Is it possible to discern Striga weed (Striga hermonthica) infestation levels in maize agro-ecological systems using in-situ spectroscopy?

The invasion by Striga in most cereal crop fields in Africa has posed a significant threat to food security and has caused substantial socioeconomic losses. Hyperspectral remote sensing is an effective means to discriminate plant species, providing possibilities to track such weed invasions and improve precision agriculture. However, essential baseline information using remotely sensed data is missing, specifically for the Striga weed in Africa. In this study, we investigated the spectral uniqueness of Striga compared to other co-occurring maize crops and weeds. We used the in-situ FieldSpec® Handheld 2™ analytical spectral device (ASD), hyperspectral data and their respective narrow-band indices in the visible and near infrared (VNIR) region of the electromagnetic spectrum (EMS) and four machine learning discriminant algorithms (i.e. random forest: RF, linear discriminant analysis: LDA, gradient boosting: GB and support vector machines: SVM) to discriminate among different levels of Striga (Striga hermonthica) infestations in maize fields in western Kenya. We also tested the utility of Sentinel-2 waveband configurations to map and discriminate Striga infestation in heterogenous cereal crop fields. The in-situ hyperspectral reflectance data were resampled to the spectral waveband configurations of Sentinel-2 using published spectral response functions. We sampled and detected seven Striga infestation classes based on three flowering Striga classes (low, moderate and high) against two background endmembers (soil and a mixture of maize and other co-occurring weeds). A guided regularized random forest (GRRF) algorithm was used to select the most relevant hyperspectral wavebands and vegetation indices (VIs) as well as for the resampled Sentinel-2 multispectral wavebands for Striga infestation discrimination. The performance of the four discriminant algorithms was compared using classification accuracy assessment metrics. We were able to positively discriminate Striga from the two background endmembers i.e. soil and co-occurring vegetation (maize and co-occurring weeds) based on the few GRRF selected hyperspectral vegetation indices and the GRRF selected resampled Sentinel-2 multispectral bands. RF outperformed all the other discriminant methods and produced the highest overall accuracy of 91% and 85%, using the hyperspectral and resampled Sentinel-2 multispectral wavebands, respectively, across the four different discriminant models tested in this study. The class with the highest detection accuracy across all the four discriminant algorithms, was the “exclusively maize and other co-occurring weeds” (>70%). The GRRF reduced the dimensionality of the hyperspectral data and selected only 9 most relevant wavebands out of 750 wavebands, 6 VIs out of 15 and 6 out of 10 resampled Sentinel-2 multispectral wavebands for discriminating among the Striga and co-occurring classes. Resampled Sentinel-2 multispectral wavebands 3 (green) and 4 (red) were the most crucial for Striga detection. The use of the most relevant hyperspectral features (i.e. wavebands and VIs) significantly (p ≤ 0.05) increased the overall classification accuracy and Kappa scores (±5% and ±0.2, respectively) in all the machine learning discriminant models. Our results show the potential of hyperspectral, resampled Sentinel-2 multispectral datasets and machine learning discriminant algorithms as a tool to accurately discern Striga in heterogenous maize agro-ecological systems.     

Remote estimation of crop and grass chlorophyll and nitrogen content using red-edge bands on Sentinel-2 and -3

Sentinel-2 is planned for launch in 2014 by the European Space Agency and it is equipped with the Multi Spectral Instrument (MSI), which will provide images with high spatial, spectral and temporal resolution. It covers the VNIR/SWIR spectral region in 13 bands and incorporates two new spectral bands in the red-edge region, which can be used to derive vegetation indices using red-edge bands in their formulation. These are particularly suitable for estimating canopy chlorophyll and nitrogen (N) content. This band setting is important for vegetation studies and is very similar to the ones of the Ocean and Land Colour Instrument (OLCI) on the planned Sentinel-3 satellite and the Medium Resolution Imaging Spectrometer (MERIS) on Envisat, which operated from 2002 to early 2012. This paper focuses on the potential of Sentinel-2 and Sentinel-3 in estimating total crop and grass chlorophyll and N content by studying in situ crop variables and spectroradiometer measurements obtained for four different test sites. In particular, the red-edge chlorophyll index (CI_red-edge), the green chlorophyll index (CI_green) and the MERIS terrestrial chlorophyll index (MTCI) were found to be accurate and linear estimators of canopy chlorophyll and N content and the Sentinel-2 and -3 bands are well positioned for deriving these indices. Results confirm the importance of the red-edge bands on particularly Sentinel-2 for agricultural applications, because of the combination with its high spatial resolution of 20 m.     

