Holocene flooding history of the Lower Tagus Valley (Portugal)

The present paper aims to reconstruct the Lower Tagus Valley flooding history for the last ca. 6500 a, to explore the suitability of pollen‐based local vegetation development in supporting the reconstruction of flooding history, and to explain fluvial activity changes in terms of allogenic (climate, human impact) and autogenic (system intrinsic) processes. The flooding history has been determined by cored sedimentary records located ～18 km apart in distal, low‐energy backswamps on both sides of the Tagus channel. In these low‐energy backswamps, fine‐grained sediment layers deposited from suspended load of overbank flood water reflect periods with multiple overbank floods. By means of a multi‐proxy approach (sedimentology, magnetic susceptibility, grain size, loss‐on‐ignition, carbonate content and pollen), sedimentary and environmental changes were identified. At both sites, synchronous lithological intervals accumulated, suggesting a common origin for the changes in fluvial activity since ca. 6500 cal. a BP. Based on lithological changes, three phases of high fluvial activity (6500–5500, 4900–3500 and 1000–0 cal. a BP) and two phases of low fluvial activity (5500–4900 and 3500–1000 cal. a BP) were identified. Two periods with dominant allogenic controls on fluvial activity in the Lower Tagus Valley were identified: relative sea level (6500–5500 cal. a BP) and human impact (1000–0 cal. a BP). During the intermediate period, changes in fluvial activity may have been caused by climate (5500–1000 cal. BP), but unambiguous correlations are difficult to make. This is due to the way allogenic controls are translated through the fluvial system, the geomorphological differences between upstream and downstream studies and autogenic processes. The comparison of local vegetation development and flooding phases as reconstructed using sedimentology shows a limited added value of using local palynology as a proxy for fluvial activity. Copyright © 2010 John Wiley & Sons, Ltd.     

The pathway of mercury in contaminated waters determined by association with organic carbon (Tagus Estuary,Portugal)

Reactive dissolved Hg (Hg_R), non-reactive dissolved Hg (Hg_NR), particulate Hg (Hg_P), dissolved organic C (DOC), particulate organic C (POC), salinity and other interpretative parameters were determined in water samples collected in the North Channel and in adjacent areas of the Tagus estuary (Portugal). Higher concentrations of both dissolved and particulate Hg in the North Channel indicate a pollution source and raise the possibility of Hg escaping to adjacent areas by tidal action. This transport was confirmed by the increase of Hg_R with salinity and Hg_NR with DOC, along a longitudinal axis paralleling the North Channel. Apparently, Hg leaving this channel is progressively complexed by inorganic and organic ligands. Near the mouth of the estuary, values decreased reflecting dilution with seawater. Moreover the Hg_P:POC ratio also increased seaward, suggesting mixing with Hg enriched particles that escaped the North Channel, or incorporation of dissolved Hg species in river-derived particles. These results suggest that the pathway of anthropogenic Hg in contaminated waters may be identified by their enrichment in organic matter, both in the dissolved and particulate fraction.     

Redox Chemistry in the Root Zone of a Salt Marsh Sediment in the Tagus Estuary,Portugal

Measurements of O₂, Fe(II), Mn(II)and HS₅ in salt marshsediments in the Tagus Estuary, Portugal, made with a voltammetric microelectrode, reveal strong seasonal differences in pore water composition within the 20~cm deep root zone. In spring, oxygen was below detection limit except close to the sediment surface. Fe(II) was present below 5 cm in concentrations ranging from detection limit to 1700 M. In summer, oxygen was present in the pore water almost to the bottom of the root zone in concentrations ranging from detection limit to more than 100 M. The spatial variability was intense: O₂ concentrations as high as 78 M and as low as 25 M existed within 2~mm of each other. Fe(II) was below detection limit except towards the bottom of the root zone. In late fall, oxygen was found to 8 cm depth, but in concentrations lower than in summer, and Fe(II) was present below 9 cm. Mn(II) was found at levels declining from typical values of 200 M in spring to less than 20 M in late fall. With one exception, sulfide was below the detection limit in all measurements. During periods when dissolved Fe(II) is available in the pore water at the same time as ₂ is delivered by roots, iron-rich concretions can form on roots. These conditions, which lead to precipitation of iron oxide in the sediment adjacent to roots, exist in spring, when new roots infiltrate anoxic Fe(II) containing sediment. They do not exist in summer, when dissolved Fe(II) is unavailable, or in winter, when oxygen is unavailable. The seasonal redox pattern revealed by the pore water chemistry is driven by the annual cycle of growth and decay of roots.     

