The influence of phytoplankton assemblage composition on biogeochemical characteristics and cycles in the southern Ross Sea,Antarctica

To test the hypothesis that phytoplankton assemblages dominated by different taxa have distinct biogeochemical characteristics and cycles, the temporal and spatial variations in phytoplankton biomass and composition were studied within the Ross Sea polynya, where diatoms and the haptophyte Phaeocystis antarctica are thought to have spatially distinct distributions. Two cruises were completed, with the first conducted in spring, 1994, and the second in late spring–early summer, 1995/1996. Ice concentrations decreased substantially from spring to summer. Mixed layer depths for the region decreased markedly in early spring and were relatively invariant thereafter; the strength of the stratification varied both in time and space. Mixed layers were greater in spring in assemblages dominated by diatoms (as determined by HPLC pigment concentrations) than those dominated by Phaeocystis antarctica, whereas in summer no difference was observed. Nutrient concentrations were initially high and near winter values, but decreased throughout November and December. Nitrate : phosphate removal ratios varied widely, with ratios exceeding 20 in spring but decreasing below 14 in summer. N : P removal ratios at stations dominated by diatoms were less than the Redfield ratio in both spring and summer, and at those stations dominated by P. antarctica the N : P removal ratio was ca. 19 in both seasons. Chlorophyll and particulate matter concentrations increased as nutrients decreased. Spatial and temporal variations of phytoplankton pigments occurred, with 19′-hexanoylfucoxanthin, a pigment of P. antarctica, exceeding 3.9 μg l⁻¹ during spring in the south-central polynya, and fucoxanthin, an accessory pigment of diatoms, found in concentrations >1 μg l⁻¹ in the western Ross Sea. The distributions were not mutually exclusive, and concentrations of both pigments were greatest in spring. The early growth of P. antarctica appears to be related to earlier stratification and disappearance of ice from the south-central Ross Sea. Ratios of FUCO/CHL were relatively invariant, but substantial changes in the HEX/CHL and POC/CHL ratios were observed through time. A one-dimensional nitrogen budget for the spring–early summer period suggests that much of the surface production was partitioned into particles, most (53%) of which remained in the upper 200 m. The rest was partitioned into dissolved organic matter (14%), remineralized as ammonium (19%), or sank from the surface layer as particles (13%). The region may serve as a useful analog to other polar systems, and an understanding of the processes controlling assemblage composition, production, and biomass accumulation may provide insights into biogeochemical cycles of other Antarctic environments.     

Light absorption by phytoplankton,non-algal particles and dissolved organic matter at the Patagonia shelf-break in spring and summer

Satellite image studies and recent in situ sampling have identified conspicuous phytoplankton blooms during spring and summer along the Patagonia shelf-break front. The magnitudes and spectral characteristics of light absorption by total particulate matter (phytoplankton and detritus) and colored dissolved organic matter (CDOM) have been determined by spectrophotometry in that region for spring 2006 and late summer 2007 seasons. In spring, phytoplankton absorption was the dominant optical component of light absorption (60–85%), and CDOM showed variable and important contributions in summer (10–90%). However, there was a lack of correlation between phytoplankton biomass (chlorophyll-a concentration or [chl a]) and the non-algal compartment in both periods. A statistically significant difference was found between the two periods with respect to the CDOM spectral shape parameter (S_cdom), with means of 0.015 (spring) and 0.012 nm^?1 (summer). Nonetheless, the mean S_cdm values, which describe the slope of detritus plus CDOM spectra, did not differ between the periods (average of 0.013 nm^?1). Phytoplankton absorption values in this work showed deviations from mean parameterizations in previous studies, with respect to [chl a], as well as between the two study periods. In spring, despite the microplankton dominance, high specific absorption values and large dispersion were found (a*_ph(440)=0.04±0.03 m² mg [chl a]^?1), which could be attributed to an important influence of photo-protector accessory pigments. In summer, deviations from general trends, with values of a*_ph(440) even higher (0.09±0.02 m² mg [chl a]^?1), were due to the dominance of small cell sizes and also to accessory pigments. These results highlight the difficulty in deriving robust relationships between chlorophyll concentration and phytoplankton absorption coefficients regardless of the season period. The validity of a size parameter (S_f) derived from the absorption spectra has been demonstrated and was shown to describe the size structure of phytoplankton populations, independently of pigment concentration, with mean values of 0.41 in spring and 0.72 in summer. Our results emphasize the need for specific parameterization for the study region and seasonal sampling approach in order to model the inherent optical properties from water reflectance signatures.     

