Impacts of Coastal Land Use and Shoreline Armoring on Estuarine Ecosystems: an Introduction to a Special Issue

The nearshore land-water interface is an important ecological zone that faces anthropogenic pressure from development in coastal regions throughout the world. Coastal waters and estuaries like Chesapeake Bay receive and process land discharges loaded with anthropogenic nutrients and other pollutants that cause eutrophication, hypoxia, and other damage to shallow-water ecosystems. In addition, shorelines are increasingly armored with bulkhead (seawall), riprap, and other structures to protect human infrastructure against the threats of sea-level rise, storm surge, and erosion. Armoring can further influence estuarine and nearshore marine ecosystem functions by degrading water quality, spreading invasive species, and destroying ecologically valuable habitat. These detrimental effects on ecosystem function have ramifications for ecologically and economically important flora and fauna. This special issue of Estuaries and Coasts explores the interacting effects of coastal land use and shoreline armoring on estuarine and coastal marine ecosystems. The majority of papers focus on the Chesapeake Bay region, USA, where 50 major tributaries and an extensive watershed (~ 167,000 km²), provide an ideal model to examine the impacts of human activities at scales ranging from the local shoreline to the entire watershed. The papers consider the influence of watershed land use and natural versus armored shorelines on ecosystem properties and processes as well as on key natural resources.     

Spatial Distribution and Long-term Movement Patterns of Cownose Rays Rhinoptera bonasus Within an Estuarine River

Passive acoustic telemetry was used to monitor the movements of cownose rays (Rhinoptera bonasus) within the Caloosahatchee River estuary in Southwest Florida. Twelve rays were tracked within the river between January 2004 and May 2005 for periods up to 234 days. Linear home range was calculated for all individuals and ranged between 0 and 18.4 km (daily) and 1 and 22.3 km (overall). Ray position within the river was compared to changing water quality parameters throughout the study. Although home range size did not increase with increasing salinity, individuals did occur farther upriver with decreasing flow rates and increasing salinity. There were no differences detected between day and night distribution patterns. Movement and presence patterns demonstrated significant use of the estuarine river over all months, indicating that cownose rays in southwest Florida may not undertake long seasonal migrations as established for other parts of their range.     

The Charisma of Coastal Ecosystems: Addressing the Imbalance

Coastal ecosystems including coral reefs, mangrove forests, seagrass meadows, and salt marshes are being lost at alarming rates, and increased scientific understanding of causes has failed to stem these losses. Coastal habitats receive contrasting research effort, with 60% of all of the published research carried out on coral reefs, compared to 11–14% of the records for each of salt marshes, mangrove forests, and seagrass meadows. In addition, these highly connected and interdependent coastal ecosystems receive widely contrasting media attention that is disproportional to their scientific attention. Seagrass ecosystems receive the least attention in the media (1.3% of the media reports) with greater attention on salt marshes (6.5%), considerably more attention on mangroves (20%), and a dominant focus on coral reefs, which are the subject of three in every four media reports on coastal ecosystems (72.5%). There are approximately tenfold lower reports on seagrass meadows in the media for every scientific paper published (ten), than the 130–150 media reports per scientific paper for mangroves and coral reefs. The lack of public awareness of losses of less charismatic ecosystems results in the continuation of detrimental practices and therefore contributes to continued declines of coastal ecosystems. More effective communication of scientific knowledge about these uncharismatic but ecologically important coastal habitats is required. Effective use of formal (e.g., school curricula, media) and informal (e.g., web) education avenues and an effective partnership between scientists and media communicators are essential to raise public awareness of issues, concerns, and solutions within coastal ecosystems. Only increased public understanding can ultimately inform and motivate effective management of these ecologically important coastal ecosystems.     

Estuarine benthos: Long-term community structure variations,corpus Christi Bay,Texas

A study of the benthic communities in Corpus Christi Bay was carried out between 1974 and 1979 to identify both natural and human-induced variations in community dynamics of the benthos over a long time period of monthly samples collection. General results of the investigation were comparable to previous shorter-term studies of this estuary in respect to species list of dominant fauna, total densities and species diversity measures. The present study emphasized two habitats: a channel 15 m deep and a shoal less than 3.5 m deep. Channel stations exhibited lower species numbers, densities, and species diversity than shoal sites but in contrast showed more even distributions of population numbers between species (equitability) than shoal sites. Hierarchical classification procedures identified community structure patterns that were associated with a major disturbance to the area, dredging, as well as minor, more frequent disturbances associated with large ship traffic and shrimp trawling activities in the channel. The community variable of species number and total density were also related to changes in salinity patterns in the study area. The results of this long-term study illustrated the resilience of benthic communities to disturbance. They also provided supportive evidence to hypotheses concerning the high resistence of communities to disturbance in inconstant environments and the source of colonists in these environments after a major disturbance to the bottom.     

