Eutrophication and management initiatives for the control of nutrient inputs to Rhode Island coastal lagoons

An assessment of developing eutrophic conditions in small temperate lagoons along the coast of Rhode Island suggests that in such shallow, macrophyte based systems the response to nutrient enrichment differs from that described for plankton based systems. The nitrogen loadings per unit area of the salt ponds are 240–770 mmol N per m² per year. Instead of the high nutrient concentrations, increased phytoplankton biomass and turbidity, leading to eventual loss of benthic macrophytes described for such systems as the Chesapeake, Patuxent and Appalachicola Bay, nutrient enrichment of the Rhode Island lagoons has led to increased growth of marine macroalgae. The increased macroalgal growth appears to alter the benthic habitat and a shift from a grazing to detrital food chain appears to be impacting important shellfisheries. As more extensive areas of organic sediments develop, geochemical cycling changes, resulting in higher rates of nitrogen remineralization and accelerated eutrophication. The major sources of nitrogen inputs to the salt ponds have been identified and a series of management initiatives have been designed to limit inputs from present and potential development within the watersheds of the lagoons.     

Survival of F-RNA coliphages and three bacterial indicators during wastewater chlorination and transport in estuarine waters

Three bacterial water quality indicators,Clostridium perfringens, enterococci, and fecal coliforms, were compared to F-RNA coliphages for their survival during chlorination at several municipal wastewater treatment plants in Rhode Island and seasonally during transport in a section of the Narragansett Bay estuary. F-RNA coliphages were used as the best available indicator for the survival of Noroviruses (formerly Norwalk-like virus), the most frequently identified agent for the most prevalent waterborne disease (an acute but benign gastroenteritis), which has yet to be propagated in tissue culture and for which there is no lower animal model. Inactivation of the enterococci and fecal coliforms during wastewater chlorination was much greater than that of the F-RNA coliphages whose inactivation was essentially the same as that of C.perfringens. Survival of the F-RNA coliphages andC. perfringens during winter transport down Narragansett Bay were comparable to each other and greater than that for the enterococci or fecal coliforms. During the summer,C. perfringens survived longer than the other three indicators, possibly because the virus-like (F-RNA coliphages) and the two vegetative bacterial indicators were more susceptible than theC. perfringens spores to the lethal effects of sunlight and elevated water temperatures during the summer. Based on these findings, F-RNA coliphages seems to be a reliable indicator of viral contamination and die-off in estuarine waters.     

Benthic nutrient remineralization in a coastal lagoon ecosystem

In situ measurements of the exchange of ammonia, nitrate plus nitrite, phosphate, and dissolved organic phosphorus between sediments and the overlying water column were made in a shallow coastal lagoon on the ocean coast of Rhode Island, U.S.A. The release of ammonia from mud sediments in the dark (20–440 μmol per m² per h) averaged ten times higher than from a sandy tidal flat (0–60 μmol per m² per h), and while mud sediments also released nitrate and phosphate, sandy sediments took up these nutrients. Fluxes of nutrients from mud sediments, but not from sandy areas, markedly increased with temperature. Ammonia release rates for mud sediments in the light (0–350 μmol per m² per h) were lower than those in the dark and it is estimated that some 25% of the ammonia released to the water column on an annual basis may be intercepted by the benthic microfloral community. Estimates of the annual net exchange of nutrients across the sediment-water interface, weighted by sediment type for the lagoon as a whole, showed a release of 450 mmol per m² of ammonia, 5 mmol per m² of phosphate, 5 mmol per m² of dissolved organic phosphorus, and an uptake of 80 mmol per m² of nitrate. Although rates of ammonia and nitrate exchange were comparable to those described for the deeper heterotrophic bottom communities of nearby Narragansett Bay, rates of benthic phosphate release were significantly lower. On an annual basis the Bay benthos released approximately 20 times more inorganic phosphate per unit area than did the lagoon benthos. As a result., the N/P ratio for the flux from the sediments was 74∶1 in the lagoon, compared with 16∶1 in “average” marine plankton and 8∶1 for the benthic flux from Narragansett Bay. The lack of remineralized phosphate in the lagoon, is reflected in water, column phosphate concentrations (always <1 μm) and water column N/P ratios (annual N/P=27) and suggests that the lagoon may show phosphate limitation rather than the nitrogen limitation commonly associated with marine systems.     