Evaluating the potential of the red edge channel for C3 (Festuca spp.) grass discrimination using Sentinel-2 and Rapid Eye satellite image data

Integrating the Red Edge channel in satellite sensors is valuable for plant species discrimination. Sentinel-2 MSI and Rapid Eye are some of the new generation satellite sensors that are characterized by finer spatial and spectral resolution, including the red edge band. The aim of this study was to evaluate the potential of the red edge band of Sentinel-2 and Rapid Eye, for mapping festuca C3 grass using discriminant analysis and maximum likelihood classification algorithms. Spectral bands, vegetation indices and spectral bands plus vegetation indices were analysed. Results show that the integration of the red edge band improved the festuca C3 grass mapping accuracy by 5.95 and 4.76% for Sentinel-2 and Rapid Eye when the red edge bands were included and excluded in the analysis, respectively. The results demonstrate that the use of sensors with strategically positioned red edge bands, could offer information that is critical for the sustainable rangeland management.     

Estimating LAI and mapping canopy storage capacity for hydrological applications in wattle infested ecosystems using Sentinel-2 MSI derived red edge bands

This study assessed the strength of Sentinel-2 multispectral instrument (MSI) derived Red Edge (RE) bands in estimating Leaf Area Index (LAI) and mapping canopy storage capacity (CSC) for hydrological applications in wattle infested ecosystems. To accomplish this objective, this study compared the estimation strength of models derived, using standard bands (all bands excluding the RE band) with those including RE bands, as well as different vegetation indices. Sparse Partial Least Squares (SPLSR) and Partial Least Squares Regression (PLSR) ensembles were used in this study. Results showed that the RE spectrum covered by the Sentinel-2 MSI satellite reduced the estimation error by a magnitude of 0.125 based on simple ratio (RE SR) vegetation indices from 0.157 m²· m^?2 based on standard bands, and by 0.078 m²· m^?2 based on red edge normalised difference vegetation (NDVI-RE). The optimal models for estimating LAI to map CSC were obtained based on the RE bands centered at 705 nm (Band 5), 740 nm (Band 6), 783 nm (Band 7) as well as 865 nm (Band 8a). A root mean square error of prediction (RMSEP) of 0.507 m²· m^?2 a relative root mean square error of prediction (RRMSEP) of 11.3% and R² of 0.91 for LAI and a RMSEP of 0.246 m²/m² (RRMSEP = 7.9%) and R² of 0.91 for CSC were obtained. Overall, the findings of this study underscore the relevance of the new copernicus satellite product in rapid monitoring of ecosystems that are invaded by alien invasive species.     

Spectral discrimination of giant reed (Arundo donax L.): A seasonal study in riparian areas

The giant reed (Arundo donax L.) is amongst the one hundred worst invasive alien species of the world, and it is responsible for biodiversity loss and failure of ecosystem functions in riparian habitats. In this work, field spectroradiometry was used to assess the spectral separability of the giant reed from the adjacent vegetation and from the common reed, a native similar species.The study was conducted at different phenological periods and also for the giant reed stands regenerated after mechanical cutting (giant reed_RAC). A hierarchical procedure using Kruskal–Wallis test followed by Classification and Regression Trees (CART) was used to select the minimum number of optimal bands that discriminate the giant reed from the adjacent vegetation. A new approach was used to identify sets of wavelengths – wavezones – that maximize the spectral separability beyond the minimum number of optimal bands. Jeffries Matusita and Bhattacharya distance were used to evaluate the spectral separability using the minimum optimal bands and in three simulated satellite images, namely Landsat, IKONOS and SPOT.Giant reed was spectrally separable from the adjacent vegetation, both at the vegetative and the senescent period, exception made to the common reed at the vegetative period. The red edge region was repeatedly selected, although the visible region was also important to separate the giant reed from the herbaceous vegetation and the mid infrared region to the discrimination from the woody vegetation. The highest separability was obtained for the giant reed_RAC stands, due to its highly homogeneous, dense and dark-green stands. Results are discussed by relating the phenological, morphological and structural features of the giant reed stands and the adjacent vegetation with their optical traits. Weaknesses and strengths of the giant reed spectral discrimination are highlighted and implications of imagery selection for mapping purposes are argued based on present results.     

