Introductory perspective on the COREF Project

Abstract Coral reefs are tropic to subtropic, coastal ecosystems comprising very diverse organisms. Late Quaternary reef deposits are fossil archives of environmental, tectonic and eustatic variations that can be used to reconstruct the paleoclimatic and paleoceanographic history of the tropic surface oceans. Reefs located at the latitudinal limits of coral‐reef ecosystems (i.e. those at coral‐reef fronts) are particularly sensitive to environmental changes – especially those associated with glacial–interglacial changes in climate and sealevel. We propose a land and ocean scientific drilling campaign in the Ryukyu Islands (the Ryukyus) in the northwestern Pacific Ocean to investigate the dynamic response of the corals and coral‐reef ecosystems in this region to Late Quaternary climate and sealevel change. Such a drilling campaign, which we call the COREF (coral‐reef front) Project, will allow the following three major questions to be evaluated: (i) What are the nature, magnitude and driving mechanisms of coral‐reef front migration in the Ryukyus? (ii) What is the ecosystem response of coral reefs in the Ryukyus to Quaternary climate changes? (iii) What is the role of coral reefs in the global carbon cycle? Subsidiary objectives include (i) the timing of coral‐reef initiation in the Ryukyus and its causes; (ii) the position of the Kuroshio current during glacial periods and its effects on coral‐reef formation; and (iii) early carbonate diagenetic responses as a function of compounded variations in climate, eustacy and depositional mineralogies (subtropic aragonitic to warm‐temperate calcitic). The geographic, climatic and oceanographic settings of the Ryukyu Islands provide an ideal natural laboratory to address each of these research questions.     

Modern microbialites and their environmental significance, Meiji reef atoll, Nansha (Spratly) Islands, South China Sea

Meiji (Mischief) coral atoll, in Nansha (Spratly) Islands, South China Sea, consists of an annular reef rim surrounding a central lagoon. On the atoll rim there are either protuberant 'motu' (small coral patch reefs on the rim of atoll) islets or lower sandy cays that contain modern microbialite deposits on the corals in pinnacles and surrounding bottoms of the atoll. Microbialites, including villiform, hairy, and thin spine growth forms, as well as gelatinous masses, mats and encrustation, developed on coral colonies and atoll rim sediments between 0 and 15 m deep-water settings. The microbialites were produced by natural populations of filamentous cyanobacteria and grew on (1) bulbous corals together with Acropora sp., (2) on massive colonies of Galaxea fascicularis, (3) on dead Montipora digitata, and (4) on dead Acropora teres, some hairy microbialite growing around broken coral branches. This study demonstrates that microbial carbonates are developed in coral reefs of South China Sea and indicates that microbial processes may be important in the construction of modern reef systems. The results have significance in the determination of nature and composition in microorganisms implied in the formation ancient microbialites, and permit evaluation of the importance of microbial deposits in mo-dern coral reefs and of 'microbialites' in biogeochemical cycles of modern coral reef systems. The re-sults also provide evidence of modern analogues for ancient microbialites in shallow-water settings, and combine with sedimentological studies of ancient microbialites to understand their controls.     

A relic coral fauna threatened by global changes and human activities, Eastern Brazil