Denitrification and N2O production in near-shore marine sediments

Methods were developed for determining rates of denitrification in coastal marine sediments by measuring the production of N₂ from undisturbed cores incubated in gas-tight chambers. Denitrification rates at summer temperatures (23°C) in sediment cores from Narragansett Bay, Rhode Island, were about 50μmol N₂m^?2 hr^?1. This nitrogen flux is equal to approximately one-half of the NH⁺₄flux from the sediments at this temperature and is of the magnitude necessary to account for the anomalously low N/P and anomalously high O/N ratios often reported for benthic nutrient fluxes. The loss of fixed nitrogen as N₂ during the benthic remineralization of organic matter, coupled with the importance of benthic remineralization processes in shallow coastal waters may help to explain why the availability of fixed nitrogen is a major factor limiting primary production in these areas. Narragansett Bay sediments are also a source of N₂O, but the amount of nitrogen involved was only about 0.2 μmol m^?2 hr^?1 at 23°C.     

Experimental nutrient enrichment causes complex changes in seagrass, microalgae, and macroalgae community structure in Florida Bay

We examined the spatial extent of nitrogen (N) and phosphorus (P) limitation of each of the major benthic primary producer groups in Florida Bay (seagrass, epiphytes, macroalgae, and benthic microalgae) and characterized the shifts in primary producer community composition following nutrient enrichment. We established 24 permanent 0.25-m² study plots at each of six sites across. Florida Bay and added N and P to the sediments in a factorial design for 18 mo. Tissue nutrient content of the turtlegrassThalassia testudinum revealed a spatial pattern in P limitation, from severe limitation in the eastern bay (N:P>96:1), moderate limitation in two intermediate sites (approximately 63:1), and balanced with N availability in the western bay (approximately 31:1). P addition increasedT. testudinum cover by 50–75% and short-shoot productivity by up to 100%, but only at the severely P-limited sites. At sites with an ambient N:P ratio suggesting moderate P limitation, few seagrass responses to nutrients occurred. Where ambientT. testudinum tissue N:P ratios indicated N and P availability was balanced, seagrass was not affected by nutrient addition but was strongly influenced by disturbance (currents, erosion). Macroalgal and epiphytic and benthic microalgal biomass were variable between sites and treatments. In general, there was no algal overgrowth of the seagrass in enriched conditions, possibly due to the strength of seasonal influences on algal biomass or regulation by grazers., N addition had little effect on any benthic primary producers throughout the bay. The Florida Bay benthic primary producer community was P limited, but P-induced alterations of community structure were not uniform among primary producers or across Florida Bay and did not always agree with expected patterns of nutrient limitation based on stoichiometric predictions from field assays ofT. testudinum tissue, N:P ratios.     

Using winter flounder growth rates to assess habitat quality across an anthropogenic gradient in Narragansett Bay, Rhode Island

We used growth rates of juvenile winter flounderPseudopleuronectes americanus to assess anthropogenic influence on habitat quality at three sites in Narragansett Bay, Rhode Island. The upper bay site, Gaspee Point, had the highest population density and concentration of total nitrogen; human inputs decreased down bay. Growth rates of individually marked fish were measured in three 15-d experiments from June 8 to July 6, 1998 in 1-m² cages placed at upper, middle, and lower bay sites. Water temperature, salinity, dissolved oxygen (DO), and benthic food were also measured. Stable isotopes of nitrogen and carbon were measured in experimental fish as possible indicators of nutrient enrichment and to identify organic carbon sources. Growth rates were 0.22–0.60 mm d⁻¹, with the highest average at the mid-bay site. Growth was initially fastest at Gaspee Point, but dropped off as DO concentrations fell. Step-wise multiple regression indicated that location (upper, middle, or lower bay) explained most of the variability in fish growth (40%). Coefficients of other significant variables indicated that fish grew faster at lower salinities, smaller sizes, and with decreased time that DO was below 2.3 mg l⁻¹. Benthic prey varied among sites and there was significantly less food and fewer species at Gaspee Point.Polydora cornuta was a favored food at all sites and was found in over half the stomachs. Values of δ¹⁵N in fish and sediments did not reflect differences in total nitrogen concentrations recorded near the sites. We suggest that anthropogenic influences, such as nutrients and sewage, affected habitat quality by reducing DO, which lowered fish growth rates.     