Community structure and photosynthetic physiology of phytoplankton in the northwest subarctic Pacific during an in situ iron fertilization experiment (SEEDS-II)

Temporal changes in the abundance, community composition, and photosynthetic physiology of phytoplankton in surface waters were investigated during the second in situ iron (Fe) fertilization experiment in the NW subarctic Pacific (SEEDS-II). Surface chlorophyll a concentration was 0.75 mg m⁻³ on the day before the first Fe enrichment (i.e. Day 0), increased ca. 3-fold until Day 13 after two Fe additions, and thereafter declined with time. The photochemical quantum efficiency (F_v/F_m) and functional absorption cross-section (σPSII) of photosystem II for total phytoplankton in surface waters increased and decreased inside the Fe-enriched patch through Day 13, respectively. These results indicate that the photosynthetic physiological condition of the phytoplankton improved after the Fe infusions. However, the maximum F_v/F_m value of 0.43 and the maximum quantum yield of carbon fixation (φ_max) of 0.041 mol C (mol photon)⁻¹ during the development phase of the bloom were rather low, compared to their theoretical maximum of ca. 0.65 and 0.10 mol C (mol photon)⁻¹, respectively. Diatoms, which were mainly composed of oceanic species, did not bloom, and autotrophic nanoflagellates such as cryptophytes and prasinophytes became predominant in the phytoplankton community inside the Fe-enriched patch. In ferredoxin/flavodoxin assays for micro-sized (20–200 μm in cell length) diatoms, ferredoxin was not detected but flavodoxin expressions consistently occurred with similar levels both inside and outside the Fe-enriched patch, indicating that the large-sized diatoms were stressed by Fe bioavailability inside the Fe-enriched patch even after the Fe enrichments. Our data suggest that the absence of a Fe-induced large-sized diatom bloom could be partly due to their Fe stress throughout SEEDS-II.     

Depth zonation and bathymetric trends of deep-sea megafaunal scavengers of the Hawaiian Islands

The deep sea has been shown to exhibit strong depth zonation in species composition and abundance. Examination of these patterns can offer ecological insight into how organisms adapt and respond to changing environmental parameters that co-occur with depth. Here we provide the first tropical study on bathymetric zonation and other depth-related trends (size, abundance, and species richness) spanning shelf to abyssal depths of scavenging megafauna. Baited time-lapse free-vehicle cameras were used to examine the deep-sea benthic and demersal scavenging communities of the Hawaiian Islands, an area for which the biology and ecology have remained poorly studied below 2000 m. Twenty-two deployments ranging in depth from 250 to 4783 m yielded 37 taxa attracted to bait, including the first known occurrence of the family Zoarcidae in the Hawaiian Islands. Cluster analysis of Bray–Curtis similarity of species peak abundance (n_max) revealed four main faunal zones (250–500, 1000, 1500–3000, and ?4000 m) with significant separation (ANOSIM, global R=0.907, p=0.001) between designated depth groups. A major faunal break was identified at the 500–1000 m transition where species turnover was greatest, coinciding with the location of the local oxygen minimum zone. Dominance in species assemblage shifted from decapod crustaceans to teleosts moving from shallow to deeper faunal zones. Significant size differences in total length with depth were found for two of the four fish species examined. A logarithmic decline was observed in scavenger relative abundance with depth. Evidence of interaction between scavenging species was also noted between Synaphobranchus affinis and Neolithodes sp. (competition) and Histiobranchus sp. and aristeid shrimp (predation), suggesting that interactions between scavengers could influence indices of abundance generated from baited camera data.     

Fish settlement in the ocean vs. estuary: Comparison of pelagic larval and settled juvenile composition and abundance from southern New Jersey,U.S.A.

