Phylogeography of the shrimp Palaemon floridanus (Crustacea: Caridea: Palaemonidae): a partial test of meta‐population genetic structure in the wider Caribbean

Marine organisms with a pelagic stage are often assumed to display minor population structure given their extended larval development and subsequent high long‐distance dispersal ability. Nonetheless, considerable population structure might still occur in species with high dispersal ability due to current oceanographic and/or historical processes. Specifically, for the wider Caribbean and Gulf of Mexico, theoretical and empirical considerations suggest that populations inhabiting each of the following areas should be genetically distinct: Panama, Belize, Southwest Florida (Tampa), and Southeast Florida (Fort Pierce). This study tests the hypothesis of significant genetic differentiation in Palaemon floridanus populations across the wider Caribbean and Gulf of Mexico. Population level comparisons were conducted using sequences of the mtDNA COI. In agreement with predictions, AMOVA and pairwise F_ST values demonstrated population differentiation among most pairs of the studied populations. Only Panama and East Florida populations were genetically similar. An isolation‐with‐migration population divergence model (implemented in IMA2) indicated that population divergence with incomplete lineage sorting can be invoked as the single mechanism explaining genetic dissimilarity between populations from the east and west coast of Florida. Historical demographic analyses indicated demographic expansion of P. floridanus in some localities [recent in Panama and ancient in East Florida and the wider Caribbean (entire dataset)] but constant population in other localities (in Belize and West Florida). This study rejects the idea of panmixia in marine species with high long‐distance dispersal ability. Contemporary and historical processes might interact in a complex manner to determine current phylogeographic patterns.     

Dispersal,survival and delayed growth of benthic foraminiferal propagules

New data support our previously published propagule dispersal hypothesis and show that propagules of some benthic foraminiferal species can survive for two years before growth commences. Following exposure to simulated shallow-water conditions, shallow-water species of benthic foraminifera appeared and grew in large numbers (commonly >100 ind/12 ml sediment) in the <32 µm-size sediment fraction collected from 320 m water depth in the Skagerrak basin (North Sea). None of the shallow-water species that grew abundantly (Planorbulina mediterranensis, Morulaeplecta bulbosa, Bolivina pseudoplicata, Cuneata arctica, Eggerelloides scaber, Gavelinopsis praegeri) seem to grow or reproduce at or in the vicinity of the sampling site. Consequently, they must have been transported there as <32 µm-sized individuals. Their sudden appearance when exposed to shallow-water conditions suggests that they had been transported to the sampling site as propagules and that they could survive in the sediments until conditions became suitable for growth and, for some, reproduction. The lack of agglutination on the proloculi of the agglutinated taxa that appeared in the growth-chambers may enhance their passive transport via currents and, thereby, dispersal. Of all the indigenous foraminiferal species that occur at the sampling site, only Textularia earlandi and Bolivinellina pseudopunctata continued to grow and reproduce when transferred from bathyal (320 m) to simulated shallow-water (0 m) conditions. The former is considered a highly opportunistic species. According to the literature, most of the morphospecies which grew in the experiments are cosmopolitan. Our results indicate substantial inter-specific differences in dispersal potential and support previous suggestions that among free-living species, some serial forms have the potential for long-distance dispersal. Still, oceanographic, physical and ecological boundaries and barriers constrain the distribution of most species. In addition to benthic foraminifera, Gromia spp. (rhizarian protists related to the foraminifera) grew in >60% of the experimental growth-chambers.     

The environmental adaptability and reproductive properties of invasive green alga Codium fragile from the Nan'ao Island,South China Sea

It has been widely recognized that biological invasion has become one of the greatest threats to the ecosystem.Codium fragile is an invasive species which exhibits a variety of attributes like parthenogenesis, winter fragment,and vegetative reproduction; and therefore, it has become a successful invader, colonizing most subtropical regions. In China’s southeast coastal aquaculture waters, the green algal bloom caused by C. fragile will probably become a serious problem. In order to understand mo...     