Identification of important primary producers in a Chesapeake Bay tidal creek system using stable isotopes of carbon and sulfur

The use of multiple stable isotopes in the study of trophic relationships in temperate estuaries has usually been limited to euhaline systems, in which phytoplankton, benthic microalgae, andSpartina alterniflora are major sources of organic matter for consumers. Within large estuaries such as Chesapeake Bay, however, many species of consumers are found in the upper mesohaline to oligohaline portions. These lower salinity wetlands have a greater abundance of macrophytes that use C3 photosynthesis to fix carbon, in addition toS. alterniflora, which fixes carbon via the C4 photosynthetic pathway. In a broad survey of the biota and sediments of a brackish tidal creek tributary to Chesapeake Bay, combined δ¹³C and δ³⁴S measurements disclosed a balanced contribution to secondary production from phytoplankton, C3 macrophytes,Spartina sp., and benthic microalgae. Surface sediment δ¹³C suggested that the organic matter from C3 plants was derived both from allochthonous sources (terrestrial runoff) and from autochthonous production (marsh macrophytes). Unlike most estuarine systems studied to date, which are dominated by algae (phytoplankton and benthic microalgae) and C4 macrophytes, C3 plants are of greater importance in the diets of consumers in this low-salinity creek system.     

Influence of Organic Enrichment and <Emphasis Type="Italic">Spisula subtruncata</Emphasis> (da Costa, 1778) on Oxygen and Nutrient Fluxes in Fine Sand Sediments

The role of labile organic material and macrofaunal activity in benthic respiration and nutrient regeneration have been tested in sublittoral fine sand sediments from the Gulf of Valencia (northwestern Mediterranean Sea). Three experimental setups were made using benthic chambers. One experiment was performed in-situ through the annual cycle in a well-sorted fine sand community. The remaining experiments were carried out with mesocosms under laboratory conditions: one with different concentrations of organic enrichment (mussel meat and concentrated diatoms culture), and the other adding two different densities of the endofaunal bivalve Spisula subtruncata. Biochemical variables in surface sediment and changes in oxygen consumption and nutrient fluxes throughout incubation period were studied in each experiment. In the in situ incubations, dissolved oxygen (DO) fluxes showed a strong correlation with sedimentary biopolymeric fraction of organic carbon. Organic enrichment in the laboratory experiments was responsible for increased benthic respiration. However, sediment response (expressed as DO uptake and dissolved inorganic nitrogen—DIN—release) between oligotrophic and eutrophic conditions was more intense than between eutrophic and hypertrophic conditions. S. subtruncata abundances close to 400 and 850 ind m^?2 also intensified benthic metabolism. DO uptake and DIN production in mesocosms with added fauna were between 60 and 75 % and 65–100 % higher than in the control treatment respectively. The results of these three experiments suggest that the macrobenthic community may increase the benthic respiration by roughly a factor of two in these bottoms, where S. subtruncata is one of the dominant species. Both organic enrichment and macrobenthic community in general, and S. subtruncata in particular, did not seem to have a relevant role in P and Si cycles in these sediments.     

Rate of tube building and sediment particle size selection during tube construction by the tanaid crustacean,Leptochelia dubia

In estuaries, organic coatings play an important role in the aggregation of mineral particles. Particles acquire adhesive surfaces through the activities of bacteria and microalgae in the sediment and water column. Eventually, they may become incorporated into larger aggregates and structures, such as tubes, constructed by infaunal benthic animals. Where these structures are large enough, and the adhesive bonds between particles strong enough, individual particles may remain in place at bed shear stresses otherwise strong enough to cause sediment transport. This study examined the aggregation of particles during tube building by the ubiquitous tanaid crustaceanLeptochelia dubia. Particle size selection and rates of tube building were determined as functions of animal size, temperature, and the presence or absence of bacteria and microalgae. These data were used to model seasonal patterns of sediment binding by a population ofL. dubia in Yaquina Bay, Oregon, taking into account seasonal changes in sizes and abundance of animals. Rates of tube building (mass of sediment per day) increased with animal size, but temperature had no effect. The model indicated that the field population ofL. dubia bound sediment into tubes at a gross rate of 350 g m^?2 d^?1, averaged over a 2-yr period. Seasonally, gross rates of tube building were predicted to range from 70 g m^?2 d^?1 (during late winter-early spring) to 600 g m^?2 d^?1 (during autumn). When constructing tubes from sterile sediments, small animals selected silt-sized particles while large animals discriminated against these particles. The presence of microbes in sediments tended to reduce particle selectivity.     