Coral species composition of drilled cores from emergent bank reefs, and coral cover of the surface of old and living reefs located along the coast of the state of Bahia, Eastern Brazil, revealed that there is a marked change in the occurrence of the major building coral species in different time intervals of the reef structure, as well as in the living surface of reefs located in two different geographical sites. Holocene core sections from two reef areas (12 degrees 40'S-38 degrees 00'W and 18 degrees 00'S-39 degrees 00'W) have as major reef builders, on its topmost core interval (3 to 4 ky old), the endemic coral Mussismilia braziliensis Verrill, 1868, which also dominate on the 2.5-3.5 ky old surfaces of truncated reef tops. At the base of the cores (the 2m lower interval, older than 4 ky BP), another endemic coral Mussismilia harttii Verrill, 1868 is the dominant reef component. The relative abundance of M. braziliensis on the living surfaces of shallow reefs from both areas, shows that in the southern area, it is up to 98% on reefs located 60 km off the coast, in depths between 3 and 4m, but do not exceed 1.3% on the surface of the northern reefs located 1-2 km off the coast in depths 4-5m. The Holocene falling sea level that occurred along the coast of Brazil since 5.1 ky BP, causes an increasing runoff into the area of coastal reefs. This phenomenon may have affected the nearshore reef building fauna, replacing a more susceptive coral fauna with one better adapted to low light levels and higher sediment influx. The high turbidity associated with early Holocene shelf flooding, should also be responsible for the absence of M. braziliensis during the initial stages of reef buildup in Brazil. At the present time, the rapidly increasing human pressure, due to changes in land uses of the coastal zone (increasing sedimentation rate, nutrification of coastal waters, industrial pollution) and underwater practices, such as overfishing and an intense tourism, is aggravating the recovery capacity of this already naturally threatened coral community. If this situation coupled with increasing sea surface temperature persists, modern coral reef growth, in Brazil cannot be maintained and the major reef building coral species of the reefs in Bahia, a remnant endemic coral fauna will very soon appear in the list of endangered species.     

Assessing coral reef health across onshore to offshore stress gradients in the US Virgin Islands

Managing the effects of anthropogenic disturbance on coral reefs is highly dependant on effective strategies to assess degradation and recovery. We used five years of field data in the US Virgin Islands to investigate coral reef response to a potential gradient of stress. We found that the prevalence of old partial mortality, bleaching, and all forms of coral health impairment (a novel category) increased with nearshore anthropogenic processes, such as a five-fold higher rate of clay and silt sedimentation. Other patterns of coral health, such as recent partial mortality, other diseases, and benthic cover, did not respond to this potential gradient of stress or their response could not be resolved at the frequency or scale of monitoring. We suggest that persistent signs of disturbance are more useful to short-term, non-intensive (annual) coral reef assessments, but more intensive (semi-annual) assessments are necessary to resolve patterns of transient signs of coral health impairment.     

Remote sensing of coral reefs and their physical environment

There has been a vast improvement in access to remotely sensed data in just a few recent years. This revolution of information is the result of heavy investment in new technology by governments and industry, rapid developments in computing power and storage, and easy dissemination of data over the internet. Today, remotely sensed data are available to virtually anyone with a desktop computer. Here, we review the status of one of the most popular areas of marine remote sensing research: coral reefs. Previous reviews have focused on the ability of remote sensing to map the structure and habitat composition of coral reefs, but have neglected to consider the physical environment in which reefs occur. We provide a holistic review of what can, might, and cannot be mapped using remote sensing at this time. We cover aspects of reef structure and health but also discuss the diversity of physical environmental data such as temperature, winds, solar radiation and water quality. There have been numerous recent advances in the remote sensing of reefs and we hope that this paper enhances awareness of the diverse data sources available, and helps practitioners identify realistic objectives for remote sensing in coral reef areas.     

Diseases leading to accelerated decline of reef corals in the largest South Atlantic reef complex (Abrolhos Bank, eastern Brazil)

Although reef corals worldwide have sustained epizootics in recent years, no coral diseases have been observed in the southwestern Atlantic Ocean until now. Here we present an overview of the main types of diseases and their incidence in the largest and richest coral reefs in the South Atlantic (Abrolhos Bank, eastern Brazil). Qualitative observations since the 1980s and regular monitoring since 2001 indicate that coral diseases intensified only recently (2005–2007). Based on estimates of disease prevalence and progression rate, as well as on the growth rate of a major reef-building coral species (the Brazilian-endemic Mussismilia braziliensis), we predict that eastern Brazilian reefs will suffer a massive coral cover decline in the next 50 years, and that M. braziliensis will be nearly extinct in less than a century if the current rate of mortality due to disease is not reversed.     