To describe the larval and juvenile fish fauna and to evaluate the relative contribution of the ocean and the estuary as settlement areas for benthic species, we compared the composition and abundance of larval fish supply to that of recently settled juvenile fishes in both ocean and an adjacent estuary habitats in southern New Jersey. The study was conducted from May to November 1992 in the Great Bay–Little Egg Harbor estuary (<1–8 m sampling depth) and on the adjacent inner continental shelf in the vicinity of Beach Haven Ridge (8–16 m). During the study more larvae nearing settlement (postflexion) were captured in the estuary than in the ocean. Settlement occurred earlier in the estuary than in the ocean perhaps under the influence of earlier, seasonal warming of estuarine waters. There appeared to be two spatial patterns of settlement in the study area based on the dominant species (n = 17) represented by a sufficient number of individuals (n ≥ 25 individuals). There were species that primarily settle in the estuary, as represented by both estuarine residents (n = 3) and transients (n = 4), and those that settle in both the estuary and the ocean (n = 10). However, there were no species whose larvae were present in the estuary yet settle in the ocean. The fact that many of the species settle in both the estuary and the ocean indicates an overlap between these habitats because, at least for some species, these habitats may function in the same way. Further resolution of fish settlement patterns, and its influence on recruitment will need to rely on synoptic comparisons between estuaries and the ocean over multiple years.     

Midwater fishes collected in the vicinity of the Sub-Polar Front,Mid-North Atlantic Ocean,during ECOMAR pelagic sampling

The ECOMAR project was a multidisciplinary process study conducted in the mid-North Atlantic, coincident hydrodynamically with the Sub-Polar Front (SPF; 48–54°N) and topographically with Charlie-Gibbs Fracture Zone of the Mid-Atlantic Ridge, as part of the Census of Marine Life field project MAR-ECO. Midwater trawling was conducted during the 2007 and 2009 ECOMAR expeditions at 14 stations north and south of the SPF, day and night, in four discrete depth intervals from 0 to 1000 m. A total of 56 species of midwater fishes representing 44 genera and 18 families were collected, several of which are new records for the region and/or were not previously sampled during MAR-ECO sampling. An annotated species list with depth-of-capture data is provided. Three species of the genus Cyclothone (Cyclothone braueri, Cyclothone microdon and Cyclothone pallida) and the myctophid Benthosema glaciale combined to contribute ~88% of all specimens collected. This finding differs from results of previous net-based sampling in the same area, likely due to sampling scheme differences (diel sampling, upper 800 m concentration) and gear selectivity (mesh size, trawl speed). Quantitative data from ECOMAR midwater sampling and the previous 2004 G.O. Sars MAR-ECO expedition are compared. Despite differences in gear between the major MAR-ECO expeditions, abundance estimates of some dominant species were remarkably similar. Data showed that the SPF is an asymmetrical, taxon-specific biogeographic boundary for deep-pelagic fishes in the North Atlantic; the SPF is semi-permeable to some species in one direction, while a strong boundary for species in another direction. Deeper-living fish species did not appear as affected by the SPF as a boundary.     

Diurnal changes of photosynthetic quantum yield in the intertidal macroalga Sargassum thunbergii under simulated tidal emersion conditions

In this study, a three-way factorial experimental design was used to investigate the diurnal changes of photosynthetic activity of the intertidal macroalga Sargassum thunbergii in response to temperature, tidal pattern and desiccation during a simulated diurnal light cycle. The maximum (F_v/F_m) and effective (Φ_PSII) quantum yields of photosystem II (PSII) were estimated by chlorophyll fluorescence using a pulse amplitude modulated fluorometer. Results showed that this species exhibited sun-adapted characteristics, as evidenced by the daily variation of F_v/F_m and Φ_PSII. Both yield values decreased with increasing irradiance towards noon and recovered rapidly in the afternoon suggesting a dynamic photoinhibition. The photosynthetic quantum yield of S. thunbergii thalli varied significantly with temperature, tidal pattern and desiccation. Thalli were more susceptible to light-induced damage at high temperature of 25 °C and showed complete recovery of photosynthetic activity only when exposed to 8 °C. In contrast with the mid-morning low tide period, although there was an initial increase in photosynthetic yield during emersion, thalli showed a greater degree of decline at the end of emersion and remained less able to recover when low tide occurred at mid-afternoon. Short-term air exposure of 2 h did not significantly influence the photosynthesis. However, when exposed to moderate conditions (4 h desiccation at 15 °C or 6 h desiccation at 8 °C), a significant inhibition of photosynthesis was followed by partial or complete recovery upon re-immersion in late afternoon. Only extreme conditions (4 h desiccation at 25 °C or 6 h desiccation at 15 °C or 25 °C) resulted in the complete inhibition, with little indication of recovery until the following morning, implying the occurrence of chronic PSII damage. Based on the magnitude of effect, desiccation was the predominant negative factor affecting the photosynthesis under the simulated daytime irradiance period. These results may explain the distribution pattern of this species in natural habitats, where it is generally restricted to tide pools in the intertidal zone of wave-swept rocky shores which could provide shelter from desiccation stress during low tide.     