Paradigm shifts in community ecology: Open versus closed units,challenges and limits of connectivity studies

Due to the presence of the complex life cycles involving a benthic adult and a pelagic larval phase, the study of benthic community dynamics cannot ignore investigations of the processes occurring in the water column. Current investigations focus mainly on larval dispersal from an evolutionary and a biogeographic perspective, taking into account also population connectivity, conservation planning and coastal management. In the present paper we underline the need to improve knowledge of the main traits of marine invertebrate life cycles, highlighting the limits and challenges of current approaches. Firstly, we summarized the changing approaches within community studies, following the paradigm shifts found in recent marine ecological research, from supply‐side ecology to connectivity, and involving the concepts of open and closed populations. Secondly, we analysed the main larval traits influencing dispersal, paying particular attention to pelagic larval duration in light of the few available data for connectivity studies. The difficulty in estimating many of the main traits of larval ecology make numerical simulation fundamental for a better understanding of the relationship between propagule dispersal and seawater dynamics, both being highly variable. We conclude that some essential biological information is still lacking for the proper integration of the modeling approaches. Thus it is necessary to further investigate the life‐cycle traits and physiological and ecological characteristics of each species, an approach known as autecology or natural history. All too frequently modern ecologists ignore such reductionist approaches, although they are essential for a full understanding of processes, such as connectivity and metapopulation dynamics.     

The coral communities of the Islas Marias archipelago,Mexico: structure and biogeographic relevance to the Eastern Pacific

Various authors have suggested that the Islas Marias archipelago, Mexico, may play a significant biogeographic role in the dispersal of Indo Pacific coral species into the Eastern Pacific; however, the coral communities of this archipelago have received scarce attention to date. Here, we first addressed coral community structure across the islands and, by employing ordination analysis, minimum spanning tree and particle‐tracking experiments, used this information to evaluate the relevance of the archipelago for coral dispersal. Twenty‐four coral communities were recorded in the archipelago. Coral cover varied significantly among islands: Maria Cleofas had large values (38.5%), intermediate values were observed for Maria Madre (26.5%) and Maria Magdalena (22.84%), and relatively low values were recorded for San Juanito (18.5%). Coral communities mainly consisted of Pocillopora (57.3%) and Porites (25.5%) species, while species of Pavona (16%) and Psammocora (0.6%) made relatively minor contributions. Thirteen stony coral species were identified in the archipelago; of these Psammocora profundacella and Pavona duerdeni represent new records. Ordination analysis, minimum spanning tree and particle‐tracking experiments suggested similar connecting paths in the studied area; in general, the Islas Marias stands as a route for coral dispersal of Indo Pacific species into the Northeastern Pacific. In a regional context, the Islas Marias has three major biogeographic implications to coral dispersal: (i) the archipelago stands as a major stepping stone for the transport of species and individuals among the Revillagigedo archipelago, the Gulf of California and the tropical Mexican Pacific; (ii) the Islas Marias may play a seminal role in maintaining the genetic connectivity between southern and northern coral populations along the Mexican Pacific and (iii) because of its relatively pristine status and low levels of human impact, the archipelago may potentially serve as a source of coral propagules for ecosystem recovery in the Gulf of California and along the Pacific coast of the Mexican mainland following natural and/or human induced perturbations.     

High connectivity and directional gene flow in European Atlantic and Mediterranean populations of Ciona intestinalis sp. A

Understanding the factors that cause population divergence has long been of interest to marine biologists in their attempts to interpret the effect of human‐mediated vectors. Broadcast‐spawning species with limited dispersal capability are excellent candidates to measure the present‐day patterns of genetic diversity. The tunicate Ciona intestinalis (Ascidiacea) is comprised of a complex of morphologically cryptic species that form vigorous aggregates in eutrophic habitats (harbors, gulfs and lagoons) where they can compete with the epibenthic community and cause biofouling problems. This study investigated biogeographic variability and migration patterns of C. intestinalis sp. A along Northeast Atlantic and Mediterranean coasts using microsatellite markers. Data presented here on 371 specimens collected from 17 populations reveal high genetic polymorphism, but with a deficit of heterozygote deficiency. Absence of evidence for isolation by distance suggests that the genetic patterns do not reflect the geographic distribution of sampled populations. Substantial gene flow and artificial potential for dispersal boost high levels of within‐population genetic variability and prevent genetic differentiation within and between seas. A predominant eastward migration pattern was revealed by the data set, with very limited opportunity for C. intestinalis sp. A to travel westward. This directional movement indicates that other properties (e.g. habitat quality, genetic traits, mating system, life cycle) may cause adaptive divergence at a large biogeographic scale.     