Impact of sea-level rise and coral mortality on the wave dynamics and wave forces on barrier reefs

A one-dimensional wave model was used to investigate the reef top wave dynamics across a large suite of idealized reef-lagoon profiles, representing barrier coral reef systems under different sea-level rise (SLR) scenarios. The modeling shows that the impacts of SLR vary spatially and are strongly influenced by the bathymetry of the reef and coral type. A complex response occurs for the wave orbital velocity and forces on corals, such that the changes in the wave dynamics vary reef by reef. Different wave loading regimes on massive and branching corals also leads to contrasting impacts from SLR. For many reef bathymetries, wave orbital velocities increase with SLR and cyclonic wave forces are reduced for certain coral species. These changes may be beneficial to coral health and colony resilience and imply that predicting SLR impacts on coral reefs requires careful consideration of the reef bathymetry and the mix of coral species.     

Macroalgae in the coral reefs of Eilat (Gulf of Aqaba, Red Sea) as a possible indicator of reef degradation

The current state of health of the coral reefs in the northern Gulf of Aqaba (Red Sea), notably the Eilat reefs, is under debate regarding both their exact condition and the causes of degradation. A dearth of earlier data and unequivocal reliable indices are the major problems hinder a clear understanding of the reef state. Our research objective was to examine coral-algal dynamics as a potential cause and an indication of reef degradation. The community structure of stony corals and algae along the northern Gulf of Aqaba reveal non-seasonal turf algae dominancy in the shallow Eilat reefs (up to 72%), while the proximate Aqaba reefs present negligible turf cover (<6%). We believe that turf dominancy can indicate degradation in these reefs, based on the reduction in essential reef components followed by proliferation of perennial turf algae. Our findings provide further evidence for the severe state of the Eilat coral reefs.     

Management of coral reefs: we have gone wrong when neglecting active reef restoration

The current best management tools employed in coral reefs worldwide do not achieve conservation objectives as coral reefs continue to degrade. Even improved reef management helps, at best, to reduce the degradation pace, whereas the worsening global changes foretell a dismal fate for coral reefs. The assertion made here is that the prospect for reefs' future is centered on omnipresent acceptance of restoration, an 'active' management instrument. A recent promising such tool is the 'gardening concept', influenced by the well-established scientific discipline of terrestrial forestation. This notion is supported by a two-step protocol. The first step entails rearing coral "seedlings", in specially designed underwater nurseries, to transplantable size, before applying the second step, out-planting into damaged areas of the nursery-farmed coral colonies. Only the establishment of large-scale nurseries and transplantation actions, together with conventional management tools, will be able to cope with extensive reef degradation on the global scale.     

Honduras: Caribbean Coast

The coast of Honduras, Central America, represents the southern end of the Mesoamerican Barrier Reef System, although its marine resources are less extensive and studied than nearby Belize and Mexico. However, the coastal zone contains mainland reef formations, mangroves, wetlands, seagrass beds and extensive fringing reefs around its offshore islands, and has a key role in the economy of the country. Like most tropical areas, this complex of benthic habitats experiences limited annual variation in climatic and oceanographic conditions but seasonal and occasional conditions, particularly coral bleaching and hurricanes, are important influences. The effects of stochastic factors on the country's coral reefs were clearly demonstrated during 1998 when Honduras experienced a major hurricane and bleaching event. Any natural or anthropogenic impacts on reef health will inevitably affect other countries in Latin America, and vice versa, since the marine resources are linked via currents and the functioning of the system transcends political boundaries. Much further work on, for example, movement of larvae and transfer of pollutants is required to delineate the full extent of these links.

Anthropogenic impacts, largely driven by the increasing population and proportion of people living in coastal areas, are numerous and include key factors such as agricultural run-off, over-fishing, urban and industrial pollution (particularly sewage) and infrastructure development. Many of these threats act synergistically and, for example, poor watershed management via shifting cultivation, increases sedimentation and pesticide run-off onto coral reefs, which increases stress to corals already affected by decreasing water quality and coral bleaching. Threats from agriculture and fishing are particularly significant because of the size of both industries. The desire to generate urgently required revenue within Honduras has also led to increased tourism which provides an over-arching stress to marine resources since most tourists spend time in the coastal zone. Hence the last decade has seen a dramatic increase in coastal development, a greater requirement for sewage treatment and more demand for freshwater, particularly in the Bay Islands.