Diverse Dietary Responses by Saltmarsh Consumers to Chronic Nutrient Enrichment

We examined the effect of whole-ecosystem nutrient enrichment on herbivory in saltmarsh creek-wall habitats in the Plum Island Estuary (Massachusetts, USA). Located between the macrophyte-dominated high marsh and adjoining mudflats, creek walls are steep vertical habitats vegetated with productive filamentous algae and associated epiphytes. Annual nitrate and phosphate loading rates were increased approximately ×10–15 in creeks mimicking short-term (2-month) and chronic (6-year) eutrophication. We assessed the diets of epifaunal invertebrates (three gastropods and one amphipod species) that potentially graze on benthic algae using natural isotope abundance data and per capita grazing rate measurements derived from ¹³C prelabeled algae. Substantial dietary contributions from benthic algae were observed in all consumers even though previous research has indicated most rely on Spartina detritus as the principal food resource. The amphipod Orchestia grillus and the snail Melampus bidentatus grazed benthic algae in excess of 500 μg algal C g C^?1 h^?1, whereas the snail Nassarius obsoletus and hydrobiid snails grazed at lower rates. Few dietary changes were detected with short-term enrichment. Algal grazing rates of N. obsoletus and M. bidentatus increased with chronic enrichment probably as a functional response to increased algal productivity. O. grillus grazed at a high rate and parasitic infection did not affect its consumption of benthic algae. The abundance and frequency of occurrence of O. grillus on creek-wall habitats increased with chronic nutrient enrichment suggesting amphipods contribute to top–down control on benthic algae and slow algal growth as nutrient enrichment occurs.     

Prevalence of pathogenic microorganisms and their correlation with the abundance of indicator organisms in riverbed sediments

The present study investigated the prevalence of pathogenic organisms (Salmonella spp, Vibrio cholerae, and Shigella spp) and their correlation to the abundance of faecal indicator organisms in water and riverbed sediments in the Apies River, South Africa. In all, 558 water and sediment samples were collected from 10 sites in the river (May 2013–February 2014) and analysed through culture and molecular (real-time PCR) techniques. Concentrations of faecal indicator organisms in sediments reached 1.39 × 10⁵ (±standard deviation) CFU/100 mL. All three pathogens were detected in water and sediments. Pathogens were mostly detected in sediments at sites influenced either by wastewater treatment works or by informal settlements. During the wet and dry seasons (water column), a strong positive correlation was observed between E. coli and all pathogens; C. perfringens only correlated with V. cholerae. Within sediments, strong positive correlations were only observed between E. coli and Salmonella spp, E. coli and V. cholerae (dry season); E. coli and V. cholerae and E. coli and Shigella spp (wet season). No correlation was observed between sediments C. perfringens counts and all the pathogens. Thus, sediments of the Apies River harbour pathogenic organisms. Correlation between E. coli and pathogenic organisms in the sediments suggests that E. coli could also be an indicator of pathogens’ presence. However, the lack of a correlation between E. coli and some pathogens in sediments and between C. perfringens and all the pathogens highlights the need to investigate for more indicators of pathogens’ presence in this complex matrix.     