Carbon fluxes through major phytoplankton groups during the spring bloom and post-bloom in the Northwestern Mediterranean Sea

The carbon flux through major phytoplankton groups, defined by their pigment markers, was estimated in two contrasting conditions of the Northwestern Mediterranean open ocean ecosystem: the spring bloom and post-bloom situations (hereafter Bloom and Post-bloom, respectively). During Bloom, surface chlorophyll a (Chl a) concentration was higher and dominated by diatoms (53% of Chl a), while during Post-bloom Synechococcus (42%) and Prymnesiophyceae (29%) became dominant. The seawater dilution technique, coupled to high pressure liquid chromatography (HPLC) analysis of pigments and flow cytometry (FCM), was used to estimate growth and grazing rates of major phytoplankton groups in surface waters. Estimated growth rates were corrected for photoacclimation based on FCM-detected changes in red fluorescence per cell. Given the 30% average decrease in the pigment content per cell between the beginning and the end of the incubations, overlooking photoacclimation would have resulted in a 0.40 d^?1 underestimation of phytoplankton growth rates. Corrected average growth rates (μ_o) were 0.90±0.20 (SD) and 0.40±0.14 d^?1 for Bloom and Post-bloom phytoplankton, respectively. Diatoms, Cryptophyceae and Synechococcus were identified as fast-growing groups and Prymnesiophyceae and Prasinophyceae as slow-growing groups across Bloom and Post-bloom conditions. The higher growth rate during Bloom was due to dominance of phytoplankton groups with higher growth rates than those dominating in Post-bloom. Average grazing rates (m) were 0.58±0.20 d^?1 (SD) and 0.31±0.07 d^?1. The proportion of phytoplankton growth consumed by microzooplankton grazing (m/μ_o) tended to be lower in Bloom (0.69±0.34) than in Post-bloom (0.80±0.08). The intensity of nutrient limitation experienced by phytoplankton indicated by μ_o/μ_n (where μ_n is the nutrient-amended growth rate), was similar during Bloom (0.78) and Post-bloom (0.73). Primary production from surface water (PP) was estimated with ¹⁴C incubations. A combination of PP and Chl a synthesis rate yielded C/Chl a ratios of 34±21 and 168±75 (g:g) for Bloom and Post-bloom, respectively. Transformation of group-specific Chl a fluxes into carbon equivalents confirmed the dominant role of diatoms during Bloom and Synechococcus and Prymnesiophyceae during Post-bloom.     

Short-term environmental variability in cold-water coral habitat at Viosca Knoll,Gulf of Mexico

The Lophelia pertusa community at Viosca Knoll (VK826) is the most extensive found to date in the Gulf of Mexico. As part of a multi-disciplinary study, the physical setting of this area was described using benthic landers, CTD transects and remotely operated vehicle observations. The site was broadly characterised into three main habitats: (1) dense coral cover that resembles biogenic reef complexes, (2) areas of sediment, and (3) authigenic carbonate blocks with sparse coral and chemosynthetic communities. The coral communities were dominated by L. pertusa but also contained numerous solitary coral species. Over areas that contained L. pertusa, the environmental conditions recorded were similar to those associated with communities in the north-eastern Atlantic, with temperature (8.5–10.6 °C) and salinity (～35) falling within the known species niche for L. pertusa. However, dissolved oxygen concentrations (2.7–2.8 ml l^?1) and density (σ_Θ, 27.1–27.2 kg m^?3) were lower and mass fluxes from sediment trap data appeared much higher (4002–4192 mg m^?2 d^?1). Yet, this species still appears to thrive in this region, suggesting that L. pertusa may not be as limited by lower dissolved oxygen concentrations as previously thought. The VK826 site experienced sustained eastward water flow of 10–30 cm s^?1 over the 5-day measurement period but was also subjected to significant short-term variability in current velocity and direction. In addition, two processes were observed that caused variability in salinity and temperature; the first was consistent with internal waves that caused temperature variations of 0.8 °C over 5–11 h periods. The second was high-frequency variability (20–30 min periods) in temperature recorded only at the ALBEX site. A further pattern observed over the coral habitat was the presence of a 24 h diel vertical migration of zooplankton that may form part of a food chain that eventually reaches the corals. The majority of detailed studies concerning local environmental conditions in L. pertusa habitats have been conducted within the north-eastern Atlantic, limiting most knowledge of the niche of this species to a single part of an ocean basin. Data presented here show that the corals at VK826 are subjected to similar conditions in temperature, salinity, and flow velocity as their counterparts in the north-east Atlantic, although values for dissolved oxygen and density (sigma-theta: σ_Θ) are different. Our data also highlight novel observations of short-term environmental variability in cold-water coral habitat.     