Although coastal zone management is relatively recent in Honduras, it is gaining momentum from both large-scale initiatives, such as the Ministry of Tourism's ‘Bay Islands Environmental Management Project', and national and international NGO projects. For example, a series of marine protected areas and legislative regulations have been established, but management capacity, enforcement and monitoring are limited by funding, expertise and training. Existing and future initiatives, supported by increased political will and environmental awareness of stakeholders, are vital for the long-term economic development of the country.     

西沙群岛西科1井晚中新世-上新世生物礁沉积的磁性地层学初步结果

本文对西沙群岛西科1井钻孔岩心晚中新世-上新世生物礁沉积进行了详细的岩石磁学、磁性扫描与磁性地层学研究.结果显示,西科1井生物礁相沉积中的载磁矿物主要是磁铁矿.我们推测,这些磁铁矿的微小颗粒主要来自海水中含有的陆源物质,在生物生长过程中通过珊瑚体或其它寄生生物对海水的过滤与吸附作用保存在生物礁沉积中.进一步的磁性地层学研究及其与地磁极性年表的对比发现,在上新统莺歌海组、上中新统黄流组内部可获得多个年龄控制点,并对莺歌海组和黄流组的底界位置给出了初步制约.其中,莺歌海组记录了C2An.3n和C3n.4n,黄流组记录了C3An.2n至C5n.2n.虽然这一对比方案存在一定不确定性,但是在现阶段生物地层年代及其它年代学资料相对匮乏的情况下,我们认为本项研究的磁性地层学结果能为西沙群岛晚中新世以来的生物礁沉积提供更多可靠的年龄控制点,并为今后的区域地层对比提供磁性地层年代学依据.     

Field observations of wave refraction and propagation pathways on coral reef platforms

Field experiments were conducted to investigate the refraction and propagation of ocean waves across two coral reef platforms in the Maldives, central Indian Ocean. A total of seven pressure sensors were deployed on each reef to quantify temporal and spatial variations in wave characteristics across the platform surfaces. Directional wave properties were calculated from high frequency (2 Hz) wave and current records obtained at two locations on each reef and corroborate theoretically predicted propagation pathways derived from an analytical wave refraction model. Results demonstrate that reef geometry critically controls the refraction and propagation behaviour of incident swell across the reef structures. Differences in the magnitude of refraction (approximately 57° and 14°) observed on each reef can be attributed to variations in platform shape and orientation to incident waves. Results demonstrate that reef flat wave patterns define the segmentation of platform surfaces into distinctive high and low wave energy zones. Furthermore, wave focussing has been identified as a major mechanism controlling the transformation of wave energy across the reefs. Results provide the first field‐based validation of wave refraction and convergence on coral reefs and have significant implications for sedimentation processes and the formation of platform deposits. Reef configurations which promote marked wave convergence are more likely to retain sediment on the reef surface, whereas platforms that induce less refraction and changes in the direction of incident waves have a higher potential for the off‐reef evacuation of sediment over leeward reef margins. Results of wave measurements substantiate such projections and provide a first order explanation for the existence and absence of a coral cay on the two study reefs. The study presents empirical evidence of wave refraction and convergence on coral reefs and establishes a baseline for future investigations of hydrodynamic process controls on platform sedimentation and island formation. Copyright © 2012 John Wiley & Sons, Ltd.     