The response of fishes to submerged aquatic vegetation complexity in two ecoregions of the mid-Atlantic bight: Buzzards Bay and Chesapeake Bay

Estuarine seagrass ecosystems provide important habitat for fish and invertebrates and changes in these systems may alter their ability to support fish. The response of fish assemblages to alteration of eelgrass (Zostera marina) ecosystems in two ecoregions of the Mid-Atlantic Bight (Buzzards Bay and Chesapeake Bay) was evaluated by sampling historical eelgrass sites that currently span a broad range of stress and habitat quality. In two widely separated ecoregions with very different fish faunas, degradation and loss of submerged aquatic vegetation (SAV) habitat has lead to declines in fish standing stock and species richness. The abundance, biomass, and species richness of the fish assemblage were significantly higher at sites that have high levels of eelgrass habitat complexity (biomass >100 wet g m^?2; density <100 shotts m^?2) compared to sites that have reduced eelgrass (biomass <100 wet g m^?2; density <100 shoots m^?2) or that have completely lost eelgrass. Abundance, biomass, and species richness at reduced eelgrass complexity sites also were more variable than at high eelgrass complexity habitats. Low SAV complexity sites had higher proportions of pelagic species that are not dependent on benthic habitat structure for feeding or refuge. Most species had greater abundance and were found more frequently at sites that have eelgrass. The replacement of SAV habitats by benthic macroalgae, which occurred in Buzzards Bay but not Chesapeake Bay, did not provide an equivalent habitat to seagrass. Nutrient enrichment-related degradation of eelgrass habitat has diminished the overall capacity of estuaries to support fish populations.     

Nitrogen Stable Isotopes of Macrophytes Assess Stormwater Nitrogen Inputs to an Urbanized Estuary

The ¹⁵N composition of seagrass and benthic macroalgae from shallow waters of Sarasota Bay was measured to determine if stable N isotopes can be used to trace stormwater N into macrophyte production within an urbanized estuary. Results show isotopically enriched macroalgae at the landward stations near creeks and bayous in the central Bay and in the southern portion of the Bay. A known sewage outfall at Whitaker Bayou resulted in δ ¹⁵NO₃ values from 0 to +9‰. Isotopically enriched NH₄ values in Phillippi Creek (+10 to +17‰) were similar to the stormwater ¹⁵NH₄ values from the watershed (+7 to +18‰). Enriched N sources supported a significant portion of macroalgae N demands in the southern reaches of the Bay while isotopically depleted N sources (i.e., atmospheric deposition and/or fertilizers) appear to be more important for macroalgae in the northern portion of the Bay. Macroalgae were typically more enriched than seagrass and appear to be better indicators of anthropogenic loadings near creeks and bayous that receive large volumes of stormwater and other anthropogenic N sources. Historically, studies have used enriched ¹⁵N in macrophytes to infer wastewater influences. This study shows that stormwater N inputs need to be considered in nitrogen budgets for aquatic systems that show anthropogenic ¹⁵N enrichment.     

Biomass and production of benthic microalgal communities in estuarine habitats

Accurate measures of intertidal benthic microalgal standing stock (biomass) and productivity are needed to quantify their potential contribution to food webs. Oxygen microelectrode techniques, used in this study, provide realistic measures of intertidal benthic microalgal production. By dividing a salt-marsh estuary into habitat types, based on sediment and sunlight characteristics, we have developed a simple way of describing benthic microalgal communities. The purpose of this study was to measure and compare benthic microalgal biomass and production in five different estuarine habitats over an 18-mo period to document the relative contributions of benthic microalgal productivity in the different habitat types. Samples were collected bimonthly from April 1990 to October 1991. Over the 18-mo period, tall Spartina zone habitats had the highest (101.5 mg chlorophyll a (Chl a) m^?2±6.9 SE) and shallow subtidal habitats the lowest (60.4±8.9 SE) microalgal biomass. There was a unimodal peak in biomass during the late winter-early spring period. The concentrations of photopigments (Chl a and total pheopigments) in the 0–5 mm of sediments were highly correlated (r²=0.73 and 0.88, respectively) with photopigment concentrations in the 5–10 mm depth interval. Biomass specific production (μmol O₂ mg Chl a ^?1 h^?1) was highest in intertidal mudflat habitats (206.3±11.2 SE) and lowest in shallow subtidal habitats (104.3±11.1 SE). Regressions of maximum production (production at saturating irradiances) vs. biomass (Chl a) in the upper 2 mm of sediment by habitat type gave some of the highest correlations ever reported for benthic microalgal communities (r² values ranged from 0.43 to 0.73). The habitat approach and oxygen microelectrode techniques provide a useful, realistic ranged from 0.43 to 0.73). The habitat approach and oxygen microelectrode techniques provide a useful, realistic method for understanding the biomass and production dynamics of estuarine benthic microalgal communities.     