Toward a mechanistic understanding of larval dispersal: insights from genomic fingerprinting of the deep-sea hydrothermal vent tubeworm Riftia pachyptila

Larval dispersal is critical for the maintenance of species populations in patchy and ephemeral hydrothermal vent habitats. On fast‐spreading ridges, such as the East Pacific Rise, rates of habitat turnover are comparable to estimated lifespans of many of the inhabiting species. Traditionally, dispersal questions have been addressed with two very different approaches, larval studies and population genetics. Population genetic studies of vent‐endemic species have been informative for determining whether patterns of dispersal are suggestive of stepping stone or island models and estimating rates of gene flow (effective migrants per generation) over broad geographic ranges. However, these studies leave fundamental questions unanswered about the specific mechanisms by which larvae disperse and species maintain their populations and biogeographic ranges. With the goal of examining genetic structure and elucidating alternative larval dispersal mechanisms, we employed a genomic DNA fingerprinting technique, amplified fragment length polymorphisms (AFLPs). To assess the potential utility of AFLPs, and genetic structure of the hydrothermal vent tubeworm Riftia pachyptila, genomic ‘fingerprints’ were recovered from 29 individuals from five vent fields spanning a distance of up to c. 5000 km along the East Pacific Rise. In contrast to previous population genetic studies that found little to no genetic structure using allozymes and mitochondrial DNA, genetic analyses of 630 polymorphic AFLP loci identified distinct subclades within R. pachyptila populations. Significant levels of differentiation were observed among populations from all vent regions as well as within each region. Discrete assemblages of tubeworms separated by as little as c. 400 m within a given vent region were genetically distinguishable and cohorts (based on size‐frequency distribution) within an aggregation were found to be most closely related. These results suggest that mechanisms of larval dispersal act to retain cohort fidelity in R. pachyptila.     

Fine‐scale phylogeography reveals cryptic biodiversity in Pederson's cleaner shrimp,Ancylomenes pedersoni (Crustacea: Caridea: Palaemonidae), along the Florida Reef Tract

Populations of continuously distributed marine organisms that disperse via pelagic larvae are often assumed to exist in a state of genetic panmixia because of their potential ability for long‐distance dispersal. However, obligate symbionts may have more restricted gene flow due to recruitment limitations, making host specificity an important potential driver of biodiversity. To explore the tension between broad dispersal ability and limited recruitment potential, we used sequences of mtDNA cytochrome c oxidase subunit I (COI) to assess the fine‐scale phylogeography of the cleaner shrimp, Ancylomenes pedersoni, an obligate symbiont of sea anemones, along 300 km of the Florida Reef Tract (FRT). The results indicate high genetic diversity within A. pedersoni populations along the FRT. Pair‐wise ?_ST values indicate significant genetic structuring between northern (Fort Lauderdale and Upper Keys) and southwestern (Lower Keys) populations, with significant isolation by distance. Two divergent COI haplotype lineages were detected through statistical parsimony analysis: one evenly distributed across the entire FRT (Clade 1) and one found primarily in two sample localities in the Lower Keys (Clade 2). Phylogenetic analyses using 16S‐rDNA indicates that this genetic diversity is of paraphyletic origin, and possibly the result of multiple colonization events. These results reveal a complex demographic and evolutionary history for A. pedersoni populations and provide the first evidence of highly divergent intra‐specific lineages independently colonizing the FRT. Because the FRT is a highly impacted coral reef system, understanding phylogeographic patterns along it has value beyond documentation of the factors that generate genetic diversity in tropical reef systems: these data are critical for creating scientifically based management strategies.     

红树植物繁殖体发育过程的能量变化

探讨了桐花树 (Aegicerascorniculatum)、秋茄 (Kandeliacandel)、角果木 (Ceriopstagal)、海莲 (Bruguierasexangula)和木榄 (Bruguieragymnorrhiza)5种红树植物繁殖体的热值及其动态变化。结果表明 :(1)海南东寨港5种红树植物繁殖体的热值大小不同 ,其中花的热值最高是桐花树 ,为20.423kJ/g,花的热值最低是木榄 ,为19.214kJ/g;果的热值最高是角果木 ,为20.255kJ/g,果的热值最低是木榄 ,为18.582kJ/g;成熟胚轴的热值最高是角果木 ,为19.792kJ/g,成熟胚轴的热值最低是桐花树 ,为16.827kJ/g。 (2)随着纬度的增加 ,桐花树各期繁殖体热值略为提高 ,而秋茄则相反略为降低。 (3)随着繁殖体从花、果至胚轴发育过程 ,热值逐渐降低 ,而单个繁殖体的生物量及其能量贮量则随之提高。     

