The humin structure of mucilage aggregates in the Adriatic and Tyrrhenian seas: hypothesis about the reasonable causes of mucilage formation

Sixteen mucilages sampled in the Adriatic and Tyrrhenian seas during 1999–2001 were characterised using spectroscopic [Fourier transform infrared spectroscopy (FTIR); colorimetric], chromatographic [thin-layer chromatography (TLC)], and elemental analysis techniques. Most samples contained comparable fractions of organic and inorganic compounds, with the exception of a few samples where the inorganic fraction was greater than the organic fraction. Carbohydrates were important in the samples rich in organic matter, while carbonate and silica (quartz and biogenic silica) were the most important constituents of the inorganic fraction. Carbonate and silica were the only important constituents of the samples with a very low organic content.According to chemical analyses, mucilage aggregates show the typical structure of humin—the insoluble fraction of the humic substance. Classification of mucilage samples as humin-like compounds, together with a reexamination of the factors involved in the formation of organic aggregates in marine environment, has led to the formulation of a reasonable hypothesis for mucilage formation.     

The role of floating mucilage in the invasive spread of the benthic microalga Chrysophaeum taylorii

Chrysophaeum taylorii Lewis & Bryan (Pelagophyceae) is a mucilage‐producing benthic microalga that has recently begun to spread in the Mediterranean Sea, where a range expansion is occurring. This paper presents the results of three field experiments that aimed to increase the knowledge on mucilage provision mechanisms for this benthic microalga and to evaluate the importance of mucilage in its range expansion. By means of two correlative field experiments (several years of data were considered to encompass the variability of mucilage cover) we found that, on the sea bottom, mucilage cover does not depend on epilithic cell density and that both its cover and settling are affected by water flow. We also tested the hypothesis that cells embedded in floating mucilage fall on the underlying substratum, where their abundance depends on water flow. To this aim, in the field we manipulated the presence of floating mucilaginous aggregates in cages with different levels of exposure to winds. The abundance of C. taylorii cells on the substratum under cages with mucilage was compared with that of two control treatments: cages without mucilage and mucilage in still water, in the field and lab, respectively. The results suggested that mucilage can represent an excellent strategy for the species to disperse, as C. taylorii cells fall from the floating mucilage and, if the water flow is unimportant, settle on hard substrata just underneath the cage. This study enriches the portfolio of knowledge of the dispersal strategies of microalgae and contributes to the understanding of the spread of invasive species.     

Probing molecular-level transformations of dissolved organic matter: insights on photochemical degradation and protozoan modification of DOM from electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry

Molecular-level characterization of natural organic matter (NOM) has been elusive due to the inherent complexity of natural organic mixtures and to the fact that individual components are often polar and macromolecular. Electrospray ionization (ESI) is a “soft” ionization technique that ionizes polar compounds from aqueous solution prior to injection into a mass spectrometer. The highest resolution and mass accuracy of compounds within NOM have been achieved when ESI is combined with an ultrahigh-resolution mass spectrometer such as the Fourier transform ion cyclotron resonance mass spectrometer (FT-ICR MS). With this technique, individual molecules within a variety of natural organic mixtures can be detected and their elemental composition can be determined. At low mass-to-charge (m/z) ratio, the resolution is high enough to assign exact molecular formulas allowing specific components of these mixtures to be identified. In addition to molecular identification, we can now use ESI FT-ICR MS to examine molecular-level changes in different organic mixtures as a function of relevant geo-processes, such as microbial alterations and photochemistry. Here we present the results from the application of ESI FT-ICR MS to two geochemical questions: (1) the effect of photoirradiation on the molecular composition of fulvic acids and (2) the role of protozoan grazers in the modification of DOM in aquatic systems.     