河口海岸GIS时空过程可视化表达

河口海岸带中一些随时间变化的三维海洋现象(如涡漩、锋面、水团等)的时空建模与可视化表达是海洋地理信息系统(MGIS)发展的一大难题。基于流体建模与可视化AVIZO Green技术,针对海洋连续场中的三维海洋现象,提出了基于特征的时空三域动态识别技术,设计并实现了面向主题应用的时空四维GIS可视化框架,能够有效表达三维海洋现象。以长江口海岸带涡漩、冲淡水、羽状锋和盐跃层为例进行三维动态可视模拟,直观再现了object-like型和field-like型海洋现象的时空演绎过程,为海洋现象仿真研究,尤其是多维、动态、边界模糊的复杂海洋现象的有效表达提供了一种新思路和方法。     

The Invasive Species Challenge in Estuarine and Coastal Environments: Marrying Management and Science

Despite the widely acknowledged threat posed by invasive species in coastal estuaries, there are substantial gaps at the intersection of science and policy that are impeding invasive species management. In the face of pressing management needs in coastal and estuarine environments, we advocate that introduced species should receive the kind of management effort dedicated, for example, to reducing pollution. We support our argument with some examples of economic costs of estuarine and coastal introduced species and a summary of recent evidence for the ecological costs. We highlight some of the issues that either thwart or facilitate the successful marriage between science and management of introduced species, including the regulatory framework for management. We use the available information on coastal eradication programs, including case histories of the programs for Caulerpa taxifolia and Spartina alterniflora (and hybrids) in the western USA, to indicate the feasibility of managing introduced species and to help point out how management and science can improve the outcome. We close with a research agenda that focuses primarily on science that will really assist with invasive species management and reflects our own experience and the opinions of managers directly involved with this issue.     

Evaluating Adaptive Processes for Conservation and Management of Estuarine and Coastal Resources

This special feature: Genetic Structure and Adaptation in Coastal Ecosystems emphasizes the importance of research focused on population genetic structure and evolutionary change for understanding estuarine and coastal communities. Many studies have examined the effect of environmental gradients on community-level patterns in estuarine habitats; however, relatively little is known about the role of genetically based adaptation (the heritable response to these environmental gradients) in these organisms. This special feature presents 11 studies that use a variety of approaches including ecophysiology, ecological genetics, molecular markers, and patterns of gene expression occurring within these populations. These studies provide examples of the role of genetic diversity and adaptation across a diversity of estuarine and coastal environments, and highlight the temporal and spatial scales at which adaptation impinges upon management. This collection of papers is especially timely, given the increasing importance of understanding and predicting the response to global climate change in order to effectively manage these communities.     

Fish-Habitat Relationships Along the Estuarine Gradient of the Sacramento-San Joaquin Delta,California: Implications for Habitat Restoration

Estuaries are highly variable environments where fish are subjected to a diverse suite of habitat features (e.g., water quality gradients, physical structure) that filter local assemblages from a broader, regional species pool. Tidal, climatological, and oceanographic phenomena drive water quality gradients and, ultimately, expose individuals to other habitat features (e.g., stationary physical or biological elements, such as bathymetry or vegetation). Relationships between fish abundances, water quality gradients, and other habitat features in the Sacramento-San Joaquin Delta were examined as a case example to learn how habitat features serve as filters to structure local assemblages in large river-dominated estuaries. Fish communities were sampled in four tidal lakes along the estuarine gradient during summer-fall 2010 and 2011 and relationships with habitat features explored using ordination and generalized linear mixed models (GLMMs). Based on ordination results, landscape-level gradients in salinity, turbidity, and elevation were associated with distinct fish assemblages among tidal lakes. Native fishes were associated with increased salinity and turbidity, and decreased elevation. Within tidal lakes, GLMM results demonstrated that submersed aquatic vegetation density was the dominant driver of individual fish species densities. Both native and non-native species were associated with submersed aquatic vegetation, although native and non-native fish populations only minimally overlapped. These results help to provide a framework for predicting fish species assemblages in novel or changing habitats as they indicate that species assemblages are driven by a combination of location within the estuarine gradient and site-specific habitat features.     