High connectivity between sea lough populations of a planktonic larval disperser with the adjacent open coast

Several previous studies have reported high levels of genetic differentiation between populations inside European Marine Reserves and their adjacent coastlines for a direct‐developing species. These studies suggest that sea loughs may not represent the most suitable sites for inclusion into Marine Protected Area (MPA) or Marine Reserve networks as they are not well connected to other populations. However, many marine species have pelagic larvae, and the connectivity of populations of such species inside sea loughs with non‐lough populations remains unknown. Here, I investigated the levels of gene flow between populations of the acorn barnacle Semibalanas balanoides inside and outside Strangford Lough, Northern Ireland; this species has a long‐lived pelagic larvae (4–6 weeks). There were no significant differences in the levels of genetic diversity between sea lough and non‐lough populations and no evidence for genetic differentiation between any of the populations examined; the populations appear well mixed and well connected, in contrast to what has been reported for a previous direct‐developing species.     

Hierarchical analysis of the population genetic structure in Concholepas concholepas,a marine mollusk with a long‐lived dispersive larva

For most marine invertebrate species, dispersal is achieved mainly or exclusively by pelagic larvae. When the duration of the pelagic larval stage is long, genetic homogeneity over large geographic scales is expected. However, genetic structure has often been reported over small spatial scales, suggesting that more complex processes occur than a simple positive relationship between pelagic larval duration and gene flow. Concholepas concholepas has a larval stage that can last up to 3 months in the water column with a wide distributional range covering from 6°S to 56°S. We used a hierarchical sampling technique to test if the genetic homogeneity of this highly dispersive species is maintained throughout its total geographic range in spite of environmental heterogeneity. In the three studied regions (Antofagasta Bay, Valdivia and Patagonia), a spatial pattern of isolation by distance in conjunction with a spatial genetic structure was observed. Within each region, different spatial genetic patterns were detected. In Antofagasta Bay and Valdivia there was evidence of substantial gene flow among populations, whereas in Patagonia, populations showed genetic structure and a unique, genetically isolated location was identified. These results revealed the existence of spatial differences in the genetic patterns among regions with different coastal topographies in C. concholepas, and give us new insights into the inter‐relationships of larval dispersal potential, actual larval dispersal and physical processes. Regarding the sustainable management of C. concholepas, two important issues are derived from this study: (i) to highlight the need for a regional context in the management of C. concholepas, (ii) to determine the distinctiveness of the most austral population and to focus on the conservation efforts due to the relevance of this area.     

Highly restricted gene flow between disjunct populations of the skunk clownfish (Amphiprion akallopisos) in the Indian Ocean

The skunk clownfish (Amphiprion akallopisos) has a disjunct distribution, occurring in the Eastern Indian Ocean (EIO) and the Western Indian Ocean (WIO), separated by several thousands of kilometres. Information on connectivity of marine species is very important for the correct spacing of marine protected areas, a powerful instrument for the protection of coral reefs. The population genetic structure of A. akallopisos was analysed in order to investigate connectivity amongst populations and to explain the disjunct distribution of the species. A fragment of the mitochondrial control region was used to investigate the genetic population structure. Fin clips were collected from 263 individuals at 14 sites in the WIO and three sites in the EIO. The obtained DNA sequences were used to calculate genetic diversity, evaluate demographic history and to construct a haplotype network. An analysis of molecular variance (AMOVA) was conducted to evaluate the significance of the observed genetic population structure. None of the identified 69 haplotypes was shared between the WIO and EIO. Haplotype as well as nucleotide diversity was considerably higher in the EIO than in the WIO. Significant genetic population structure was revealed by an AMOVA with an overall φ_st‐value of 0.28 (P < 0.001) in the Indian Ocean. The overall AMOVA (φ_st = ?0.00652) was not significant in the EIO, but was significant in the WIO (φ_st = 0.016; P < 0.01). Demographic analysis indicated population expansion in the EIO and WIO. Population genetic analysis revealed highly restricted gene flow between the EIO and WIO. Genetic diversity was much higher in the EIO than in the WIO, suggesting that the EIO is the geographical origin of the species. Given the large distance between the disjunct populations and the short pelagic larval duration, long‐distance dispersal is rather unlikely. A stepping stone model involving islands in the Central Indian Ocean is a more likely scenario for colonization of the WIO.     