Comparing methods for mapping canopy chlorophyll content in a mixed mountain forest using Sentinel-2 data

The Sentinel-2 Multi-Spectral Imager (MSI) has three spectral bands centered at 705, 740, and 783 nm wavelengths that exploit the red-edge information useful for quantifying plant biochemical traits. This sensor configuration is expected to improve the prediction accuracy of vegetation chlorophyll content. In this work, we assessed the performance of several statistical and physical-based methods in retrieving canopy chlorophyll content (CCC) from Sentinel-2 in a heterogeneous mixed mountain forest. Amongst the algorithms presented in the literature, 13 different vegetation indices (VIs), a non-parametric statistical approach, and two radiative transfer models (RTM) were used to assess the CCC prediction accuracy. A field campaign was conducted in July 2017 to collect in situ measurements of CCC in Bavarian forest national park, and the cloud-free Sentinel-2 image was acquired on 13 July 2017. The leave-one-out cross-validation technique was used to compare the VIs and the non-parametric approach. Whereas physical-based methods were calibrated using simulated data and validated using the in situ reference dataset. The statistical-based approaches, such as the modified simple ratio (mSR) vegetation index and the partial least square regression (PLSR) outperformed all other techniques. As such the modified simple ratio (mSR3) (665, 865) gave the lowest cross-validated RMSE of 0.21 g/m² (R² = 0.75). The PLSR resulted in the highest R² of 0.78, and slightly higher RMSE =0.22 g/m² than mSR3. The physical-based approach-INFORM inversion using look-up table resulted in an RMSE =0.31 g/m², and R² = 0.67. Although mapping CCC using these methods revealed similar spatial distribution patterns, over and underestimation of low and high CCC values were observed mainly in the statistical approaches. Further validation using in situ data from different terrestrial ecosystems is imperative for both the statistical and physical-based approaches' effectiveness to quantify CCC before selecting the best operational algorithm to map CCC from Sentinel-2 for long-term terrestrial ecosystems monitoring across the globe.     

Non-destructive estimation of foliar chlorophyll and carotenoid contents: Focus on informative spectral bands

Leaf pigment content provides valuable insight into the productivity, physiological and phenological status of vegetation. Measurement of spectral reflectance offers a fast, nondestructive method for pigment estimation. A number of methods were used previously for estimation of leaf pigment content, however, spectral bands employed varied widely among the models and data used. Our objective was to find informative spectral bands in three types of models, vegetation indices (VI), neural network (NN) and partial least squares (PLS) regression, for estimating leaf chlorophyll (Chl) and carotenoids (Car) contents of three unrelated tree species and to assess the accuracy of the models using a minimal number of bands. The bands selected by PLS, NN and VIs were in close agreement and did not depend on the data used. The results of the uninformative variable elimination PLS approach, where the reliability parameter was used as an indicator of the information contained in the spectral bands, confirmed the bands selected by the VIs, NN, and PLS models. All three types of models were able to accurately estimate Chl content with coefficient of variation below 12% for all three species with VI showing the best performance. NN and PLS using reflectance in four spectral bands were able to estimate accurately Car content with coefficient of variation below 14%. The quantitative framework presented here offers a new way of estimating foliar pigment content not requiring model re-parameterization for different species. The approach was tested using the spectral bands of the future Sentinel-2 satellite and the results of these simulations showed that accurate pigment estimation from satellite would be possible.     