贝叶斯判别分析在中长期径流预报中的应用研究

基于贝叶斯判别分析原理,考虑径流形成的特点及物理成因,选择研究区碧流河水库1959~2011年的实测资料,且将径流分为5个级别,用相关系数模型,考虑因子的不确定性,筛选出相关性高、彼此间独立性强的10个判别因子,分别构建基于朴素贝叶斯分类器(N-Bayes)和贝叶斯判别准则(DBayes)的年径流属性级别预报模型,并利用研究区2001~2011年资料进行了试报和检验。预报结果表明:两种模型的预报结果相近,准确率均超过70%,D-Bayes的预报效果略优于N-Bayes,初步说明:贝叶斯判别分析原理在水文预报中的应用,有着较好的前景。     

Assessment of Plant Community Characteristics in Natural and Human-Altered Coastal Marsh Ecosystems

Salt marsh ecosystems provide many critical ecological functions, yet they are subject to considerable disturbance ranging from direct human alteration to increased inundation due to climate change. We assessed emergent salt marsh plant characteristics in the Tuckerton Peninsula, a large expanse (~ 2000 ha) of highly inundated habitat along the southern New Jersey coast, USA. Key salt marsh plant parameters were monitored in the heavily grid-ditched northern segment, Open Marsh Water Management (OMWM) altered central segment, and the shoreline altered southern segment of the peninsula in the summer months of 2011 and 2013. Plant species composition and three metrics of abundance and structure (maximum canopy height, percent areal cover, and shoot density) were examined among marsh segments, along transects within segments, seasonally by month and between years. Despite seasonal or annual variability, the northern segment of the marsh differed in plant species composition from the central and southern segments. This difference was partly due to greater percent areal cover in the northern segment of upper marsh species such as Spartina patens and Distichlis spicata. S. patens also exhibited higher shoot densities in the northern segment than the central segment. Despite the higher abundance of upper marsh species, marsh surface elevations were lower in the northern segment than in the central or southern segments, suggesting the influence of altered hydrology due to human activities. Understanding current variation in the emergent salt marsh vegetation along the peninsula will help inform future habitat change in other coastal wetlands of New Jersey and the mid-Atlantic region subject to natural and anthropogenic drivers.     

Estimates of Natural Salinity and Hydrology in a Subtropical Estuarine Ecosystem: Implications for Greater Everglades Restoration

Disruption of the natural patterns of freshwater flow into estuarine ecosystems occurred in many locations around the world beginning in the twentieth century. To effectively restore these systems, establishing a pre-alteration perspective allows managers to develop science-based restoration targets for salinity and hydrology. This paper describes a process to develop targets based on natural hydrologic functions by coupling paleoecology and regression models using the subtropical Greater Everglades Ecosystem as an example. Paleoecological investigations characterize the circa 1900 CE (pre-alteration) salinity regime in Florida Bay based on molluscan remains in sediment cores. These paleosalinity estimates are converted into time series estimates of paleo-based salinity, stage, and flow using numeric and statistical models. Model outputs are weighted using the mean square error statistic and then combined. Results indicate that, in the absence of water management, salinity in Florida Bay would be about 3 to 9 salinity units lower than current conditions. To achieve this target, upstream freshwater levels must be about 0.25 m higher than indicated by recent observed data, with increased flow inputs to Florida Bay between 2.1 and 3.7 times existing flows. This flow deficit is comparable to the average volume of water currently being diverted from the Everglades ecosystem by water management. The products (paleo-based Florida Bay salinity and upstream hydrology) provide estimates of pre-alteration hydrology and salinity that represent target restoration conditions. This method can be applied to any estuarine ecosystem with available paleoecologic data and empirical and/or model-based hydrologic data.     