Lipid biomarkers in suspended particles from a subtropical estuary: Assessment of seasonal changes in sources and transport of organic matter

Temporal and spatial variations in the composition of particulate organic matter (POM) from Florida Bay, USA were examined. The predominance of short-chain homologues for n-alkanes, n-alcohols and n-fatty acids as well as relatively high abundance of C₂₇ and C₂₈ sterols suggested that an autochthonous/marine source of OM was dominant bay-wide. Several biomarker proxies such as P_aq [(C₂₃ + C₂₅)/(C₂₃ + C₂₅ + C₂₉ + C₃₁) n-alkanes], short/long chain n-alkanes, (C₂₉ + C₃₁) n-alkanes and taraxerol indicated a spatial shift in OM sources, where terrestrial OM rapidly decreased while seagrass and microbial OM markedly increased along a northeastern to southwestern transect. Regarding seasonal variations, POM collected during the dry season was enriched in terrestrial constituents relative to the wet season, likely as a result of reduced primary productivity of planktonic species and seagrasses during the dry season. Principal component analysis (PCA) classified the sample set into sub-groups based on PC1 which seemed to be spatially controlled by OM origin (terrestrial-mangrove vs. marine-planktonic/seagrass). The PC2 seemed to be more seasonally controlled suggesting that hydrological fluctuations and seasonal primary productivity are the drivers controlling the POM composition in Florida Bay.     

PCBs in the fish assemblage of a southern European estuary

The Mondego estuary fish assemblage was studied for the accumulation of PCBs. Three sampling stations were visited along an estuarine salinity gradient, and, in total, 15 species were collected. Analysis of PCBs revealed no significant differences among the sampling stations, although differences were observed among the fish assemblages. Fish assemblages could be divided into three groups. The first group comprised those with higher concentration (more than 10 ng g^− 1, dw), included the species Gobius niger, Sardina pilchardus, Anguilla anguilla, Pomatoschistus microps, Chelidonichthys lucerna and Liza ramada; the second group with medium concentration (5–10 ng g^− 1, dw), included the species Pomatoschistus minutus, Dicentrarchus labrax, Atherina presbyter, Chelon labrosus, Diplodus vulgaris, Platichthys flesus and Cilata mustela; and a third group with low concentration (less than 5 ng g^− 1, dw), included the species Solea solea and Callionymus lyra. A positive correlation was found between lipid content and PCB concentrations. To evaluate the influence of the residence time of species on the accumulation of PCBs, species were divided into two groups: species that spend more than 3 years in the estuary, and species that spend less than 3 years in the estuary. Species that spend more than 3 years in the estuary presented higher concentrations than species that spend less than 3 years in the estuary. CBs 138 and 153 had higher concentration, and tended to increase with time spent in the estuary.     

Kinetic study reveals weak Fe-binding ligand,which affects the solubility of Fe in the Scheldt estuary