SENTINEL-2A red-edge spectral indices suitability for discriminating burn severity

Fires are a problematic and recurrent issue in Mediterranean ecosystems. Accurate discrimination between burn severity levels is essential for the rehabilitation planning of burned areas. Sentinel-2A MultiSpectral Instrument (MSI) record data in three red-edge wavelengths, spectral domain especially useful on agriculture and vegetation applications. Our objective is to find out whether Sentinel-2A MSI red-edge wavelengths are suitable for burn severity discrimination. As study area, we used the 2015 Sierra Gata wildfire (Spain) that burned approximately 80 km². A Copernicus Emergency Management Service (EMS)-grading map with four burn severity levels was considered as reference truth. Cox and Snell, Nagelkerke and McFadde pseudo-R² statistics obtained by Multinomial Logistic Regression showed the superiority of red-edge spectral indices (particularly, Modified Simple Ratio Red-edge, Chlorophyll Index Red-edge, Normalized Difference Vegetation Index Red-edge) over conventional spectral indices. Fisher's Least Significant Difference test confirmed that Sentinel-2A MSI red-edge spectral indices are adequate to discriminate four burn severity levels.     

Optimization of spectral indices and long-term separability analysis for classification of cereal crops using multi-spectral RapidEye imagery

Crop monitoring using remotely sensed image data provides valuable input for a large variety of applications in environmental and agricultural research. However, method development for discrimination between spectrally highly similar crop species remains a challenge in remote sensing. Calculation of vegetation indices is a frequently applied option to amplify the most distinctive parts of a spectrum. Since no vegetation index exist, that is universally best-performing, a method is presented that finds an index that is optimized for the classification of a specific satellite data set to separate two cereal crop types. The η² (eta-squared) measure of association – presented as novel spectral separability indicator – was used for the evaluation of the numerous tested indices. The approach is first applied on a RapidEye satellite image for the separation of winter wheat and winter barley in a Central German test site. The determined optimized index allows a more accurate classification (97%) than several well-established vegetation indices like NDVI and EVI (<87%). Furthermore, the approach was applied on a RapidEye multi-spectral image time series covering the years 2010–2014. The optimized index for the spectral separation of winter barley and winter wheat for each acquisition date was calculated and its ability to distinct the two classes was assessed. The results indicate that the calculated optimized indices perform better than the standard indices for most seasonal parts of the time series. The red edge spectral region proved to be of high significance for crop classification. Additionally, a time frame of best spectral separability of wheat and barley could be detected in early to mid-summer.     

Evaluation of forest fire on Madeira Island using Sentinel-2A MSI imagery

A forest fire started on August 8th, 2016 in several places on Madeira Island causing damage and casualties. As of August 10th the local media had reported the death of three people, over 200 people injured, over 950 habitants evacuated, and 50 houses damaged. This study presents the preliminary results of the assessment of several spectral indices to evaluate the burn severity of Madeira fires during August 2016. These spectral indices were calculated using the new European satellite Sentinel-2A launched in June 2015. The study confirmed the advantages of several spectral indices such as Normalized Difference Vegetation Index (NDVI), Green Normalized Difference Vegetation Index (GNDVI), Normalized Burn Ratio (NBR) and Normalized Difference Vegetation Index (NDVIreXn) using red-edge spectral bands to assess the post-fire conditions. Results showed high correlation between NDVI, GNDVI, NBR and NDVIre1n spectral indices and the analysis performed by Copernicus Emergency Management Service (EMSR175), considered as the reference truth. Regarding the red-edge spectral indices, the NDVIre1n (using band B5, 705 nm) presented better results compared with B6 (740 nm) and B7 (783 nm) bands. These preliminary results allow us to assume that Sentinel-2 will be a valuable tool for post-fire monitoring. In the future, the two twin Sentinel-2 satellites will offer global coverage of the Madeira Archipelago every five days, therefore allowing the simultaneous study of the evolution of the burnt area and reforestation information with high spatial (up to 10 m) and temporal resolution (5 days).     