A benthic mucilage event in North-Western Mediterranean Sea and its possible relationships with the summer 2003 European heatwave: short term effects on littoral rocky assemblages

In this contribution we document an anomalous mucilage growth which occurred in June 2003 along the rocky cliffs of the Portofino Promontory (Ligurian Sea, NW Mediterranean Sea), and we describe its dynamics and its negative effects on many benthic taxa. The zooxanthellate scleractinian Cladocora caespitosa underwent ‘bleaching’ and about 40% of biomass of the erect algae was detached by mucilage ‘lianas’ created and strengthened by bottom currents. The 2003 event differed from any other previously occurred in the northern Tyrrhenian Sea, in that the mucilage aggregates were formed by the free‐living form of the Phaeophyceae Acinetospora crinita (Harvey) Kornmann, a not usually dominant species in mucilage aggregates from the north Tyrrhenian Sea. The damage suffered by the benthic organisms living in this area was curtailed by a severe storm, occurred in July, which removed the mucilage to deeper depths, preventing irreversible damages. Only slow growing, perennant organisms, such as corallinales or scleractinians, were seriously affected, but a survey carried out 1 year later, in June 2004, allowed to appreciate a complete recovery of those organisms. This anomalous mucilage event occurred in coincidence of the 2003 European heatwave, and the anomalous temperature increase of seawater has to be regarded as the major contributing event that led to the mucilage outbreak.     

High molecular weight organic matter in seawater

The presence and nature of high molecular weight organic matter in seawater was critically reviewed and its biogeochemical cycle was discussed.Organic matter that passes through a filter of 0.5–1 μm pore size is called dissolved and that which does not pass through such a filter is defined as particulate. The size of colloidal particles ranges from 0.001 to 1 μm, and therefore, they are included in the dissolved fraction having high molecular weight.High molecular weight organic matter greater than 100,000 molecular weight was found in the seawater of Tokyo Bay. The values ranged from 0.1 to 1.5 mgC/l, and accounted for 8–45% of the total dissolved organic matter.Decomposition experiments on dissolved organic matter showed that macromolecular organic matter is refractory to bacterial attack. However, macromolecular organic materials tend to aggregate or adsorb on small particles to a sufficient size for precipitation. Organic aggregates thus formed sink to the bottom of the sea and bioelements included in them are removed from water column. High molecular weight organic materials are, therefore, considered to play an important role in transportation and distribution of matter in seawater.In order to elucidate the chemical and biological properties of macromolecular organic matter, concentration and isolation of this material are important, using methods such as adsorption on organic adsorbents or ultrafiltration.     

Distribution and sources of organic carbon, nitrogen and their isotopes in sediments of the subtropical Pearl River estuary and adjacent shelf, Southern China

The isotopic composition (δ¹³C and δ¹⁵N) and organic carbon (OC) and total nitrogen (TN, organic plus inorganic) content of 37 carbonate-free surficial sediments of the subtropical Pearl River estuary and the adjacent shelf of South China Sea (SCS) was determined. The δ¹³C values indicate that the sediment organic material is a mixture from two sources, terrestrial and marine. Several of the sediments have extremely low (< 4) OC / TN ratios, which could be due to low OC contents and/or to a significant fraction of the TN present as inorganic nitrogen adsorbed on clays. In general, the spatial patterns of OC, TN, δ¹³C and δ¹⁵N are similar. Values are low at the river mouth and on the western coast, suggesting proportionally greater accumulation of terrestrial particulate organic matter relative to marine phytodetritus, which is limited by low productivity in the turbid plume of the Pearl River. Algal-derived organic carbon (al-OC) content is estimated to be low (≤ 0.06%) at the river mouth and higher (up to 0.57%) on the adjacent inner shelf based on a mixing model of end members.     