The geochemistry of iodine in near-shore carbonate sediments

The total concentration of I is commonly higher in surface terrigenous sediments relative to more deeply buried material. Diagenetic release, loss of dissolved I during burial, and back-reaction of I with the solid phase under oxidizing conditions contribute to I enrichment near the sediment/water interface. In order to differentiate between scavenging of dissolved I by organic matter or metal oxides, the diagenetic behavior of I was examined in the Fe-poor carbonate sediments of Florida Bay, Florida. In this environment I is released by organic decomposition at I/C ratios similar to terrigenous environments (~0.5 mmole/mole), transported to the oxygenated sediment/water interface, and lost to the overlying water. The dissolved I flux from these deposits is roughly equivalent to the production rate within the deposit (~10 μmole/m²/day at 28°C). No significant enrichment is observed in the solid phase.Dissolved iodine transport within the sediment column may also be controlled by non-steady-state lateral diffusion into burrows. These observations, together with laboratory experiments which demonstrate IO^?₃ scavenging by Fe-oxyhydroxides at pH ≤ 8, imply that enrichment of I in terrigenous surface sediments results predominantly from the initial oxidation of I^? to IO^?₃ by microorganisms, followed by sorption on Fe oxides. Upon burial and reduction during anaerobic decomposition, this metal-associated I is released to solution, in a manner similar to phosphate.     

Vertical distribution and feeding types of nematodes from Chetumal Bay, Quintana Roo, Mexico

The vertical distribution and feeding type of nematodes in sediments of Chetumal Bay, Mexico, were studied in five intertidal transects along the urbanized zone in June and December 1995. Sediments were collected with a PVC corer to 6-cm sediment depth and cut immediately into three equal 2-cm depth fractions. Nematode density varied from 7.4 × 10³ to 5.3 × 10⁵ m^?2 in June and from 1.7 × 10⁴ to 7.2 × 10⁵ m^?2 in December. In June, the epistrate feederPseudochromadora sp. was the most abundant in the deepest sediment fraction (4–6 cm), whereas epistrate feeders,Neotonchoides sp.,Desmodora sp., and the deposit feederBathylaimus australis were dominant in the top most sediment (0–2 cm). In December, deposit feeders,Desmolaimus zeelandicus, Parodontophora sp., and the epistrate feederOncholaimus oxyuris were the most abundant in the deepest sediment, whereasNeotonchoides sp. andPseudochromadora sp. dominated the first 2 cm of sediments. Highest nematode density was recorded in the uppermost sediment layer (0–2 cm). Feeding types showed different abundance among transects and between months. There was a seasonal change in vertical distribution of nematodes, with the highest abundance in the deepest sediment layer in December, possibly due to the effect of wind waves on sediments of Chetumal Bay. The trophic composition of the nematode fauna in Chetumal Bay showed a dominance of deposit feeders and epistrate feeders, most likely in response to organic enrichment that is typical of eutrophic environments.     

Nekton habitat quality at shallow water sites in two Rhode Island coastal systems

We evaluated nekton habitat quality at 5 shallow-water sites in 2 Rhode Island systems by comparing nekton densities and biomass, number of species, prey availability and feeding, and abundance of winter flounderPseudopleuronectes americanus. Nekton density and biomass were compared with a 1.75-m² drop ring at 3 sites (marsh, intertidal, and subtidal) in Coggeshall Cove in Narragansett Bay and two subtidal sites (eelgrass and macroalgae) in Ninigret Pond, a coastal lagoon. We collected benthic core samples and examined nekton stomach contents in Coggeshall Cove. We identified 16 species of fish, 16 species of crabs, and 3 species of shrimp in our drop ring samples. A multivariate analysis of variance indicated differences in total nekton, invertebrates, fish, and winter flounder across the five sites. Relative abundance of benthic invertebrate taxa did not match relative abundance of prey taxa identified in the stomachs. Nonmetric multidimensional scaling plots showed groupings in nekton and benthic invertebrate prey assemblages among subtidal, intertidal, and marsh sites in Coggeshall Cove. Stepwise multiple regression indicated that biomass of macroalgae was the most important variable predicting abundance of nekton in Coggeshall Cove, followed by elevation and depth. In Rhode Island systems that do not experience chronic hypoxia, macroalgae adds structure to unvegetated areas and provides refuge for small nekton. All sites sampled were characterized by high abundance and diversity of nekton pointing to the importance of shallow inshore areas for production of fishes and decapods. Measurements of habitat quality should include assessment of the functional significance of a habitat (this can be done by comparing nekton numbers and biomass), some measure of habitat diversity, and a consideration of how habitat quality varies in time and space.     