Phytoplankton Spatial Variability in the River-Dominated Estuary,Apalachicola Bay,Florida

In shallow estuaries with strong river influence, the short residence time and pronounced gradients generate an environment for plankton that differs substantially in its dynamics from that of the open ocean, and the question arises “How is phytoplankton biomass affected?” This study assesses the small-scale spatial and temporal distribution of phytoplankton in Apalachicola Bay, a shallow bar-built estuary in the Florida Panhandle. Phytoplankton peaks were characterized to gain insights into the processes affecting spatial heterogeneity in biomass. Chlorophyll a (Chl a) distribution at 50-m spatial resolution was mapped using a flow-through sensor array, Dataflow©, operated from a boat that sampled four transects across the bay every 2 weeks for 16 months. Chl a peaks exceeding background concentrations had an average width of 1.3?±?0.7 km delineated by an average gradient of 3.0?±?6.0 μg Chl a L^?1 km^?1. Magnitude of E-W wind, velocity of N-S wind, tidal stage, and temperature affected peak characteristics. Phytoplankton contained in the peaks contributed 7.7?±?2.7% of the total integrated biomass observed along the transects during the study period. The river plume front was frequently a location of elevated Chl a, which shifted in response to river discharge. The results demonstrate that despite the shallow water column, river flushing, and strong wind and tidal mixing, distinct patchiness develops that should be taken into consideration in ecological studies and when assessing productivity of such ecosystems.     

Late Holocene sedimentary changes in floodplain and shelf environments of the Tagus River (Portugal)

Sedimentary changes during the last ∼2500 years have been reconstructed from cored sedimentary records from the deltaic floodplain of the Lower Tagus Valley and the Tagus mudbelt on the continental shelf offshore Lisbon. We used a multi-proxy approach consisting of sedimentology, grainsize, pollen data and magnetic susceptibility. In the floodplain grainsize coarsened and sedimentation rate and magnetic susceptibility increased during the late Holocene due to an increased flooding frequency and/or intensity. On the Tagus shelf the mudbelt grainsize fined, together with a higher sedimentation rate and increased magnetic susceptibility. The fining grainsize is explained by an increased suspended sediment flux towards the shelf and subdued winnowing. Floodplain and shelf records were correlated by radiocarbon dating and changes in sediment characteristics. We identified four depositional phases (∼2300/∼1600/∼1100/∼670 cal BP) on the floodplain and the shelf. These are tentatively explained by land-use changes in the Tagus catchment.     

Late Quaternary valley-fill succession of the Lower Tagus Valley, Portugal

The Lower Tagus Valley in Portugal contains a well-developed valley-fill succession covering the complete Late Pleistocene and Holocene periods. As large-scale stratigraphic and chronologic frameworks of the Lower Tagus Valley are not yet available, this paper describes facies, facies distribution, and sedimentary architecture of the late Quaternary valley fill. Twenty four radiocarbon ages provide a detailed chronological framework. Local factors affected the nature and architecture of the incised valley-fill succession. The valley is confined by pre-Holocene deposits and is connected with a narrow continental shelf. This configuration facilitated deep incision, which prevented large-scale marine flooding and erosion. Consequently a thick lowstand systems tract has been preserved. The unusually thick lowstand systems tract was probably formed in a previously (30,000–20,000 cal BP) incised narrow valley, when relative sea-level fall was maximal. The lowstand deposits were preserved due to subsequent rapid early Holocene relative sea-level rise and transgression, when tidal and marine environments migrated inland (transgressive systems tract). A constant sea level in the middle to late Holocene, and continuous fluvial sediment supply, caused rapid bayhead delta progradation (highstand systems tract). This study shows that the late Quaternary evolution of the Lower Tagus Valley is determined by a narrow continental shelf and deep glacial incision, rapid post-glacial relative sea-level rise, a wave-protected setting, and large fluvial sediment supply.     