High downward flux of mucilaginous aggregates in the Ligurian Sea during summer 2002: similarities with the mucilage phenomenon in the Adriatic Sea

The DYFAMED sediment trap station in the Ligurian Sea (NW Mediterranean) has been active since 1986 and today comprises the longest time‐series of downward particle flux in the Mediterranean Sea. As such, it provides valuable information on the interannual variability of the particle flux, and also documents possible recent changes in the NW Mediterranean pelagic ecosystems. We report an unprecedented episode of downward flux of mucilaginous material at the DYFAMED station during summer 2002 in association with singular hydrometeorological conditions. The rain of mucilaginous aggregates clogged a PPS5 sediment trap at 260 m depth and was also clearly detected at 1080 m depth. The possible factors governing the development and sinking of the mucilaginous material are discussed. A very sharp increase of sea surface temperature during June and the presence of freshened waters in the surface the following month resulted in a stronger than usual stratification of the upper water column throughout the summer season. We suggest that the steepness of the vertical density gradient was responsible for the unusual accumulation of mucous aggregates. Additionally, a diatom bloom took place during the nutrient‐depleted conditions typical of summer, a factor which may have contributed to feed the pycnocline with transparent exopolymer substances. A storm occurring in the beginning of August relaxed the stratification and promoted the deposition of the mucilaginous aggregates accumulated in the upper water column during the preceding months. Important similarities of ambient conditions preceding the apparition of mucilaginous material in our open‐sea site and those reported in the Adriatic Sea during major mucilage events, suggest that general climatic conditions, rather than local factors, drive the occurrence of major accumulations of mucilaginous material in the water column at both sub‐basins of the Mediterranean Sea. In this regard, the strength of the air temperature increase during the onset of the stratified season is proposed as a major controlling factor.     

Hydrocarbons in the Bay of Bengal and Central Indian Basin bottom sediments: indicators of geochemical processes in the lithosphere

A study on the bulk distributions and molecular structures of n-alkanes and polycyclic aromatic hydrocarbons (PAH) in organic matter of the sediments from the Bay of Bengal and the Eastern and Central Indian Basins was undertaken. The former two regions represent areas characterised by “normal” sedimentation while the third one mainly represents a region of “active tectonism”. Content of the hydrocarbons in the sediments of “normal” sedimentation ranges between 4.6 and 10.5 μg/g and aromatic hydrocarbons ranges between 0 and 0.38 μg/g. n-Alkanes in the sediments of the northern deep part of the Bay of Bengal consist mostly of long-chain structures (total C₂₅–C₃₃ up to 70%) with a high carbon preference index (CPI=3.01–3.43), indicating a large contribution of organic matter from terrigenous sources. The sediments from the Eastern Indian Basin have n-alkane distributions in which the long-chain components did not exceed 52.5% and the CPI was 1.7–1.90, indicating that the hydrocarbons are mostly derived from marine sources. Sharp increases of hydrocarbons are found in the vicinity of the tectonically active region of the Central Indian Basin, particularly in the sediments collected from the fracture zone. The total concentration of hydrocarbons increase to 170 μg/g and the aromatic hydrocarbons fraction to 156.3 μg/g. The proportion of short-chain n-alkanes increases up to 70%, CPI decreases to 0.76–1.12, and high concentrations of n-C₁₆ (16–40%) occur, all of which are absent in the other samples. The molecular content of PAH includes the unsubstituted individual structures: biphenyl, fluorene, pyrene, perylene, benzo(ghi)perylene, and the groups of homologues of naphthalene, benzofluorene, phenanthrene and chrysene. The association of the PAH and composition of paraffin hydrocarbons in the surficial sediments of deformation zone indicate that these are the resultant products of hydrothermal processes. It is, therefore, suggested that the association and composition of the hydrocarbons in sediments can be utilised as a paleoceanographic parameter to decipher the history of tectonism of an area.     