Worldwide Typology of Nearshore Coastal Systems: Defining the Estuarine Filter of River Inputs to the Oceans

We present a spatially explicit global overview of nearshore coastal types, based on hydrological, lithological and morphological criteria. A total of four main operational types act as active filters of both dissolved and suspended material entering the ocean from land: small deltas (type I), tidal systems (II), lagoons (III) and fjords (IV). Large rivers (V) largely bypass the nearshore filter, while karstic (VI) and arheic coasts (VII) act as inactive filters. This typology provides new insight into the spatial distribution and inherent heterogeneity of estuarine filters worldwide. The relative importance of each type at the global scale is calculated and types I, II, III and IV account for 32%, 22%, 8% and 26% of the global coastline, respectively, while 12% have a very limited nearshore coastal filter. As an application of this typology, the global estuarine surface area is re-estimated to 1.1 × 10⁶ km² instead of 1.4 × 10⁶ km² in earlier work.     

Oxygen and Nutrient Exchanges at the Sediment-Water Interface: a Global Synthesis and Critique of Estuarine and Coastal Data

Estuarine and coastal marine sediment-water fluxes are considered to be important ecological features, but a global-scale assessment has yet to be developed. Goals of this work were to assemble a global-scale database of net sediment-water flux measurements, examine measurement techniques, characterize the geographic distribution and magnitude of sediment fluxes, explore the data for controls on sediment flux magnitude, and assess the importance of sediment fluxes in ecosystem-level metabolism and primary production. We examined 480 peer-reviewed sources and found sediment flux data for 167 estuarine and coastal systems. Most measurements were made in North America, Europe, and Australia. Fluxes varied widely among systems, some by several orders of magnitude. Inter-annual variability within sites was less than an order of magnitude but time series flux data to evaluate this were rare. However, limited time series data exhibited large and rapid responses to decreased external nutrient loading rates, climate change effects (possible temperature effects), and variability in trophic conditions. Comparative analyses indicated organic matter supply to sediments set the upper limits of flux magnitude, with other factors playing secondary roles. Two metrics were developed to assess ecosystem-level importance of sediment-water fluxes. Sediments represented 30% or more of depth-integrated rates of aerobic system respiration at depths of <10 m. An annual phytoplankton production data set was used to estimate N and P demand; sediments supplied an average of 15–32% of N and 17–100% of P demand and, in some cases, was as large or larger than external nutrient inputs. The percent of demand supplied by sediments was highest in temperate latitudes and lower in high and tropical latitudes.     

Doubt and the Values of an Ignorance-Based World View for Restoration: Coastal Louisiana Wetlands

Embracing doubt, a signature strength of science, is an essential core component of an ignorance-based-world view (IBWV) that assumes the areas of certainty are small relative to the large field of ignorance. The contrasting knowledge-based world view (KBWV) assumes that small and mostly insignificant knowledge gaps exist. When the KBWV is combined with a sense of urgency to “do something,” then the intellectual landscape is flattened, the introduction of new ideas is impeded, monitoring and adaptive management is marginalized, risky behaviors continue, and social learning is restricted. The history of three coastal Louisiana land-uses (agricultural impoundment, marsh management, and dredging) is one of ignored and untested assumptions that might have provided a cause-and-effect means to avoid catastrophic land losses—the result of a KBWV that remains the primary perspective of Louisiana’s current coastal restoration and management program that includes river diversions and a proposed expansion of hurricane protection levees into wetlands. I argue from the pathology of results that willful adoption of an IBWV in the administration, management, and implementation of restoration will reduce the scale and diversity of significant missteps in the future, improve project efficiencies, and cause fewer unintended consequences that cannot (again) be retracted.     

Patterns and Rates of Recovery of Macrobenthic Communities in a Polyhaline Temperate Estuary Following Sediment Disturbance: Effects of Disturbance Severity and Potential Importance of Non-local Processes

Community-level responses of soft sediment macrobenthos to two relatively large-scale disturbance events associated with dredged material (DM) disposal are examined for subtidal (>10 m) lower Chesapeake Bay. Disturbance severity (DM thickness on initial sampling date following disposal) and date of sampling were important factors explaining the patterns and rates of recovery for species richness, abundance, biomass, and community composition, but sediment disposal had minimal effects when DM thickness was ≤15 cm. It took 1.5 years or less following the cessation of disposal activities for richness, abundance, biomass and community composition at high disposal severity (DM > 15 cm) to attain levels measured at reference stations representing the ambient community of the region. Positive correlations of community structure metrics between the disposal area and reference stations provide evidence that non-local processes influenced patterns of recovery in this estuarine setting. Species interactions and food limitation may also have been important at local scales.