The cenozoic aquifer system of the Lower Tagus Basin: a description of the hydrogeological situation in the Almada region (Portugal)

A conceptual hydrogeological model of the Mio-Pleistocene deposits in the Almada region, located in the Cenozoic aquifer system of the Lower Tagus Basin (Portugal), has been developed. Though numerous studies have been conducted on its geological features, there have not been enough hydrogeological investigations to define the origin, flow path and the groundwater quality and to understand the coexistence of overlapped interacting aquifers. Therefore, a study is presented here on the occurrences and features of groundwater resources in the Almada region based on an inventory in the field (wells, springs and boreholes), physical and chemical analyses, geologic setting, and tectonic and geomorphologic observations. This aquifer system has long been a source of concern because of the high level of extraction over the last few decades, as well as the progressive degradation of the water quality. Available groundwater resources have been affected by intensive agricultural and industrial activity, as a consequence of incorrect or non-existent hydrogeological knowledge.     

The sedimentary record of recent (last 500 years) environmental changes in the Seixal Bay marsh,Tagus estuary,Portugal

The inner Tagus estuary is essentially a sedimentation basin that receives cohesive sediment from terrestrial, marine, biological and anthropogenic sources. Three short cores from one site in a marsh area of this estuary (Seixal Bay) were analysed for sedimentary, geochemical and micropalaeontological contents (benthic foraminifera and nannoplankton). The length of the cores represents about half a millennium of sedimentation. Textural analysis suggests a highly uniform mud sedimentation for most of the cores but geochemical, mineralogical and micropaleontological results indicate climatic and environmental changes and anthropogenic disturbance. Three Foraminifera zones were identified. The lower part of the lower zone indicates sedimentation in an open channel or a lower domain of an exposed high-energy sandflat. Sediments of the upper part of the lower zone and of the middle zone were deposited in a lower-energy environment, probably associated with a sheltered, vertically aggrading mudflat located within the Seixal Bay. Biological and mineralogical indicators suggest that periods of total or partial closure of this bay occurred. Clay minerals indicate that drier and colder conditions prevailed in the lower half of this zone evolving gradually to a wetter and warmer environment towards the top. The upper zone indicates persistence of low-energy sedimentation and evolution towards the present salt-marsh conditions. Anthropogenic pollution is clear in geochemical proxies at the top of the sedimentary column and was used for dating purposes.     

Estuarine–fluvial floodplain formation in the Holocene Lower Tagus valley (Central Portugal) and implications for Quaternary fluvial system evolution

We present a brief synthesis of the Quaternary fluvial record in the Lower Tagus Basin (central Portugal), concentrating on factors controlling infill and incision. The Holocene part of the record forms the focus of this paper and guides the questioning of the basic assumptions of the established Quaternary fluvial evolution model, in particular the link between sea-level change and fluvial incision-deposition. We suggest that several incision-aggradation phases may have occurred during glacial periods. Major aggradation events may overlap with cold episodes, while incision appears to concentrate on the warming limb of climate transitions. The complex stratigraphy of the Quaternary record in the Lower Tagus valley is influenced by repeated base-level and climate changes.This paper submits the first chronostratigraphic framework for valley fill deposits in the Lower Tagus area. Sea-level rise forced aggradation and controlled deposition of the fine-grained sedimentary wedge underlying the low-gradient Lower Tagus floodplain. Investigations have focused on the lower Muge tributary, where rapidly aggrading estuarine and fluvial environments were abruptly established (∼8150 cal BP) as sea level rose. Base level at the valley mouth controlled the upstream extent of the fine-grained backfill. Tidal environments disappeared abruptly (∼5800 cal BP) when the open estuary at the Muge confluence was infilled by the Tagus River. The decrease and final still stand of sea-level rise led to floodplain stabilisation with peat (∼6400–5200 cal BP) and soil formation (∼5200–2200 cal BP). Localised renewed sedimentation (∼2200–200 cal BP) is linked to human activity.     