Temporal variations of dissolved and particulate Th at a coastal station of the northern Adriatic Sea

Water–particle interactions, particle behaviour and short-time scale variability were assessed at a coastal station adjacent to the Emilia Romagna Region (Adriatic Sea) using dissolved and particulate ²³⁴Th analyses. The water column was sampled six times between March and September 1997. Measurements showed that ²³⁴Th is actively scavenged by particles but the dissolved fraction is always prevalent. Changes in hydrological conditions affect to some degree thorium activities and residence times. Dissolved thorium inventories slowly increased from May to July, then decreased in August, and increased again in September. In July, the formation of a sharp pycnocline associated with low productivity led to high dissolved and very low particulate ²³⁴Th activities due to inefficient scavenging. The presence of mucilaginous aggregates, observed in both August and September, may have played a role in scavenging of thorium. In September at 16 m depth, the highest ²³⁴Th particulate activity of the study period was measured, probably due to the presence of mucilage. However, the thorium deficit was scarce, due to the small sinking velocity of these aggregates. Both steady-state and non-steady state models were used to calculate residence times for the whole water column and its topmost part (10 m) obtaining strictly comparable results. Residence times in the whole water column are small, ranging from 15 to 45 and from 0.5 to 24 d for dissolved and particulate thorium, respectively.     

Influence of winds and oceanographic conditions on the mucilage aggregation in the Northern Adriatic Sea in 2003–2006

Meteorological and oceanographic conditions in the Northern Adriatic Sea in a year notable for massive mucilage formation (2004) were compared with those in years where this phenomenon did not occur (2003, 2005 and 2006) to suggest possible links. The months preceding the mucilage event in 2004 were considered the ‘incubation period’ and were characterized by a strong freshet in May which increased the water column stability. Winter cooling and scarcity of freshwater inputs from the Po River triggered the dense water formation and intrusion in the northern basin. Weak southeasterly winds and an increase in surface seawater temperatures contributed to maintain and reinforce the water column stability, and at the same time an intense diatom spring bloom created the conditions for accumulation of organic matter. The interplay of climatological forcings and biological processes caused temporal variations of dissolved organic carbon (DOC) and particulate organic carbon (POC) in the basin, with POC playing an important role in the aggregation process, as suggested by its increase relative to DOC before massive mucilage formation. We therefore suggest that high POC/total particulate nitrogen ratios in the suspended particulate organic fraction, a steep increase of POC/Chlorphyll a, and the decreased DOC/POC ratios represent ‘early warning’ signals of the main processes that lead to mucilage events in the Northern Adriatic Sea.     

Stocks and dynamics of dissolved and particulate organic matter in the southern Ross Sea, Antarctica

Dissolved and particulate organic matter was measured during six cruises to the southern Ross Sea. The cruises were conducted during late austral winter to autumn from 1994 to 1997 and included coverage of various stages of the seasonal phytoplankton bloom. The data from the various years are compiled into a representative seasonal cycle in order to assess general patterns of dissolved organic matter (DOM) and particulate organic matter (POM) dynamics in the southern Ross Sea. Dissolved organic carbon (DOC) and particulate organic carbon (POC) were at background concentrations of approximately 42 and 3 μM C, respectively, during the late winter conditions in October. As the spring phytoplankton bloom progressed, organic matter increased, and by January DOC and POC reached as high as 30 and 107 μM C, respectively, in excess of initial wintertime conditions. Stocks and concentrations of DOC and POC returned to near background values by autumn (April). Approximately 90% of the accumulated organic matter was partitioned into POM, with modest net accumulation of DOM stocks despite large net organic matter production and the dominance of Phaeocystis antarctica. Changes in NO₃ concentration from wintertime values were used to calculate the equivalent biological drawdown of dissolved inorganic carbon (DIC_equiv). The fraction of DIC_equiv drawdown resulting in net DOC production was relatively constant (ca. 11%), despite large temporal and spatial variability in DIC_equiv drawdown. The C : N (molar ratio) of the seasonally produced DOM had a geometric mean of 6.2 and was nitrogen-rich compared to background DOM. The DOM stocks that accumulate in excess of deep refractory background stocks are often referred to as “semi-labile” DOM. The “semi-labile” pool in the Ross Sea turns over on timescales of about 6 months. As a result of the modest net DOM production and its lability, the role DOM plays in export to the deep sea is small in this region.     