Is proximity to land-based sources of coral stressors an appropriate measure of risk to coral reefs? An example from the Florida Reef Tract

Localized declines in coral condition are commonly linked to land-based sources of stressors that influence gradients of water quality, and the distance to sources of stressors is commonly used as a proxy for predicting the vulnerability and future status of reef resources. In this study, we evaluated explicitly whether proximity to shore and connections to coastal bays, two measures of potential land-based sources of disturbance, influence coral community and population structure, and the abundance, distribution, and condition of corals within patch reefs of the Florida Reef Tract. In the Florida Keys, long-term monitoring has documented significant differences in water quality along a cross-shelf gradient. Inshore habitats exhibit higher levels of nutrients (DIN and TP), TOC, turbidity, and light attenuation, and these levels decrease with increasing distance from shore and connections to tidal bays. In clear contrast to these patterns of water quality, corals on inshore patch reefs exhibited significantly higher coral cover, higher growth rates, and lower partial mortality rates than those documented in similar offshore habitats. Coral recruitment rates did not differ between inshore and offshore habitats. Corals on patch reefs closest to shore had well-spread population structures numerically dominated by intermediate to large colonies, while offshore populations showed narrower size-distributions that become increasingly positively skewed. Differences in size-structure of coral populations were attributed to faster growth and lower rates of partial mortality at inshore habitats. While the underlying causes for the favorable condition of inshore coral communities are not yet known, we hypothesize that the ability of corals to shift their trophic mode under adverse environmental conditions may be partly responsible for the observed patterns, as shown in other reef systems. This study, based on data collected from a uniform reef habitat type and coral species with diverse life-history and stress-response patterns from a heavily exploited reef system, showed that proximity to potential sources of stressors may not always prove an adequate proxy for assigning potential risks to reef health, and that hypothesized patterns of coral cover, population size-structure, growth, and mortality are not always directly related to water quality gradients.     

Informing policy to protect coastal coral reefs: Insight from a global review of reducing agricultural pollution to coastal ecosystems

The continuing degradation of coral reefs has serious consequences for the provision of ecosystem goods and services to local and regional communities. While climate change is considered the most serious risk to coral reefs, agricultural pollution threatens approximately 25% of the total global reef area with further increases in sediment and nutrient fluxes projected over the next 50 years. Here, we aim to inform coral reef management using insights learned from management examples that were successful in reducing agricultural pollution to coastal ecosystems. We identify multiple examples reporting reduced fluxes of sediment and nutrients at end-of-river, and associated declines in nutrient concentrations and algal biomass in receiving coastal waters. Based on the insights obtained, we recommend that future protection of coral reef ecosystems demands policy focused on desired ecosystem outcomes, targeted regulatory approaches, up-scaling of watershed management, and long-term maintenance of scientifically robust monitoring programs linked with adaptive management.     

Paleoenvironmental interpretations of Quaternary reef deposits based on comparisons of 10 selected modern and fossil larger foraminifera from the Ryukyu Islands, Japan

Abstract A new method for reconstructing depositional environments of larger foraminifera‐bearing limestones is proposed. First, depth and spatial distributions of empty tests of 10 foraminiferal taxa in a 1–2 mm size fraction were examined using 32 surface sediment samples collected from depths shallower than 200 m, located to the west of Miyako Island, Ryukyu Islands, northwest Pacific. Distributional ranges of empty tests in the 1–2 mm size fraction appear to be more limited than those including other size fractions in previous reports, partly because larger empty tests of each taxon are less easily transported than smaller ones. Multivariate analyses (Q‐mode cluster analysis and non‐metric multidimensional scaling ordination) based on binary (presence/absence) data of the 10 taxa delineate four sample groups, each of which corresponds to different depositional environments: nearshore zone/bay inlet; back‐reef to fore‐reef; outer shelf to shelf slope; and shelf slope distant from coral reefs. Next, these modern data were applied to reconstruct the depositional environment of a rock section distributed in the Shiratorizaki area (Irabu Island, Ryukyu Islands), which consists of larger foraminiferal limestone of the Pleistocene Ryukyu Group. Multivariate analyses were performed on the fossil plus the modern foraminiferal data to explore the possible relationship of the fossil associations with variations in modern associations, demonstrating that the fossil foraminiferal associations resemble the modern outer shelf associations. The modern analog technique was also applied to estimate paleobathymetry using fossil foraminiferal data. The results indicate that the section studied was deposited in outer shelf environments at depths between 53.5 and 98.6 m. These paleoenvironmental interpretations are consistent with previous studies based on sedimentary facies and the computer‐based expert system. The modern dataset and methods used in our work would be particularly useful for paleoenvironmental reconstructions of Quaternary reef and shelf carbonates along active margins of the northwest Pacific.     