Efficacy of multi-season Sentinel-2 imagery for compositional vegetation classification

Vegetation maps are essential tools for the conservation and management of landscapes as they contain essential information for informing conservation decisions. Traditionally, maps have been created using field-based approaches which, due to limitations in costs and time, restrict the size of the area for which they can be created and frequency at which they can be updated. With the increasing availability of satellite sensors providing multi-spectral imagery with high temporal frequency, new methods for efficient and accurate vegetation mapping have been developed. The objective of this study was to investigate to what extent multi-seasonal Sentinel-2 imagery can assist in mapping complex compositional classifications at fine spatial scales. We deliberately chose a challenging case study, namely a visually and structurally homogenous scrub vegetation (known as kwongan) of Western Australia. The classification scheme consists of 24 target classes and a random 60/40 split was used for model building and validation. We compared several multi-temporal (seasonal) feature sets, consisting of numerous combinations of spectral bands, vegetation indices as well as principal component and tasselled cap transformations, as input to four machine learning classifiers (Support Vector Machines; SVM, Nearest Neighbour; NN, Random Forests; RF, and Classification Trees; CT) to separate target classes. The results show that a multi-temporal feature set combining autumn and spring images sufficiently captured the phenological differences between the classes and produced the best results, with SVM (74%) and NN (72%) classifiers returning statistically superior results compared to RF (65%) and CT (50%). The SWIR spectral bands captured during spring, the greenness indices captured during spring and the tasselled cap transformations derived from the autumn image emerged as most informative, which suggests that ecological factors (e.g. shared species, patch dynamics) occurring at a sub-pixel level likely had the biggest impact on class confusion. However, despite these challenges, the results are auspicious and suggest that seasonal Sentinel-2 imagery has the potential to predict compositional vegetation classes with high accuracy. Further work is needed to determine whether these results are replicable in other vegetation types and regions.     

Testing the capability of spectral resolution of the new multispectral sensors on detecting the severity of grey leaf spot disease in maize crop

Abstract

In this study, we tested whether GLS field symptoms on maize can be detected using hyperspectral data re-sampled to WorldView-2, Quickbird, RapidEye and Sentinel-2 resolutions. To achieve this objective, Random Forest algorithm was used to classify the 2013 re-sampled spectra to represent the three identified disease severity categories. Results showed that Sentinel-2, with 13 spectral bands, achieved the highest overall accuracy and kappa value of 84% and 0.76, respectively, while the WorldView-2, with eight spectral bands, yielded the second highest overall accuracy and kappa value of 82% and 0.73, respectively. Results also showed that the 705 and 710 nm red edge bands were the most valuable in detecting the GLS for Sentinel-2 and RapidEye, respectively. On the re-sampled WorldView 2 and Quickbird sensor resolutions, the respective 608 and 660 nm in the yellow and red bands were identified as the most valuable for discriminating all categories of infection.     

Characterizing spring phenology of temperate broadleaf forests using Landsat and Sentinel-2 time series

Vegetation phenology has a great impact on land-atmosphere interactions like carbon cycling, albedo, and water and energy exchanges. To understand and predict these critical land-atmosphere feedbacks, it is crucial to measure and quantify phenological responses to climate variability, and ultimately climate change. Coarse-resolution sensors such as MODIS and AVHRR have been useful to study vegetation phenology from regional to global scales. These sensors are, however, not capable of discerning phenological variation at moderate spatial scales. By offering increased observation density and higher spatial resolution, the combination of Landsat and Sentinel-2 time series might provide the opportunity to overcome this limitation.In this study, we analyzed the potential of combined Sentinel-2 and Landsat time series for estimating start of season (SOS) of broadleaf forests across Germany for the year 2018. We tested two common statistical modeling approaches (logistic and generalized additive models using thin plate splines) and the two most commonly used vegetation indices, the Normalized Difference Vegetation Index (NDVI) and the Enhanced Vegetation Index (EVI).We found strong agreement between SOS estimates from logistic and spline models (r_EVI = 0.86; r_NDVI = 0.65), whereas agreement was higher for EVI than for NDVI (RMSD_EVI = 3.07, RMSD_NDVI = 5.26 days). The choice of vegetation index thus had a higher impact on the results than the fitting method. The EVI-based SOS also showed higher correlation with ground observations compared to NDVI (r_EVI = 0.51, r_NDVI = 0.42). Data density played an important role in estimating land surface phenology. Models combining Sentinel-2A/B, with an average cloud-free observation frequency of 12 days, were largely consistent with the combined Landsat and Sentinel-2 models, suggesting that Sentinel-2A/B may be sufficient to capture SOS for most areas in Germany in 2018. However, in non-overlapping swath areas and mountain areas, observation frequency was significantly lower, underlining the need to combine Landsat and Sentinel-2 for consistent SOS estimates over large areas. Our study demonstrates that estimating SOS of temperate broadleaf forests at medium spatial resolution has become feasible with combined Landsat and Sentinel-2 time series.     