Distributions and sources of bulk organic matter and aliphatic hydrocarbons in surface sediments of the Bohai Sea, China

Surface sediment samples from a matrix of fifty-five sites covering virtually the entire Bohai Sea (Bohai), China were analyzed for total organic carbon (TOC), total nitrogen (TN), n-alkanes, unresolved complex mixture (UCM), biomarkers and stable carbon isotopic composition (δ¹³C), and principal component analysis was performed for source identification of organic matter (OM). The distribution of organic carbon correlated well with sediment grain size with the finest sediments having the highest concentration, suggesting the influence of hydrodynamics on the accumulation of sedimentary organic matter (SOM). The corrected TOC/ON (organic nitrogen) ratios and δ¹³C indicated mixed marine and terrestrial sources of SOM. Results suggested that δ¹³C could be used as a potential indicator to observe the dispersion of Huanghe-derived sediments in Bohai. Total n-alkane concentrations varied over 10-fold from 0.39 to 4.94 μg g^− 1 (dry weight) with the maximum terrigenous/aquatic alkane ratio observed at the Huanghe River Estuary (HRE) due to more higher plant OM from riverine inputs. C₁₂–C₂₂ n-alkanes with even-to-odd predominance were observed in several central-eastern Bohai sites. The HRE and its adjacent area is the main sink for the Huanghe river-derived OC. The ubiquitous presence of UCM, biomarkers (hopanes and steranes) and PCA results indicated the presence of petroleum contamination in Bohai, mainly from offshore oil exploration, discharge of pollutants from rivers, shipping activities and atmospheric deposition.     

Dynamics of suprabenthos off the Ebro Delta (Catalan Sea: western Mediterranean): Spatial 13 and temporal patterns and relationships with environmental factors

Dynamics of suprabenthos (hyperbenthos) composition and biomass have been simultaneously analyzed at two sites (S1, S2) off the Ebro River Delta (western Mediterranean). The stations, separated by ca. 5 km, differed in terms of depth (S1, 47 m; S2, 61 m), distance to the river mouth (S2 south of S1 and farther from the mouth) and fishing activity (S1 is a fishing ground; S2 is in an area closed to fishing). Peracarids (gammaridean amphipods, mysids, and cumaceans) were dominant among suprabenthic taxa. Seasonality was the main explanation for changes in taxonomic composition, with two seasonal groups indicated by MDS analyses (late summer–autumn, August–September, and November 2003; early summer, June and July samples). Peracarids at both S1 and S2 showed a peak of abundance in early July, with the highest densities reaching 5400 individuals (100 m)⁻² at S2. There was a sharp decrease of density in late July (S1) and August (S2), then an increase in August (S1) and in September (S2), respectively. A secondary peak of abundance occurred in November (S1) and December (S2). There was, therefore, a similar picture in the dynamics of suprabenthic peracarids at both sites, though with a delay of 1 month at the deeper S2. This pattern coincided with changes in river discharge (specifically, a decrease of suprabenthos when influx was below 200 m³ s⁻¹ in the period June–September 2003), and with the formation of a thermal gradient (also in June–September 2003) between S1 and S2 associated with the 15 °C isotherm. In addition, the decrease of suprabenthos in late July–August also coincided with the massive occurrence of mucilaginous aggregates close to the bottom (at between 0 and 4 m above the bottom), in the usual habitat of suprabenthos. C/N ratios in sediments (an indicator of the degree of degradation of organic matter (OM)) increased during this peak abundance of mucilaginous aggregates. The impoverishment of sediments in total organic carbon (TOC) was parallel to the decline of suprabenthos in late July–August, which is consistent with negative or non-significant correlations (evidenced both by Spearman's r and multi-regression models) between suprabenthos densities and TOC. Zooplankton taxa (e.g., copepods, chaetognaths, and fish/crustacean larvae living in the entire water column) showed significant correlations with a number of environmental factors (basically temperature), in contrast to suprabenthos. In conclusion, suprabenthos abundance was influenced by a number of natural factors, both intra-annual (e.g., OM quality, river discharges) and inter-annual (e.g., accumulation of mucilaginous remains). Probably due to their swimming capability, suprabenthos were not influenced by trawling activity. Considering the high P/B exhibited by suprabenthic crustaceans in comparison to infauna, this compartment likely has an important role in regulating food webs in those communities submitted to high fishing impact.     