Environmental Forcing of Phytoplankton in a Mediterranean Estuary (Guadiana Estuary,South-western Iberia): A Decadal Study of Anthropogenic and Climatic Influences

Phytoplankton seasonal and interannual variability in the Guadiana upper estuary was analyzed during 1996–2005, a period that encompassed a climatic controlled reduction in river flow that was superimposed on the construction of a dam. Phytoplankton seasonal patterns revealed an alternation between a persistent light limitation and episodic nutrient limitation. Phytoplankton succession, with early spring diatom blooms and summer–early fall cyanobacterial blooms, was apparently driven by changes in nutrients, water temperature, and turbulence, clearly demonstrating the role of river flow and climate variability. Light intensity in the mixed layer was a prevalent driver of phytoplankton interannual variability, and the increased turbidity caused by the Alqueva dam construction was linked to pronounced decreases in chlorophyll a concentration, particularly at the start and end of the phytoplankton growing period. Decreases in annual maximum and average abundances of diatoms, green algae, and cyanobacteria were also detected. Furthermore, chlorophyll a decreases after dam filling and a decrease in turbidity may point to a shift from light limitation towards a more nutrient-limited mode in the near future.     

Quaternary Earth-science and Palaeolithic conservation initiatives in the Tejo (Tagus), Portugal: Comparison with the Lower Thames,UK

Geoconservation measures in the River Tejo, the Portuguese reach of the Tagus, are compared with those in the Thames downstream of London (UK). Both are fluvio-estuarine reaches with staircases of Pleistocene depositional terraces, each with important sedimentary, palaeontological and archaeological records. In both rivers, conservation measures are in place that aim to protect these records, promote research and inform the public. Inevitably there are differences in approach. Whereas Thames Quaternary interests are protected by a network of British statutory site designations, outreach is to the fore in the Tejo. Contrasting examples are highlighted here. The Tejo has interpretative materials in local museums and detailed explanatory displays at the low-terrace archaeo-geological site of Foz do Enxarrique, near the border with Spain, and at other sites. The Thames, in contrast, has few examples of physical outreach provision and limited formal protection for Pleistocene archaeological material outside the geological network, although extensive informal protection is provided by interaction between local geological groups and county and local-authority administrations. There is also a considerable difference in the degree of threat, with the Tejo above Lisbon being a relatively undeveloped valley, albeit with sporadic quarrying for aggregate, whereas the Lower Thames is an established area for infrastructure development, lying to the east of London, close to the river crossing of the orbital motorway. The different climate in the two regions profoundly influences the longevity of exposures in Quaternary deposits, with significant implications for management strategies. The comparison exercise reveals that each region would benefit from greater development of approaches used more prominently in the other; outreach measures in the Portuguese style would greatly enhance some of the Thames sites, but formal designation of Tejo exposures could prevent damaging operations being undertaken by owners who lack knowledge of their value, as exemplified by a case study of sites at Alpiarça, ~ 130 km upstream from Lisbon.     

Some Morphological Aspects and Hydrological Characterization of the Tagus Floods in the Santarém Region, Portugal

In Portugal, few studies have been made of the historical floods of the RiverTagus (the longest in the Iberian Peninsula). This fact led to the study of theLower Tagus (Santarém region) using written historical documents,cartographic documents and hydrological data, consisting mainly of waterlevel records. With the support of the historical documents and the analysisof all the maps, it was possible to verify that the human intervention has beenfundamental in the morphological changes of the Tagus' channel. It becameaware that the river changed from a braided to a single channel with alternatebars. From the hydrological data, return periods for the floods were determined,using the Pearson Type 3 distribution. The selection of the most important floods,from 1855 to 1998, enabled to build a ``flood hazard scale' for this region.     