Potentialities,uncertainties and complexities in the response of coral reefs to future sea-level rise

Coral islands formed of largely unconsolidated sands only a few metres above sea level are thought to be particularly vulnerable to sea-level rise consequent upon global warming. However, scenarios which predict catastrophic flooding and loss of island area need reassessment, particularly in the light of the continued downwards revision of projected rates of future sea-level rise. Revised questions concern the interactions between reef growth and sea-level change, biophysical constraints on coral growth, and the importance to reef systems of potential changes in the magnitude, frequency and location of tropical cyclones and hurricanes. It is clear that most reefs have the growth potential to meet even the highest of future sea-level rise scenarios, but too little is known about physiological and physical constraints to reef growth to adequately evaluate the importance of these two factors in constraining this potential at the present time. Future sea-level rise in the tropical oceans, and coral reef responses, will take place against a backdrop of inter-regional differences in Holocene sea levels, resulting from the varying interaction of eustatic and hydro-isostatic processes. These differences have generated varying constraints on the development of modern reefs and varying inherited topographies upon which future sea-level changes will be superimposed. These controls are particularly important in assessing differences in vulnerability to future sea-level rise for reef islands in the Pacific Ocean and the Caribbean Sea.     

Long-term community changes on a high-latitude coral reef in the Greater St Lucia Wetland Park, South Africa

South African coral reefs are limited in size but, being marginal, provide a model for the study of many of the stresses to which these valuable systems are being subjected globally. Soft coral cover, comprising relatively few species, exceeds that of scleractinians over much of the reefs. The coral communities nevertheless attain a high biodiversity at this latitude on the East African coast. A long-term monitoring programme was initiated in 1993, entailing temperature logging and image analysis of high resolution photographs of fixed quadrats on representative reef. Sea temperatures rose by 0.15 degrees C p.a. at the site up to 2000 but have subsequently been decreasing by 0.07 degrees C p.a. Insignificant bleaching was encountered in the region during the 1998 El Nino Southern Oscillation (ENSO) event, unlike elsewhere in East Africa, but quantifiable bleaching occurred during an extended period of warming in 2000. Peak temperatures on the South African reefs thus appear to have attained the coral bleaching threshold. While this has resulted in relatively little bleaching thus far, the increased temperatures appear to have had a deleterious effect on coral recruitment success as other anthropogenic influences on the reefs are minimal. Recruitment success diminished remarkably up to 2004 but appears again to be improving. Throughout, the corals have also manifested changes in community structure, involving an increase in hard coral cover and reduction in that of soft corals, resulting in a 5.5% drop in overall coral cover. These "silent" effects of temperature increase do not appear to have been reported elsewhere in the literature.     

Forecasting models to quantify three anthropogenic stresses on coral reefs from marine recreation: anchor damage, diver contact and copper emission from antifouling paint

This research focuses on damage to coral reefs from three anthropogenic stresses: the dropping of anchors and their chains, human contact, and emission of copper from antifouling paints. Forecasting models are described that quantify degradation in terms of percentage of coral cover damaged/year or increasing levels of water toxicity/year. The models utilize a Monte Carlo simulation that applies a range of values or a probability distribution to each of the numerous uncertain variables. This model has the flexibility to adapt, and become more accurate, when users input assumptions specific to their diving sites. Given our specific assumptions for a frequently visited site, anchors and their chains forecast a distribution of coral reef cover damage with a mean of 7.11%+/-4.77%, diver contact forecast a distribution of coral reef cover damage with a mean of 0.67%+/-0.38%, and antifouling paint forecast a distribution of copper level increase in the water with a mean of 0.037+/-0.014ppb. The results support recommendations for the implementation and sustained use of several specific marine recreation practices.