlorophytes, haptophytes-8 and haptophyte-6, in the form of coccolithophores, were the major constituents. Very low chl-a levels (<0.2 µg l⁻¹) were observed north of the STF and the prokaryotes Synechococcus spp. and Prochlorococcus spp. were the dominant groups in these oligotrophic waters.     

The role of combined laser scanning and video techniques in monitoring wave-by-wave swash zone processes

Simulating swash zone morphodynamics remains one of the major weaknesses of beach evolution models. One of the reasons is the limited availability of data on morphological changes at the temporal scales of individual swash events. This paper sets out to present a new hybrid system, consisting of 2D/3D laser scanners and several video cameras, which was designed to monitor swash zone topographic change on a wave-by-wave basis. A methodology is proposed consisting of sensor calibration and several data processing steps, allowing a fusion of different sensors. Such an approach can improve the performance of several field/laboratory, optical technique applications for nearshore hydro- and morpho-dynamic measurements. Digital Elevation Models from a 3D scanner were used in the extrinsic camera calibration procedure and reduced the geo-rectification errors from 0.035 m < RMSE < 0.071 m to 0.008 m < RMSE < 0.013 m. The 2D scanner provided instantaneous measurements of the water and dry beach surface elevation along a 10 m cross-shore section, and comparison with ultrasonic sensor measurements resulted in RMS errors within the 1.7 cm < RMSE < 3.2 cm range. The combination of 2D scanner and video data (i) reduced geo-rectification errors by more than one order of magnitude; and (ii) made 2D laser point cloud processing easier and more robust. The hybrid monitoring system recorded the morphological change of a replenished beach-face on a wave-by-wave basis, during large-scale, physical modeling experiments and the observations showed that individual swash events could result in elevation changes up to dz = ± 10 cm. The sediment transport direction and intensity of the monitored swash events was relatively balanced and sediment transport rates ranged between − 3.5 kg m^− 1 s^− 1 > Q_t > 3.5 kg m^− 1 s^− 1. Extreme transport swash events became rarer as the morphology was reaching equilibrium.     

Physical drivers of phytoplankton production in the southern Benguela upwelling system

Investigations of primary production (PP) were undertaken in the southern Benguela ecosystem during two research surveys in October 2006 and May 2007. Significant differences in environmental conditions, as well as biomass and PP, were observed between October and May. During October, integrated biomass and PP were significantly higher, ranging from 20.43 to 355.01 mg m⁻², and 0.71 to 6.98 g C m⁻² d⁻¹, respectively, than in May, where the range was 47.92–141.79 mg m⁻², and 0.70–3.35 g C m⁻² d⁻¹, respectively. Distribution patterns indicated low biomass and PP in newly upwelled water along the coast, higher biomass and PP in the mid-shelf region, while lower values were observed at and beyond the shelf edge. Latitudinal variations showed consistently higher biomass and PP in the St. Helena Bay region compared to biomass and PP south of Cape Town. During both surveys, phytoplankton communities were comprised primarily of diatoms and small flagellates, with no significant differences. Phytoplankton adaptation to environmental variability was characterised by increased P_m^B and E_k under elevated temperatures and irradiance, while no clear relationships were evident for α^B. Generalised Additive Models (GAMs) showed that photosynthetic parameters were all significant predictors of photosynthesis rates (P_z), with P_m^B being the most important, accounting for 36.97% of the deviance in P_z. However, biomass levels and environmental conditions exerted a much greater influence on P_z, with irradiance explaining the largest proportion (68.24%) of the deviance. Multiple predictor GAMs revealed that 96.26% of the deviance in P_z could be explained by a model which included nitrate, chlorophyll a, and irradiance.     

Seasonal and interannual variability in particle fluxes of carbon,nitrogen and silicon from time series of sediment traps at Ocean Station P, 1982–1993: relationship to changes in subarctic primary productivity

An extended time series of particle fluxes at 3800 m was recorded using automated sediment traps moored at Ocean Station Papa (OSP, 50°N, 145°W) in the northeast Pacific Ocean for more than a decade (1982–1993). Time-series observations at 200 and 1000 m, and short-term measurements using surface-tethered free-drifting sediment traps also were made intermittently. We present data for fluxes of total mass (dry weight), particulate organic carbon (POC), particulate organic nitrogen (PON), biogenic Si (BSi), and particulate inorganic carbon (PIC) in calcium carbonate. Mean monthly fluxes at 3800 m showed distinct seasonality with an annual minimum during winter months (December–March), and maximum during summer and fall (April–November). Fluxes of total mass, POC, PIC and BSi showed 4-, 10-, 7- and 5-fold increases between extreme months, respectively. Mean monthly fluxes of PIC often showed two plateaus, one in May–August dominated by <63 μm particles and one in October–November, which was mainly >63 μm particles. Dominant components of the mass flux throughout the year were CaCO₃ and opal in equal amounts. The mean annual fluxes at 3800 m were 32±9 g dry weight g m⁻² yr⁻¹, 1.1±0.5 g POC m⁻² yr⁻¹, 0.15±0.07 g PON m⁻² yr⁻¹, 5.9±2.0 g BSi m⁻² yr⁻¹ and 1.7±0.6 g PIC m⁻² yr⁻¹. These biogenic fluxes clearly decreased with depth, and increased during “warm” years (1983 and 1987) of the El Niño, Southern Oscillation cycle (ENSO). Enhancement of annual mass flux rates to 3800 m was 49% in 1983 and 36% in 1987 above the decadal average, and was especially rich in biogenic Si. Biological events allowed estimates of sinking rates of detritus that range from 175 to 300 m d⁻¹, and demonstrate that, during periods of high productivity, particles sink quickly to deep ocean with less loss of organic components. Average POC flux into the deep ocean approximated the “canonical” 1% of the surface primary production.     

High primary productivity and f-ratio in summer in the Ulleung basin of the East/Japan Sea

To better understand the cause of high summer primary productivity in the Ulleung Basin located in the southwest part of the East/Japan Sea, the spatial dynamics of primary, new, and regenerated productivities (PP, NP, and RP) were examined along the path of the Tsushima Warm Current system in summer 2008. We compared hydrographic and chemical parameters in the Ulleung Basin with those of the Kuroshio Current in the Western Pacific Ocean and the East China Sea. In summer, integrated primary productivity (IPP, 0.37–0.96 g C m⁻² d⁻¹) and integrated new productivity (INP, 26–221 mg N m⁻² d⁻¹) within the euphotic zone in the Ulleung Basin were higher than those in the East China Sea and the Western Pacific Ocean (0.17–0.28 g C m⁻² d⁻¹, 2−5 mg N m⁻² d⁻¹, respectively). In contrast, there was no pronounced spatial variation in integrated regenerated productivity (IRP, 43–824 mg N m⁻² d⁻¹). Strong positive correlations between IPP and INP (also the f-ratio), and between nitrate uptake rate in the mixed layer and nitrate upward flux through the top of pycnocline in summer in the Ulleung Basin imply that the high IPP was mainly supported by supply of nitrate from the underlying water in the euphotic zone. Shallowing of the pycnocline depth as the current enters the East/Japan Sea facilitates nitrate supply from the nutrient-replete cold water immediately below the pycnocline through nitrate upward flux. A subsurface maximum in PP at or above the pycnocline and a high f-ratio further support the importance of this source of nitrate for maintaining the high summer PP in the Ulleung Basin. In comparison, the high PP layer was observed at the surface in the following fall and spring in the Ulleung Basin. Our results demonstrate the importance of hydrographic features in enhancing PP in this oligotrophic Tsushima Warm Current system.