Late Pleistocene and Holocene palaeogeography of the Lower Tagus Valley (Portugal): effects of relative sea level, valley morphology and sediment supply

Because of the deep glacial incision, the Lower Tagus Valley hosts a sedimentary record since 20 000 cal BP, making this a unique site along the European Atlantic margin with respect to palaeogeographic and sea level changes. Based on nine cross-sections and 55 radiocarbon dates together with a newly created relative sea level curve, we constructed five palaeogeographic maps of the infill of the Lower Tagus Valley since 20 000 cal BP. We illustrate that relative sea level rise and fluvial sediment supply were the prime forcing factors determining the depositional history and palaeogeographic changes. Around 20 000 cal BP a deeply incised braided river existed, which was directly connected to the ocean across the narrow continental shelf. After that (12 000 cal BP) the gradually moister and warmer climate caused a change to a single-channel river. During the following period (12 000–7000 cal BP) relative sea level rise resulted in a transgression in the Lower Tagus Valley and the establishment of extensive tidal environments. After relative sea level rise had ended (7000 cal BP) the valley was progressively filled by a fluvial wedge and tidally influenced bayhead delta. Since 1000 cal BP the valley-fill history was dominated by increased sediment input due to human-induced degradation of catchment slopes. Generally, climate was of subordinate importance during the entire studied period, merely causing a single-channel river resulting from the change from the cold Heinrich event 1 to the temperate Bölling–Allerød interstadial. Despite the tectonic activity in the region, neotectonic uplift or subsidence was limited, as supported by the horizontal relative sea level curve since 7000 cal BP. Neotectonics played a minor role due to the large distance from the Fennoscandian ice sheet and the narrow continental shelf, which prohibited strong glacio- and hydro-isostatic movements.     

Geochemistry of core sediments from the Middle Tagus alluvial plain (Portugal) since the last glacial: using background determination methods to outline environmental changes

This work deals with the geochemistry of the sediments from the Santarém-Entre Valas (SEV) borehole, in the middle Tagus alluvial plain in Portugal. Methods for background determination were used, notably the concentration–length and cumulative frequency methods. Both methods were in excellent agreement for the elements of interest, namely Au, As, Fe, U, Cu, Pb, Zn, Co, and Cr. With these results, five segments in the SEV borehole were identified to have higher than background values for at least two or more of these elements. The most important segment spans at least 1,500 years during the Early Holocene Warm Period, with almost all elements with anomalous values. This has been interpreted as the result of enhanced weathering of the host rocks upstream as a consequence of deglaciation since the Last Glacial Maximum and general wetter conditions known to have occurred in this region. No other segment of the core has shown a similar variety of elements with higher than background values, but the upper segments correlate with the particular mineralogy on the sediments due to the development of an estuarine environment at circa 3,000–4,000 cal. years BP. The presence of charcoal and charred organic matter during the beginning of the Bronze Age characterises the segment with the first high values of Cu, but apart from deforestation and land use that affected this region at the time, this anomaly is likely due to the chemical affinity of Cu to organic matter and not to anthropogenic activities. Finally, the upper meter of the core sediments, spanning 812 years, have a clear anthropogenic signal for Cu (also seen in other two boreholes) and systematic high values for Au (and Pb). Although Cu is surely an indication of secular agricultural practices (vineyard sulphatation), Au (and Pb) might be the natural accumulation from weathering of ancient mine wastes scattered in the Hercynian Massif upstream.     

Geophysical methods applied to fault characterization and earthquake potential assessment in the Lower Tagus Valley, Portugal