Dynamic simulation of littoral zone habitats in lower Chesapeake Bay. I. Ecosystem characterization related to model development

The fringing environments of lower Chesapeake Bay include sandy shoals, seagrass meadows, intertidal mud flats, and marshes. A characterization of a fringing ecosystem was conducted to provide initialization and calibration data for the development of a simulation model. The model simulates primary production and material exchange in the littoral zone of lower Chesapeake Bay. Carbon (C) and nitrogen (N) properties of water and sediments from sand, seagrass, intertidal silt-mud, and intertidal marsh habitats of the Goodwin Islands (located within the Chesapeake Bay National Estuarine Research Reserve in Virginia, CBNERR-VA) were determined seasonally. Spatial and temporal differences in sediment microalgal biomass among the habitats were assessed along with annual variations in the distribution and abundance ofZostera marina L. andSpartina alterniflora Loisel. Phytoplankton biomass displayed some seasonality related to riverine discharge, but sediment microalgal biomass did not vary spatially or seasonally. Macrophytes in both subtidal and intertidal habitats exhibited seasonal biomass patterns that were consistent with other Atlantic estuarine ecosystems. Marsh sediment organic carbon and inorganic nitrogen differed significantly from that of the sand, seagrass, and silt habitats. The only biogeochemical variable that exhibited seasonality was low marsh NH₄ ⁺. The subtidal sediments were consistent temporally in their carbon and nitrogen content despite seasonal changes in seagrass abundance. Eelgrass has a comparatively low C:N ratio and is a potential N sink for the ecosystem. Changes in the composition or size of the vegetated habitats could have a dramatic influence over resource partitioning within the ecosystem. A spatial database (or geographic information system, GIS) of the Goodwin Islands site has been initiated to track long-term spatial habitat features and integrate model output and field data. This ecosystem characterization was conducted as part of efforts to link field data, geographic information, and the dynamic simulation of multiple habitats. The goal of these efforts is to examine ecological structure, function, and change in fringing environments of lower Chesapeake Bay.     

Nutrient Fluxes from Sediments in the San Francisco Bay Delta

In September 2011 and March 2012, benthic nutrient fluxes were measured in the San Francisco Bay Delta, across a gradient from above the confluence of the Sacramento and San Joaquin Rivers to Suisun Bay. Dark and illuminated core incubation techniques were used to measure rates of denitrification, nutrient fluxes (phosphate, ammonium, nitrate), and oxygen fluxes. While benthic nutrient fluxes have been assessed at several sites in northern San Francisco Bay, such data across a Delta–Bay transect have not previously been determined. Average September rates of DIN (nitrate, nitrite, ammonium) flux were net positive across all sites, while March DIN flux indicated net uptake of DIN at some sites. Denitrification rates based on the N₂/Ar ratio approach were between 0.6 and 1.0 mmol m^?2 day^?1, similar to other mesotrophic estuarine sediments. Coupled nitrification–denitrification was the dominant denitrification pathway in September, with higher overlying water nitrate concentrations in March resulting in denitrification driven by nitrate flux into the sediments. Estimated benthic microalgal productivity was variable and surprisingly high in Delta sediments and may represent a major source of labile carbon to this ecosystem. Variable N/P stoichiometry was observed in these sediments, with deviations from Redfield driven by processes such as denitrification, variable light/dark uptake of nutrients by microalgae, and adsorption of soluble reactive phosphorus.