利用Sentinel-2影像超分辨率重建的红树林冠层氮含量反演

氮素是植被整个生命周期的必要元素,红树林冠层氮素含量（CNC）遥感估算对红树林健康监测具有重要意义。以广东湛江高桥红树林保护区为研究区,本文旨在基于Sentinel-2影像超分辨率重建技术进行红树林CNC估算和空间制图。研究首先基于三次卷积重采样、Sen2Res和SupReMe算法实现Sentinel-2影像从20 m分辨率到10 m的重建;然后以重建后的影像和原始20 m影像为数据源构建40个相关植被指数,采用递归特征消除法（SVM-RFE）确定CNC估算的最优变量组合,进而构建CNC反演的核岭回归（KRR）模型;最后选取最优模型实现CNC制图。研究结果表明：基于Sen2Res和SupReMe超分辨率算法的重建影像不仅与原始影像具有很高的光谱一致性,且明显提高了影像的清晰度和空间细节。红树林CNC反演波段主要集中在红（B4）、红边（B5）、近红外波段（B8a）以及短波红外波段（B11和B12）,与“红边波段”相关的植被指数（RSSI和TCARIre1/OSAVI）也是红树林CNC反演的有效变量。基于3种方法重建后10 m的影像构建的模型反演精度（R²val>0.579）均优于原始20 m的影像（R²val=0.504）;基于Sen2Res算法重建影像构建的反演模型拟合精度（R²val=0.630,RMSE_val=5.133,RE_val=0.179）与基于三次卷积重采样重建影像的模型拟合精度（R²val=0.640,RMSE_val=5.064,RE_val=0.179）基本相当,前者模型验证精度（R²cv=0.497,RMSE_cv=5.985,RE_cv=0.214）较高且模型变量选择数量最为合理。综合重建影像光谱细节及模型精度,基于Sen2Res算法重建的Sentinel-2影像在红树林CNC估算中具有良好的应用潜力,能为区域尺度红树林冠层健康状况的精细监测提供有效的方法借鉴和数据支撑。     

Vegetation species mapping in a coastal-dune ecosystem using high resolution satellite imagery

Vegetation mapping is a priority when managing natural protected areas. In this context, very high resolution satellite remote sensing data can be fundamental in providing accurate vegetation cartography at species level. In this work, a complete processing methodology has been developed and validated in a complex vulnerable coastal-dune ecosystem. Specifically, the analysis has been carried out using WorldView-2 imagery, which offers spatial and spectral resolutions. A thorough assessment of 5 atmospheric correction models has been performed using real reflectance measures from a field radiometry campaign. To select the classification methodology, different strategies have been evaluated, including additional spectral (23 vegetation indices) and spatial (4 texture parameters) information to the multispectral bands. Likewise, the application of linear unmixing techniques has been tested and abundance maps of each plant species have been generated using the library of spectral signatures recorded during the campaign. After the analysis conducted, a new methodology has been proposed based on the use of the 6S atmospheric model and the Support Vector Machine classification algorithm applied to a combination of different spectral and spatial input data. Specifically, an overall accuracy of 88,03% was achieved combining the corrected multispectral bands plus a vegetation index (MSAVI2) and texture information (variance of the first principal component). Furthermore, the methodology has been validated by photointerpretation and 3 plant species achieve significant accuracy: Tamarix canariensis (94,9%), Juncus acutus (85,7%) and Launaea arborescens (62,4%). Finally, the classified procedure comparing maps for different seasons has also shown robustness to changes in the phenological state of the vegetation.     