The study region is located in the Lower Tagus Valley, central Portugal, and includes a large portion of the densely populated area of Lisbon. It is characterized by a moderate seismicity with a diffuse pattern, with historical earthquakes causing many casualties, serious damage and economic losses. Occurrence of earthquakes in the area indicates the presence of seismogenic structures at depth that are deficiently known due to a thick Cenozoic sedimentary cover. The hidden character of many of the faults in the Lower Tagus Valley requires the use of indirect methodologies for their study. This paper focuses on the application of high-resolution seismic reflection method for the detection of near-surface faulting on two major tectonic structures that are hidden under the recent alluvial cover of the Tagus Valley, and that have been recognized on deep oil-industry seismic reflection profiles and/or inferred from the surface geology. These are a WNW–ESE-trending fault zone located within the Lower Tagus Cenozoic basin, across the Tagus River estuary (Porto Alto fault), and a NNE–SSW-trending reverse fault zone that borders the Cenozoic Basin at the W (Vila Franca de Xira–Lisbon fault). Vertical electrical soundings were also acquired over the seismic profiles and the refraction interpretation of the reflection data was carried out. According to the interpretation of the collected data, a complex fault pattern disrupts the near surface (first 400 m) at Porto Alto, affecting the Upper Neogene and (at least for one fault) the Quaternary, with a normal offset component. The consistency with the previous oil-industry profiles interpretation supports the location and geometry of this fault zone. Concerning the second structure, two major faults were detected north of Vila Franca de Xira, supporting the extension of the Vila Franca de Xira–Lisbon fault zone northwards. One of these faults presents a reverse geometry apparently displacing Holocene alluvium. Vertical offsets of the Holocene sediments detected in the studied geophysical data of Porto Alto and Vila Franca de Xira–Lisbon faults imply minimum slip rates of 0.15–0.30 mm/year, three times larger than previously inferred for active faults in the Lower Tagus Valley and maximum estimates of average return periods of 2000–5000 years for M 6.5–7 co-seismic ruptures.     

Episodic Biogeochemical Variability in a Low-Flow Mediterranean Estuary

To investigate to what extent episodic physical processes regulate nutrient availability and phytoplankton assemblages of the Mahon estuary (Minorca Island), we carried out an intensive field study during 2010–2011. During the study period, environmental conditions spanned from intense stratification to a continuous mixing and from lack of riverine inflow to intense runoff. Our data reveals a sequence of biogeochemical states of the estuary that result from the interplay between runoff, other non-periodic forcings (winds, sea level oscillations), and variations in water renewal. Seasonal runoff was revealed as a major driver of winter circulation and of the influx of inorganic nutrients, in particular nitrate. However, because of the combination between runoff and flushing time, the effects of floodwater events on phytoplankton are short-lived (days). Conversely, during summer, when freshwater influx declines, water renewal relies on pulsed atmospheric forcing that may be of local or remote origin. As depicted from the low nitrate concentrations (<1 μM) and enhanced ammonium (>1 μM), this change in circulation and external loads carries nutrient assimilation within the estuary head and forces the use of remnant nutrients through regenerating pathways to sustain an enhanced phytoplankton biomass at the lower estuary. Episodic variability represented between 52 and 65% of the annual chlorophyll variance. Despite the fact that episodic pulses represented intense departures from base biogeochemical state of the estuary, at time scale larger than weeks, the phytoplankton community composition and dynamics was largely regulated by the integrated effect of these episodes and other environmental drivers associated with seasonality rather than by individual storm events only. Our results suggest that even though the system presents good recovery capacity to individual storm episodes, it may be more vulnerable to increased nutrient fluxes during summer, as well as to changes in episode timing and frequency.     

Phytoplankton as an Indicator of Improving Water Quality in the Golden Horn Estuary

The variation in phytoplankton community as a response to improving water quality has been studied in the severely polluted Golden Horn Estuary (GHE). Phytoplankton data collected monthly for 4 years and a detailed set of environmental parameters clearly showed the remarkable change in the GHE. The GHE ecosystem did not respond to numerous rehabilitation efforts to improve water quality, unless strict measures were taken to enhance water circulation. The opening of a bridge operating on large buoys and release of high amounts of fresh water from a dam acted as the turning point for the whole system. The weakening of light limitation and anoxia at upper regions is followed by consecutive blooms of different species/groups and resulted in super-saturated dissolved oxygen concentrations and a significant decrease in nutrient concentrations. When compared to the pre-remediation period, average total eukaryotic phytoplankton abundance increased 11-fold in the lower estuary, while the increase in the upper estuary was over 3 × 10⁴ in the post-remediation period. In addition, species richness continuously increased through the study period and community structure showed very strong variability. Since the estuarine ecosystem is controlled by precipitation in the last decade, the increase in anthropogenic/terrestrial inputs following heavy rainfall had adversely affected water quality and phytoplankton.     