The chemistry of dissolved Fe(III) was studied in the Scheldt estuary (The Netherlands). Two discrete size fractions of the dissolved bulk (< 0.2 μm and < 1 kDa) were considered at three salinities (S = 26, 10 and 0.3).Within the upper estuary, where fresh river water meets seawater, the dissolved Fe concentration decreases steeply with increasing salinity, for the fraction < 0.2 μm from 536 nM at S = 0.3 to 104 nM at S = 10 and for the fraction < 1 kDa from 102 nM to 36 nM Fe. Further downstream, in the middle and lower estuary, this decrease in the Fe concentration continues, but is far less pronounced. For all samples, the traditionally recognised dissolved strong organic Fe-binding ligand concentrations are lower than the dissolved Fe concentrations.Characteristics of dissolved Fe-binding ligands were determined by observing kinetic interactions with adsorptive cathodic stripping voltammetry. From these kinetic experiments we concluded that apart from the well-known strong Fe-binding organic ligands (L, logK′ = 19–22) also weak Fe-binding ligands (P) existed with an α value (binding potential = K′ · [P]) varying between 10^11.1 and 10^11.9. The presence of this relatively weak ligand explained the high concentrations of labile Fe present in both size fractions in the estuary. This weak ligand can retard or prevent a direct precipitation after an extra input of Fe.The dissociation rate constants of the weak ligand varied between 0.5 × 10^− 4 and 4.3 × 10^− 4 s^− 1. The rate constants of the strong organic ligand varied between k_d = 1.5 × 10^− 3–17 × 10^− 2 s^− 1 and k_f = 2.2 × 10⁸–2.7 × 10⁹ M^− 1 s^− 1. The dissociation rate constant of freshly amorphous Fe-hydroxide was found to be between 4.3 × 10^− 4 and 3.7 × 10^− 3 s^− 1, more labile or equal to the values found by Rose and Waite [Rose, A.L., Waite, T.D., 2003a. Kinetics of hydrolysis and precipitation of ferric iron in seawater. Environ. Sci. Technol., 37, 3897–3903.] for freshly precipitated Fe in seawater.Kinetic rate constants of Fe with the ligand TAC (2-(2-Thiazolylazo)-p-cresol) were also determined. The formation rate constant of Fe(TAC)₂ varied between 0.1 × 10⁸ and 3.6 × 10⁸ M^− 1 s^− 1, the dissociation rate constant between 0.2 × 10^− 5 and 17 × 10^− 5 s^− 1 for both S = 26 and S = 10. The conditional stability constant of Fe(TAC)₂ (β_Fe(TAC)2′) varied between 22 and 23.4 for S = 10 and S = 26 more or less equal to that known from the literature (logβ_Fe(TAC)2′ = 22.4; [Croot, P.L., Johansson, M., 2000. Determination of iron speciation by cathodic stripping voltammetry in seawater using the competing ligand 2-(2-Thiazolylazo)-p-cresol (TAC). Electroanalysis, 12, 565–576.]). However, at S = 0.3 the logβ_Fe(TAC)2′ was 25.3, three orders of magnitude higher. Apparently the application of TAC to samples of low salinity can only be done when the correct β_Fe(TAC)2′ is known.     

Mesozooplankton in the Arctic Ocean in summer

The biomass, species and chemical composition of the mesozooplankton and their impact on lower food levels were estimated along a transect across the Arctic Ocean. Mesozooplankton biomass in the upper 200 m of the water column was significantly higher (19–42 mg DW m^-3) than has previously been reported for the Arctic Ocean, and it reached a maximum at ca. 87°N in the Amundsen Basin. The lowest values were recorded in the Chukchi Sea and Nansen Basin, where ice cover was lower (50–80%) than in the central Arctic Ocean. In the deeper strata (200–500 m) of the Canadian and Eurasian Basins, the biomass was always much lower (4.35–16.44 mg DW m^-3). The C/N (g/g) ratio for the mesozooplankton population was high (6.5–8.5) but within the documented range. These high values (when compared to 4.5 at lower latitudes) may be explained by the high lipid content. Mesozooplankton accounted for approximately 40% of the total particulate organic carbon in the upper 100 m of the water column. Mesozooplankton species composition was homogeneous along the transect, consisting mainly of copepods (70–90% of the total number). It was dominated by four large copepod species (Calanus hyperboreus, C. glacialis, C. finmarchicus and Metridia longa), which together accounted for more than 80% of the total biomass. According to measurements of gut pigment and gut turnover rates, the mesozooplankton on average ingested between 6 and 30% of their body carbon per day as phytoplankton. Microzooplankton may have provided an additional source of energy for the mesozooplankton community. These data emphasize the importance of mesozooplankton in the arctic food web and reinforce the idea that the Arctic Ocean should no longer be considered to be a “biological desert”.     

Air–sea CO2 fluxes in the north-eastern shelf of the Gulf of Cádiz (southwest Iberian Peninsula)