Evidence of Ostrea lurida Carpenter, 1864, population structure in Puget Sound,WA, USA

Species traits that carry adaptive advantages such as reproductive timing and stress resilience may differ among populations. Knowledge and consideration of these traits should, therefore, be integrated into conservation efforts that include long‐term persistence of species. To test for adaptive differences between Olympia oyster, Ostrea lurida, populations a reciprocal transplant experiment was carried out monitoring survival, growth and reproduction using three established populations of O. lurida within Puget Sound, WA, USA. Performance differed for each population. Ostrea lurida from Dabob Bay had the highest survival at all sites but the lowest reproductive activity and growth. Oysters from Oyster Bay demonstrated the greatest proportion of brooding females at a majority of sites with moderate growth and survival. Together these data suggest the existence of O. lurida population structure within Puget Sound and provide information on how broodstock should be selected for restoration purposes.     

Genetic variation of Laminaria japonica (Phaeophyta) populations in China as revealed by RAPD markers

For the population genetics analysis of the naturally grown brown seaweed Laminaria japonica (Laminariales,Phaeophyta) sampled from Dalian,Yantai,Weihai,Rongcheng and Qingdao in China,ten primers were employed to produce 88 bands as revealed by randomly amplified polymorphic DNA (RAPD) markers,and all these bands were polymorphic.According to these band patterns,there were 94 distinct phenotypes occurred in 100 samples indicating the high heterozygosity of this kelp.Dalian population samples showed the highest percentage of polymorphism (71.67%),and also the higher diversity estimated on the basis of the Shannon’s index (8.498),suggesting that this population could be chosen as the best resource for genetic breeding.The highest diversity of Yantai population possibly resulted from the introduction of L.longissima used for interspecific cross breeding with L.japonica cultivated in China.From Dalian southwards to Qingdao,the genetic variation of the five populations became less with a decrease in latitude,possibly due to the natural selection especially of high temperature.The genetic distance (Φ ST values) of the five populations was a little significantly correlated with the geographical distance (r=0.496) at P =0.05 by Mantel’s test.Weihai,Rongcheng and Yantai populations were closely grouped genetically together by Neighbor-joining cluster analysis probably in that the dispersal of the kelp by propagules more easily occurring in the range of relatively short distance.The analysis of molecular variance (AMOVA) also demonstrated that the relatively higher variation occurred among populations (71.49%) at an extremely significant level (P <0.000 1).All these evidence showed that there was a relatively distinct genetic differentiation among the sampled kelp populations,and L.japonica grown in China was also rather heterozygous in heredity.     

Comparative genetic structure in two high-dispersal prawn species from the south-west Indian Ocean

The penaeid prawns Fenneropenaeus indicus and Metapenaeus monoceros support shallow-water prawn fisheries in the south-west Indian Ocean. They are sympatric and have similar life histories, including developmental stages that depend on estuarine and marine habitats and a short dispersal duration. Nevertheless, M. monoceros juveniles display a more generalist habitat preference in estuaries and recruit to offshore habitats during a different season than F. indicus. We hypothesised that these differences would affect dispersal patterns, leading to dissimilar geographic genetic structure between the two taxa. Given their short dispersal phase, we also hypothesised that the Mozambique Channel would form a barrier to dispersal between the southeastern African mainland and Madagascar sites. Population differentiation was assessed based on analysis of mitochondrial DNA control-region sequences. Both species displayed high haplotype and low nucleotide diversity. Pairwise ?_ST statistics supported the existence of admixed populations along the African mainland sites for both species, with geographic distance isolating populations at the extremes of the sampled range (Kenya and east coast of South Africa). The Madagascar population differed significantly from African mainland populations. The concordant patterns in population differentiation suggest that F. indicus and M. monoceros can be considered as single African stocks, or fisheries management units.     