Groundwater salinization in the Azores archipelago (Portugal)

Groundwater salinization in coastal regions causes severe constraints to water supply and economic losses to society worldwide. In the Azores archipelago, groundwater abstraction in wells drilled in coastal aquifers is very important for water supply, and quality problems have been reported. Therefore, a groundwater chemistry dataset from wells was compiled to study groundwater salinization in these aquifers. Waters are mainly of the Na–Cl type, presenting a slightly acidic to slightly alkaline character, with a pH between 5.63 and 8.50 (median 7.40). Electrical conductivity measurements range from 127 to 9,670 μS/cm (median 862), suggesting highly variable mineralization, with higher values observed on Santa Maria, São Miguel, Pico, Graciosa, and São Jorge islands. The major-ion composition reflects the contribution of seawater to the groundwater compositional evolution, which is essentially explained by seawater intrusion into wells. In many samples, exchange reactions of Na⁺ + K⁺ for Ca²⁺ + Mg²⁺ are associated with salinization. The seawater fraction in groundwater composition reaches a maximum of 22.5%. These results are extremely challenging to water managers in the Azores because failure to comply with national water quality regulations and with European Union groundwater directive requirements often occurs.     

Quantifying the Effect of Salinity Stratification on Phytoplankton Density Patterns in Estuaries

To quantify the effect of salinity stratification on phytoplankton density (denoted as P) patterns, experiments were conducted with an idealised model that couples physical and biological processes. Results show that the idealised model is capable of capturing the main features of observed P patterns in the Columbia River estuary during the spring season: during weak stratification, P is almost vertically uniform with values decreasing towards the estuary mouth, whereas during strong stratification, high values of P extend further seawards but are confined to the upper layer. Sensitivity studies reveal that the strong vertical gradients of P can only occur if the intensity of turbulence (measured by depth-averaged values of vertical eddy viscosity and eddy diffusivity) is weak. The advection of P by subtidal currents is important in obtaining a smaller along-estuary gradient of P during weak stratification and in obtaining a smaller horizontal gradient and a larger vertical gradient of P during strong stratification. Accounting for stratification controlled vertical distribution of vertical eddy viscosity and eddy diffusivity is necessary for obtaining realistic P patterns if stratification is strong, but not if stratification is weak. A higher osmotic stress, which leads to faster loss of phytoplankton in salt water, results in a larger along-estuary gradient of P if stratification is weak and in a larger vertical gradient of P if stratification is strong.     

The Influence of Coastal Nutrients on Phytoplankton Productivity in a Shallow Low Inflow Estuary,Drakes Estero,California (USA)

Seasonal wind-driven upwelling along the U.S. West Coast supplies large concentrations of nitrogen to surface waters that drives high primary production. However, the influence of coastal upwelled nutrients on phytoplankton productivity in adjacent small estuaries and bays is poorly understood. This study was conducted in Drakes Estero, California, a low inflow estuary located in the Point Reyes National Seashore and the site of an oyster mariculture facility that produces 40 % of the oysters harvested in California. Measurements of nutrients, chlorophyll a, phytoplankton functional groups, and phytoplankton carbon and nitrogen uptake were made between May 2010 and June 2011. A sea-to-land gradient in nutrient concentrations was observed with elevated nitrate at the coast and higher ammonium at the landward region. Larger phytoplankton cells (>5 μm diameter) were dominant within the outer and middle Estero where phytoplankton primary productivity was fueled by nitrate and f-ratios were >0.5; the greatest primary production rates were in the middle Estero. Primary production was lowest within the inner Estero, where smaller phytoplankton cells (<5 μm) were dominant, and nitrogen uptake was dominated by ammonium. Phytoplankton blooms occurred at the outer and middle Estero and were dominated by diatoms during the spring and dry-upwelling seasons but dinoflagellates during the fall. Small flagellated algae (>2 μm) were dominant at the inner Estero where no blooms occurred. These results indicate that coastal nitrate and phytoplankton are imported into Drakes Estero and lead to periods of high new production that can support the oyster mariculture; a likely scenario also for other small estuaries and bays.