Spectral detection of stress-related pigments in salt-lake succulent halophytic shrubs

The spectral detection of vegetation pigment concentrations has a high potential value, but it is still underdeveloped, especially for pigments other than chlorophylls. In this study, the seasonal pigment dynamics of two Tecticornia species (samphires; halophytic shrubs) from north-western Australia were correlated with spectral indices that best document the pigment changes over time. Pigment dynamics were assessed by analysing betacyanin, chlorophyll and carotenoid concentrations at plant level and by measuring reflectance at contrasting seasonal dates. Plant reflectance was used to define a new reflectance index that was most sensitive to the seasonal shifts in Tecticornia pigment concentrations. The two Tecticornia species turned from green to red-pinkish for the period March–August 2012 when betacyanins increased almost nine times in both species. Chlorophyll levels showed the opposite pattern to that of betacyanins, whereas carotenoid levels were relatively stable. Normalised difference indices correlated well with betacyanin (r = 0.805, using bands at 600 and 620 nm) and chlorophyll (r = 0.809, using bands at 737 and 726 nm). Using knowledge of chlorophyll concentrations slightly improved the ability of the spectral index to predict betacyanin concentration (r = 0.822 at bands 606 and 620 nm, in the case of chemically determined chlorophyll, r = 0.809 when using remotely sensed chlorophyll). Our results suggest that this new spectral index can reliably detect changes in betacyanin concentrations in vegetation, with potential applications in ecological studies and environmental impact monitoring.     

Remote estimation of nitrogen and chlorophyll contents in maize at leaf and canopy levels

Leaf and canopy nitrogen (N) status relates strongly to leaf and canopy chlorophyll (Chl) content. Remote sensing is a tool that has the potential to assess N content at leaf, plant, field, regional and global scales. In this study, remote sensing techniques were applied to estimate N and Chl contents of irrigated maize (Zea mays L.) fertilized at five N rates. Leaf N and Chl contents were determined using the red-edge chlorophyll index with R² of 0.74 and 0.94, respectively. Results showed that at the canopy level, Chl and N contents can be accurately retrieved using green and red-edge Chl indices using near infrared (780–800 nm) and either green (540–560 nm) or red-edge (730–750 nm) spectral bands. Spectral bands that were found optimal for Chl and N estimations coincide well with the red-edge band of the MSI sensor onboard the near future Sentinel-2 satellite. The coefficient of determination for the relationships between the red-edge chlorophyll index, simulated in Sentinel-2 bands, and Chl and N content was 0.90 and 0.87, respectively.     

Sentinel-2 red-edge spectral indices (RESI) suitability for mapping rubber boom in Luang Namtha Province,northern Lao PDR

Rubber (Hevea brasiliensis) tree cultivation is being continuously expanded northward by replacing evergreen forests and swidden-related regenerated vegetation across the uplands of mainland Southeast Asia (MSEA), e.g., Laos, a landlocked mountainous country. The non-native tree establishment in the northern tropical edge, or the non-traditional suitable planting area, provides stable supplies of natural latex, yet also leads to severe ecological degradation and environmental effects in water conservation, soil quality, rainforest fragmentation and biodiversity. Rubber plantations in the northern part of MSEA are normally characterized by periodic deciduous during the dry season, along with a lengthy defoliation-foliation duration, because of seasonal variations in temperature and precipitation. It thus lays a phenological and physiological base for dynamics monitoring with common multispectral (e.g., near-infrared and short-wave infrared bands) satellites, particularly Landsat. However, whether Sentinel-2 red-edge based algorithms are suitable for discriminating rubber plantations is not yet exclusively reported. Here, we developed a red-edge spectral indices (RESI) method through the normalization of three red-edge bands and applied it to identify and map rubber plantations in Luang Namtha Province of northern Laos, where a rubber boom begun in the mid-2000s. The RESI algorithm highlights the sensitivity of red-edge bands to the changes in moisture content and canopy density of rubber plantations. The area of mature rubber plantations was estimated to be 771.2 km² in this province bordering southwest China in 2018, which was nearly twice as much as that of 2011, with the overall accuracy and kappa coefficient up to 92.50% and 0.91, respectively. Our phenology-based RESI approach not only indicates that Sentinel-2 imagery holds significant potential for monitoring rubber plantations, but also improves the remotely-sensed methods of rubber boom mapping via introducing the red-edge channel.     