Changing structure of benthic foraminiferal communities: implications from experimentally grown assemblages from coastal Georgia and Florida,USA

Environmental changes such as ocean warming or sea‐level rise have a profound impact on shallow‐water coastal environments. Benthic foraminifera have long been successfully used as indicators for ecologic responses. The propagule method is a useful tool to evaluate the reactions of entire assemblages of foraminifera when exposed to different environmental conditions. Here we present results from growth experiments of foraminiferal assemblages from three sites in coastal Georgia and Florida (USA) under different temperatures (18, 24 and 30 °C) and salinities (15 and 35). Results show that assemblages grown at the higher temperatures had greater abundances of foraminifera, whereas salinity was the primary factor in shaping the composition of the experimentally grown assemblages from the three sites. We also show that experimentally grown assemblages contain high numbers of ‘exotic’ species that result from successful propagule recruitment from outside of the original environments (e.g. the open shelf). Overall, opportunistic and previously termed ‘pioneer species’ proved to be the most successful constituents of the experimental assemblages, showing that reactions of foraminiferal assemblages to environmental changes can appear remarkably quickly (e.g. in the course of several weeks). Our observations on the faunal reactions to different temperatures and salinities indicate that ongoing environmental alterations of coastal areas will likely result in significant changes in the shallow‐water foraminiferal assemblages of the coasts of Georgia and Florida. As such, our study provides general insights into the ecologic effects of current climate change.     

STUDIES ON THE MARINE CLADOCERA OF CHINA Ⅲ. REPRODUCTION

Studies are made on the reproduction of two common marine Cladocera (Penilia avirostris, Evadne ter-gestina) of China with emphasis on the fertility of parthenogenetic females (P♀). A positive correlation exists between the fertility and the size of the same species; but no such correlation is found between the fertility and the size of different species. The fertility is, on the whole, higher in summer and is related to the seasonal fluctuation of population density, both attaining their maximum period in summer; but the former appears about half a month earlier than the latter, A brief account is given of the sexual reproduction, including the respective size and the seasonal variation of sexual individuals (S♀,♂) together with a note on the sex-ratio and the characteristics of resting egg.     

Deep‐water Corallium rubrum (L., 1758) from the Mediterranean Sea: preliminary genetic characterisation

The precious red coral Corallium rubrum (L., 1758) lives in the Mediterranean Sea and adjacent Eastern Atlantic Ocean on subtidal hard substrates. Corallium rubrum is a long‐lived gorgonian coral that has been commercially harvested since ancient times for its red axial calcitic skeleton and which, at present, is thought to be in decline because of overexploitation. The depth distribution of C. rubrum is known to range from c. 15 to 300 m. Recently, live red coral colonies have been observed in the Strait of Sicily at depths of c. 600–800 m. This record sheds new light on the ecology, biology, biogeography and dispersal mechanism of this species and calls for an evaluation of the genetic divergence occurring among highly fragmented populations. A genetic characterization of the deep‐sea red coral colonies has been done to investigate biological processes affecting dispersal and population resilience, as well as to define the level of isolation/differentiation between shallow‐ and deep‐water populations of the Mediterranean Sea. Deep‐water C. rubrum colonies were collected at two sites (south of Malta and off Linosa Island) during the cruise MARCOS of the R/V Urania. Collected colonies were genotyped using a set of molecular markers differing in their level of polymorphism. Microsatellites have been confirmed to be useful markers for individual genotyping of C. rubrum colonies. ITS‐1 and mtMSH sequences of deep‐water red coral colonies were found to be different from those found in shallow water colonies, suggesting the possible occurrence of genetic isolation among shallow‐ and deep‐water populations. These findings suggest that genetic diversity of red coral over its actual range of depth distribution is shaped by complex interactions among geological, historical, biological and ecological processes.     

孢囊及其与赤潮爆发关系的研究进展

某些藻类(特别是甲藻),在不适宜生长的恶劣环境条件下能形成休眠孢囊。孢囊下沉到海底,以渡过不良的生存条件。一旦环境条件适宜,孢囊就大量萌发形成浮游细胞和优势群体,从而诱导赤潮的形成。简述了当前国际上对孢囊研究的最新进展,从孢囊和营养细胞相互转化的角度探索了孢囊与赤潮形成的关系,以及分子生物学技术在赤潮生物及其孢囊的定性、定量及赤潮发生监测中的应用。