An intra-annual investigation of the fugacity of CO₂ (fCO₂) has been conducted in surface waters of the north-eastern shelf of the Gulf of Cádiz (SW Iberian Peninsula) in four cruises made in 2006 and 2007. Intra-annual variability of fCO₂ was assessed and is discussed in terms of mixing, temperature and biology. In the study area of the shelf, thermodynamic control over fCO₂ predominates from early May to late November, and this is opposite and similar in magnitude to the net biological effect. However, biological control over fCO₂ predominates during winter. The results suggest that surface waters in the coastal area are under-saturated with respect to atmospheric CO₂ during most of the year; therefore they represent a sink for atmospheric CO₂ between November and May (? 1.0 mmol m^? 2 day^? 1), but a weak source in June (1.3 mmol m^? 2 day^? 1). In contrast, the coastal ecosystems studied (the lower estuary of Guadalquivir Estuary and Bay of Cádiz) acted as a weak sink for atmospheric CO₂ during February (? 1.3 mmol m^? 2 day^? 1) and as a source between May and November (2.6 mmol m^? 2 day^? 1). The resulting mean annual CO₂ flux in the north-eastern shelf of the Gulf of Cádiz was ? 0.07 mol m^? 2 year^? 1 (? 0.2 mmol m^? 2 day^? 1), indicating that the area acts as a net sink on an annual basis.     

Abundance of small individuals influences the effectiveness of processing techniques for deep-sea nematodes

Nematodes are the most abundant metazoans of deep-sea benthic communities, but knowledge of their distribution is limited relative to larger organisms. Whilst some aspects of nematode processing techniques, such as extraction, have been extensively studied, other key elements have attracted little attention. We compared the effect of (1) mesh size (63, 45, and 32 μm) on estimates of nematode abundance, biomass, and body size, and (2) microscope magnification (50× and 100×) on estimates of nematode abundance at bathyal sites (250–3100 m water depth) on the Challenger Plateau and Chatham Rise, south-west Pacific Ocean. Variation in the effectiveness of these techniques was assessed in relation to nematode body size and environmental parameters (water depth, sediment organic matter content, %silt/clay, and chloroplastic pigments). The 63-μm mesh retained a relatively low proportion of total nematode abundance (mean±SD=55±9%), but most of nematode biomass (90±4%). The proportion of nematode abundance retained on the 45-μm mesh in surface (0–1 cm) and subsurface (1–5 cm) sediment was significantly correlated (P<0.01) with %silt/clay (R²=0.39) and chloroplastic pigments (R²=0.29), respectively. Variation in median nematode body weight showed similar trends, but relationships between mean nematode body weight and environmental parameters were either relatively weak (subsurface sediment) or not significant (surface sediment). Using a low magnification led to significantly lower (on average by 43%) nematode abundance estimates relative to high magnification (P<0.001), and the magnitude of this difference was significantly correlated (P<0.05) with total nematode abundance (R²_p=0.53) and the number of small (≤250 μm length) individuals (R²_p=0.05). Our results suggest that organic matter input and sediment characteristics influence the abundance of small nematodes in bathyal communities. The abundance of small individuals can, in turn, influence abundance estimates obtained using different mesh sizes and microscope magnifications.     

Late Cretaceous (Late Turonian,Coniacian and Santonian) petroleum source rocks as part of an OAE,Tarfaya Basin,Morocco

Late Turonian, Coniacian and Santonian source rock samples from a recently drilled well (Tafaya Sondage No. 2; 2010) in the Tarfaya Basin were analyzed for quantity, quality, maturity and depositional environment of the organic matter (OM). To our knowledge such a thick sequence of organic matter-rich Turonian to Santonian source rocks was investigated in that great detail for the first time. Organic geochemical and organic petrological investigations were carried out on a large sample set from the 200 m thick sequence. In total 195 core samples were analyzed for total organic carbon (C_org), total inorganic carbon contents and total sulfur (TS) contents. Rock-Eval pyrolysis and vitrinite reflectance measurements were performed on 28 samples chosen on the basis of their C_org content. Non-aromatic hydrocarbons were analyzed on selected samples by way of gas chromatography–flame ionization detection (GC–FID) and GC–mass spectrometry (GC–MS). The organic matter-rich carbonates revealed a high source rock potential, representing type I kerogen and a good preservation of the organic matter, which is mainly of marine (phytoplankton) origin. HI values are high (400–900 mg/g C_org) and in a similar range as those described for more recent upwelling sediments along the continental slope of North Africa. TS/C_org ratios as well as pristane over phytane ratios indicate variable oxygen content during sediment deposition. All samples are clearly immature with respect to petroleum generation which is supported by maturity parameters such as vitrinite reflectance (0.3–0.4%), T_max values (401–423 °C), production indices (S₁/(S₁ + S₂) > 0.1) as well as maturity parameters based on ratios of specific steranes and hopanes.     