Using a stochastic gradient boosting algorithm to analyse the effectiveness of Landsat 8 data for montado land cover mapping: Application in southern Portugal

This study aims to develop and propose a methodological approach for montado ecosystem mapping using Landsat 8 multi-spectral data, vegetation indices, and the Stochastic Gradient Boosting (SGB) algorithm. Two Landsat 8 scenes (images from spring and summer 2014) of the same area in southern Portugal were acquired. Six vegetation indices were calculated for each scene: the Enhanced Vegetation Index (EVI), the Short-Wave Infrared Ratio (SWIR32), the Carotenoid Reflectance Index 1 (CRI1), the Green Chlorophyll Index (CI_green), the Normalised Multi-band Drought Index (NMDI), and the Soil-Adjusted Total Vegetation Index (SATVI). Based on this information, two datasets were prepared: (i) Dataset I only included multi-temporal Landsat 8 spectral bands (LS8), and (ii) Dataset II included the same information as Dataset I plus vegetation indices (LS8 + VIs). The integration of the vegetation indices into the classification scheme resulted in a significant improvement in the accuracy of Dataset II’s classifications when compared to Dataset I (McNemar test: Z-value = 4.50), leading to a difference of 4.90% in overall accuracy and 0.06 in the Kappa value. For the montado ecosystem, adding vegetation indices in the classification process showed a relevant increment in producer and user accuracies of 3.64% and 6.26%, respectively. By using the variable importance function from the SGB algorithm, it was found that the six most prominent variables (from a total of 24 tested variables) were the following: EVI_summer; CRI1_spring; SWIR32_spring; B6_summer; B5_summer; and CI_green_summer.     

Evaluating techniques for mapping island vegetation from unmanned aerial vehicle (UAV) images: Pixel classification,visual interpretation and machine learning approaches

We evaluate three approaches to mapping vegetation using images collected by an unmanned aerial vehicle (UAV) to monitor rehabilitation activities in the Five Islands Nature Reserve, Wollongong (Australia). Between April 2017 and July 2018, four aerial surveys of Big Island were undertaken to map changes to island vegetation following helicopter herbicide sprays to eradicate weeds, including the creeper Coastal Morning Glory (Ipomoea cairica) and Kikuyu Grass (Cenchrus clandestinus). The spraying was followed by a large scale planting campaign to introduce native plants, such as tussocks of Spiny-headed Mat-rush (Lomandra longifolia). Three approaches to mapping vegetation were evaluated, including: (i) a pixel-based image classification algorithm applied to the composite spectral wavebands of the images collected, (ii) manual digitisation of vegetation directly from images based on visual interpretation, and (iii) the application of a machine learning algorithm, LeNet, based on a deep learning convolutional neural network (CNN) for detecting planted Lomandra tussocks. The uncertainty of each approach was assessed via comparison against an independently collected field dataset. Each of the vegetation mapping approaches had a comparable accuracy; for a selected weed management and planting area, the overall accuracies were 82 %, 91 % and 85 % respectively for the pixel based image classification, the visual interpretation / digitisation and the CNN machine learning algorithm. At the scale of the whole island, statistically significant differences in the performance of the three approaches to mapping Lomandra plants were detected via ANOVA. The manual digitisation took a longer time to perform than others. The three approaches resulted in markedly different vegetation maps characterised by different digital data formats, which offered fundamentally different types of information on vegetation character. We draw attention to the need to consider how different digital map products will be used for vegetation management (e.g. monitoring the health individual species or a broader profile of the community). Where individual plants are to be monitored over time, a feature-based approach that represents plants as vector points is appropriate. The CNN approach emerged as a promising technique in this regard as it leveraged spatial information from the UAV images within the architecture of the learning framework by enforcing a local connectivity pattern between neurons of adjacent layers to incorporate the spatial relationships between features that comprised the shape of the Lomandra tussocks detected.