Transport and fate of Danube Delta terrestrial organic matter in the Northwest Black Sea mixing zone

Within the framework of the European project EROS 21, a biogeochemical study of particles transported from the Danube Delta to the Northwestern Black Sea whose carbon cycle is dominated by riverine inputs was carried out in spring off the Sulina branch of the Danube Delta. The distribution of particulate organic carbon (POC), chlorophyll a (Chl a), C/N, and δ¹³C evidenced an omnipresent contribution of terrestrial organic matter throughout the study area together with a dilution of these inputs by freshwater and marine organisms. Four lipid series, n-alkanoic acids, n-alkanes, n-alkanols, and sterols were analyzed by gas chromatography and gas chromatography/mass spectrometry. Several signature compounds were selected to delineate dispersion of terrestrial organic carbon: (1) long-chain n-alkanoic acids in the range C₂₄–C₃₄, long-chain n-alkanes in the range C₂₅–C₃₅, long-chain n-alkanols in the range C₂₂–C₃₀, 24-ethylcholesta-5,22-dien-3β-ol (29Δ^5,22) and 24-ethylcholesterol (29Δ⁵) for vascular plant-derived material and (2) coprostanol (27Δ^0,5β) for faecal contamination associated with sewage effluents. A marked decrease was observed between the concentrations of different vascular plant markers characterizing the two end members: riverine at salinity 0.3 and marine at salinity 15.5. The decrease observed for marine/riverine end members (expressed as a function of organic carbon) varied in a large range, from 4% for n-alkanes to 18.6%, 20.4% and 24% for n-fatty acids, n-alkanols and sterols, respectively. These values reflect a combination of various processes: size-selective particle sedimentation, resuspension of different particle pools of different sizes and ages, and/or selective biological utilization. The multi-marker approach also suggested the liberation in the mixing zone of terrestrial moieties, tightly trapped in macromolecular structures of the riverine material. The greatest decrease for marine/riverine end members was observed for coprostanol (0.9%), underlining the efficiency of the mixing zone as a sink for sewage-derived carbon.     

Vertical Patterns of Suspended Matter Characteristics Along a Coastal-basin Transect in the Western Baltic Sea

Suspended particulate matter samples were collected from the water column, the bottom nepheloid layer and the ‘ fluffy layer ’ from four stations along a coastal-basin transect in the Pomeranian Bight, western Baltic Sea. Sampling was performed nine times between October 1996 and December 1998 for various analyses, including electron probe x-ray micro analysis for detailed mineralogical investigations.Specific vertical patterns of clay mineral distributions were found. Suspended particulate matter (SPM) in the bottom nepheloid layer and the ‘ fluffy layer ’ overlying sediments was enriched in organic carbon and hydrated three layer clay minerals, whereas the non-aggregated SPM was dominated by quartz and biogenic opal. It appears that separation effects operate during aggregation of mineral particles and organic matter in repeated cycles of resuspension and settling. No clear seasonal variations in the composition of the SPM were found, in spite of high spatial and temporal variability of biological and physical variables. The results suggest that preferential incorporation, possibly aided by microbiological colonization, of hydrated three layer silicates into the organic flocs is a process that occurs under a wide range of conditions. Because aggregates sink faster than individual particles, aggregate formation led to a relative enrichment of illite and smectite in the near-bottom layers. Considering the affinity of organic contaminants and heavy metals to organic matter, the selective removal of aggregated organic matter and hydrated three-layer clay minerals from the water column and enhanced transport in the near-bottom fluffy layer may be a natural cleansing mechanism operating in the shallow waters of the bight.     