Respiration,mineralization, and biochemical properties of the particulate matter in the southern Nansen Basin water column in April 1981

Determinations of the activity of the respiratory electron transport system (ETS), during the FRAM III expedition permit us to estimate oxygen utilization rates (R_O2) from the surface to 2000 m under the polar pack ice in the Nansen Basin just north of Svalbard (83°N, 7°E) during April 1981. We found R_O2 at in situ temperatures ranging from 20 pM O₂ min⁻¹ just below the ice to 0.2 pM O₂ min⁻¹ at 2000 m. These rates are low compared to most other ocean regions, but they could decrease particulate organic carbon and nitrogen by 76% and 74%, respectively, over a period of ∼6 months. The R_O2 calculations based on measurements made at 0 °C yielded a power function of R_O2 vs. depth (Z) of R_O2=67Z^−0.5534. When this R_O2 profile was superimposed on a more recent oxygen utilization rate profile made using the ³He–³H–AOU method (OUR), in the same vicinity of the Nansen Basin during 1987 (OUR=52Z^–0.4058, [Zheng, Y., Schlosser, P., Swift, J.W., Jones, E.P., 1997. Oxygen utilization rates in the Nansen Basin, Arctic Ocean: implications for new production. Deep Sea Research I 44, 1923–1943]), the agreement of the two profiles was close. On one hand, this was to be expected because R_O2 is the biological basis of OUR, on the other hand, it was a surprise because the methodologies are so different. Nitrate mineralization obtained from ETS activities also compared favorably with calculations based on the data of Zheng et al. [1997. Oxygen utilization rates in the Nansen Basin, Arctic Ocean: implications for new production. Deep Sea Research I 44, 1923–1943]. Chlorophyll ranged from 6 ng L⁻¹ at 5 m to 0.06 ng L⁻¹ at 2000 m. Particulate organic carbon (POC) decreased from 0.93 μM C just below the ice to less than 0.4 μM C at 500 m. Particulate organic nitrogen (PON) was not detectable below 70 m, however in the upper 70 m it ranged from 0.16 to 0.04 μM N. The C/N mass ratio over these depths ranged from 5.8 to 11.3. Annual carbon productivity as calculated to balance the total water column respiration was 27 g C m⁻² y⁻¹. The integrated respiration rate between 50 and 4000 m suggests that exported production and carbon flux from the 50 m level was 24 g C m⁻² y⁻¹. These are minimal estimates for the southern Nansen Basin because they are based on measurements made at the end of the Arctic winter.     

Population ecology and habitat preferences of juvenile flounder Platichthys flesus (Actinopterygii: Pleuronectidae) in a temperate estuary

The European flounder Platichthys flesus is a widely distributed epibenthic species and an important component of demersal fish assemblages in the European Atlantic coastal waters. In Portuguese estuaries, this species reaches high densities, especially in Minho estuary (NW Iberian Peninsula, Europe), potentially playing an important role in the system's ecology. In this context, the population structure, production and the habitat use of juvenile P. flesus were investigated. Sampling took place monthly, from February 2009 until July 2010 along the entire estuarine gradient (5 sampling stations distributed in the first 29 km from the river mouth, with S1 located near the river mouth, S2 inside a salt marsh, S3 in a salinity transition zone, while S4 and S5 were located in the upper estuary). Flounder's density varied significantly among sampling stations and seasons (two-way PERMANOVA: p < 0.001), with the majority of the individuals being found during the spring (30.1%) and in S3 and S4 (72.6%). Males and females presented an even distribution, with a higher proportion of males observed during summer. Fish length also differed among sampling stations and seasons (two-way PERMANOVA: p < 0.001), with larger fishes being found in S1 during the autumn (168.50 ± 59.50 mm) and the smallest in S4 during the spring (33.80 ± 3.12 mm). Size classes associated differently with environmental variables, with larger juveniles being more abundant in the downstream areas of the estuary, whereas smaller juveniles were related to higher water temperatures, suggesting a habitat segregation of P. flesus of different sizes. The fish condition of P. flesus in Minho estuary was higher than in other systems, probably due to the dominance of juveniles on the population. Also, the densities found in this estuary were up to 32 times higher than in other locations, suggesting that Minho estuary is an important nursery area for the species. The estimated secondary production of P. flesus was lower than previous studies acknowledged in the system (0.037 g.WWm^− 2.year^− 1), indicating that the production estimates of this species in estuaries can vary considerably depending on of several factors such as the sampling year and strategy, population and fish size.