The role of reduced sulfur species in the coalescence of polysaccharides in the Adriatic Sea

Massive mucilage events occur in the Northern Adriatic Sea presumably by cytoplasmic excretions from deteriorated diatoms. During three such events in the summer of 1991, 1997 and 1998 the presence of reduced sulfur species (RSS) was determined in samples of macroaggregate using electrochemical methods (in-phase alternating current (AC) and linear sweep voltammetry). The detected levels of sulfur, expressed as equivalent to sulfide concentrations, were about 200 nM. In the same mucilage samples, concentrations of organic matter were determined in the range from 60 to 600 mg/l of total organic carbon (TOC). The physico-chemical properties of organic matter in the macroaggregates correspond to those of polysaccharides of very high molecular mass. Scanning confocal laser microscopy (SCLM) and fluorescent molecular probes for sugars (the lectins concanvaline A (Con-A)) showed the transformation of polysaccharide polymer structure resulting in the formation of very stable filaments and layers after the treatment of mucilage samples with sodium sulfide. Commercial polysaccharides of bacterial and algal origin (xanthan, carrageenans types I and II, dextran-T-500) have been used to simulate macroaggregate formation under laboratory conditions after treatment with sodium sulfide. Raman spectroscopy indicated that for all model polysaccharides used, sulfide interaction occurred, as evidenced by visible change of the O–H stretching region in the vibration spectra of the water molecules.Our data suggest that the aggregated polysaccharides from the Adriatic Sea are: (1) structurally affected by addition of sulfide as was the case for most of the model polysaccharides, and (2) the stabilizing effect of sulfide on the aggregated polysaccharides is due to the formation of sulfur-organic compounds.     

Sea ice–ocean coupling using a rescaled vertical coordinate z

Realistic representation of sea ice in ocean models involves the use of a non-linear free-surface, a real freshwater flux and observance of requisite conservation laws. We show here that these properties can be achieved in practice through use of a rescaled vertical coordinate “z^*” in z-coordinate models that allows one to follow undulations in the free-surface under sea ice loading. In particular, the adoption of “z^*” avoids the difficult issue of vanishing levels under thick ice.Details of the implementation within MITgcm are provided. A high resolution global ocean sea ice simulation illustrates the robustness of the z^* formulation and reveals a source of oceanic variability associated with sea ice dynamics and ice-loading effects. The use of the z^* coordinate allows one to achieve perfect conservation of fresh water, heat and salt, as shown in extended integration of coupled ocean sea ice atmospheric model.     

Amphipoda assemblages in a disturbed area (Alicante,Spain, Western Mediterranean)

The distribution and composition of Amphipoda assemblages were analysed off the coasts of Alicante (Spain, Western Mediterranean), a disturbed area affected by several co‐occurring anthropogenic impacts. Although differences among sampled stations were mainly related to natural parameters, anthropogenic activities were linked with changes in amphipod assemblages. Expansion of the Port of Alicante, a sewage outfall and a high salinity brine discharge could be causing the disappearance of amphipods at stations closer to these disturbances. However, the completion of port enlargement works and mitigatory dilution of the brine discharge has led to the recovery of the amphipod assemblage. Among the natural parameters, depth determines the distribution of some of the species. While Siphonoecetes sabatieri was abundant at shallow stations, Ampelisca spp., Photis longipes, Pseudolirius kroyeri, Apherusa chiereghinii and Phtisica marina were more abundant at deeper stations. Grain size and percentage of organic matter also influenced amphipod distribution, resulting in changes in species composition and in the relative percentages of different trophic groups. Species such as Ampelisca brevicornis, Perioculodes longimanus, Urothoe hesperiae and Urothoe elegans were more abundant at stations with a high content of fine sand. Carnivorous species, mainly of the Oedicerotidae family, were more abundant at those stations with a low organic matter content, while detritivorous species were more abundant at stations with a higher mud content. Among 62 identified species, three were reported for the first time from the Spanish Mediterranean coast, two species were recorded for the second time and a new species of Siphonoecetes was found, Siphonoecetes (Centraloecetes) bulborostrum. These results confirm the need for further data on amphipods from the Mediterranean Spanish coast.     

Seasonal variations in dissolved organic carbon concentrations and characteristics in a shallow coastal bay

Dissolved organic matter (DOM) composition and dynamics in temperate shallow coastal bays are not well described although these bays may be important as local sources of organic carbon to ocean waters and are often sites of economically-important fisheries and aquaculture. In this study surface water samples were collected on a monthly to bi-monthly basis over two years from a mid-Atlantic coastal bay (Chincoteague Bay, Virginia and Maryland, USA). Dissolved organic carbon (DOC) concentrations and light absorbance characteristics were measured on sterile-filtered water, and high-molecular weight (> 1 kDa) dissolved OM (DOM) was isolated to determine stable isotope composition and molecular-level characteristics. Our time series encompassed both a drought year (2002) and a year of above-average rainfall (2003). During the dry year, one of our sites developed a very intense bloom of the brown tide organism Aureococcus anophagefferens while during the wet year there were brown tide bloom events at both of our sampling sites. During early spring of the wet year, there were higher concentrations of > 1 kDa DOC; this fraction represented a larger proportion of overall DOC and appeared considerably more allochthonous. Based upon colored dissolved organic matter (CDOM) and high-molecular weight DOM analyses, the development of extensive phytoplankton blooms during our sampling period significantly altered the quality of the DOM. Throughout both years Chincoteague Bay had high DOC concentrations relative to values reported for the coastal ocean. This observation, in conjunction with the observed effects of phytoplankton blooms on DOM composition, indicates that Chincoteague Bay may be a significant local source of “recently-fixed” organic carbon to shelf waters. Estimating inputs of DOC from Chincoteague Bay to the Mid-Atlantic Bight suggests that shallow productive bays should be considered in studies of organic carbon on continental shelves.     

Particulate barium fluxes on the continental margin: a study from the Alboran Sea (Western Mediterranean)

Particulate biogenic barium (bio-Ba) fluxes obtained from three instrumented arrays moored in the Alboran Sea, the westernmost basin in the Mediterranean Sea, are presented in this study. The mooring lines were deployed over almost 1 year, from July 1997 to May 1998, and were equipped with sediment traps at 500–700 m depth, 1000–1200 m depth and 30 m above the seafloor (1000–2200 m). The results obtained support the growing body of evidence that the relationship between particulate bio-Ba and Corg throughout the water column in margin systems is clearly different from this relation in the open ocean. In the Alboran Sea, the annual averaged bio-Ba fluxes range from 0.39 to 1.07 μmol m⁻² day⁻¹, with mean concentrations of 1.31–1.69 μmol g⁻¹ and bio-Ba/Corg ratios lower than in the open ocean. The low bio-Ba values obtained also indicate that calculating bio-Ba is extremely sensitive to the detrital Ba/Al ratio of each sample. The lithogenic Ba fraction in the Alboran Sea continental margin area contributes between 24% and 85% of the total Ba. Increased bio-Ba export efficiency was observed after periods of high primary productivity and suggests that the processes limiting the bio-Ba formation in the study area relate to settling dynamics of organic matter aggregates. Furthermore, the ballasting effect of the abundant lithogenic and carbonate particles may limit decomposition of organic matter aggregates and enhance the transfer of particles rich in Corg and relatively poor in bio-Ba to the deep seafloor. Lateral input of freshly sedimented biogenic material, including particulate bio-Ba, has been observed on the lower continental slope in the western Alboran Sea. These observations emphasize that the use of the bio-Ba as a proxy of export productivity from the surface ocean must be used cautiously in highly dynamic environments such as those in the Alboran Sea.