Dynamics of diesel fuel degradation in contaminated soil using organic wastes

Bioremediation is an effective measure in dealing with such contamination, particularly those from petroleum hydrocarbon sources. The effect of soil amendments on diesel fuel degradation in soil was studied. Diesel fuel was introduced into the soil at the concentration of 5 % (w/w) and mixed with three different organic wastes tea leaf, soy cake, and potato skin, for a period of 3 months. Within 84 days, 35 % oil loss was recorded in the unamended polluted soil while 88, 81 and 75 % oil loss were recorded in the soil amended with soy cake, potato skin and tea leaf, respectively. Diesel fuel utilizing bacteria counts were significantly high in all organic wastes amended treatments, ranging from 111 × 106 to 152 × 106 colony forming unit/gram of soil, as compared to the unamended control soil which gave 31 × 106 CFU/g. The diesel fuel utilizing bacteria isolated from the oil-contaminated soil belongs to Bacillus licheniformis, Ochrobactrum tritici and Staphylococcus sp. Oil-polluted soil amended with soy cake recorded the highest oil biodegradation with a net loss of 53 %, as compared to the other treatments. Dehydrogenase enzyme activity, which was assessed by 2,3,5-triphenyltetrazolium chloride technique, correlated significantly with the total petroleum hydrocarbons degradation and accumulation of CO₂. First-order kinetic model revealed that soy cake was the best of the three organic wastes used, with biodegradation rate constant of 0.148 day^?1 and half life of 4.68 days. The results showed there is potential for soy cake, potato skin and tea leaf to enhance biodegradation of diesel in oil-contaminated soil.     

Population structures shift during the biodegradation of crude and fuel oil by an indigenous consortium

Petroleum and fuel oil are complex mixtures of recalcitrant hydrocarbons. The biodegradation of these hydrocarbons needs the action of a vast variety of enzymatic capacities. A microbial consortium offers the capability to degrade complex substrates through the assembly of different biochemical reactions, providing a metabolic versatility superior to axenic cultures. In this work, the microbial population dynamics, taxonomy, and the catabolic capacity of a stabilized consortium exposed to fuel and crude oil was analyzed through metagenomics. The stabilized consortium degraded 59% of crude oil components after 8 days, and 34% of fuel oil components after 130 days. Population dynamics analysis indicates that in fuel oil the biodiversity richness was higher; however, denaturing gradient gel electrophoresis similarity dendrogram shows significant changes in the microbial population during crude oil degradation. Taxonomy studies indicate a great genera divergence; only eight microbial genera were common in both samples. In crude oil, the Limnobacter sp. was the most abundant specie (15.6%), while Sphingomonas wittichii (7.9%) and Novosphingobium aromaticivorans (7.6%) were abundant in fuel oil. These microorganisms have been reported to participate in the degradation of aliphatic and aromatic hydrocarbons. Functional analysis suggests that fuel and crude oil components changed the interactions between the consortium members affecting the collective metabolic functionality.     

Experimental Study on Micro-biological Degradation of 1, 3, 5- TMB in Groundwater

1, 3, 5-TMB (trimethylbenzene) has been considered as priority pollutant by several environmental agencies due to its high toxicity, carcinogenicity and mutagenic activity. Two bacteria with ability of degrading 1, 3, 5- TMB were isolated from crude oil contaminated soil. The optimal pH value and temperature for the growth of these bacteria were 7.0 and 30℃. 1, 3, 5- TMB was used as sole carbon and energy source by both strains. Strain A was identified as Staphylococcus sciuri and Strain C was Microbacterium schleiferi, both of which were facultative anaerobic bacteria. 1, 3, 5-TMB was degraded by strain C with efficiency of 41.2±1.8%. The bacteria offered new source for biodegradation of BTEX and bioremediation of oil-contaminated soil and groundwater.     

Kinetics of biodegradation of diesel fuel by enriched microbial consortia from polluted soils

Three microbial consortia were isolated from three polluted soils located at an oil refinery and acclimated to grow on diesel fuel as the sole carbon source. Batch experiments were then conducted with the three consortia to study the kinetics of diesel biodegradation. The effects of temperature (25, 30 and 35?°C) and diesel concentration (0.5, 1 and 3?%) on the biodegradation of diesel were analysed. Several species were identified in the acclimated microbial consortia, and some of them appeared in more than one consortium. Thermal inhibition was observed at 35?°C. In the rest of experiments, over 80?% of the substrate was degraded after 40?h of treatment. These results proved the good feasibility of using the polluted sites as sources of mixed consortia for hydrocarbon degradation. However, diesel degradation efficiencies and rates were very similar, suggesting that the acclimation process produced mixed consortia with very similar characteristics; in this context, origin of the soil sample was not a decisive factor. A simple Monod-type kinetic model was used to simulate the biodegradation process, and accurate results were obtained. The ?? _max values were between 0.17 and 0.34?h^?1. The results of this study revealed that the consortia can function at high concentrations of hydrocarbons without any sign of growth inhibition, which is important for the design of bioreactors for wastewater treatment with high concentrations of fuel.     

Co-contamination of water with chlorinated hydrocarbons and heavy metals: challenges and current bioremediation strategies

Chlorinated hydrocarbons can cause serious environmental and human health problems as a result of their bioaccumulation, persistence and toxicity. Improper disposal practices or accidental spills of these compounds have made them common contaminants of soil and groundwater. Bioremediation is a promising technology for remediation of sites contaminated with chlorinated hydrocarbons. However, sites co-contaminated with heavy metal pollutants can be a problem since heavy metals can adversely affect potentially important biodegradation processes of the microorganisms. These effects include extended acclimation periods, reduced biodegradation rates, and failure of target compound biodegradation. Remediation of sites co-contaminated with chlorinated organic compounds and toxic metals is challenging, as the two components often must be treated differently. Recent approaches to increasing biodegradation of organic compounds in the presence of heavy metals include the use of dual bioaugmentation; involving the utilization of heavy metal-resistant bacteria in conjunction with an organic-degrading bacterium. The use of zero-valent irons as a novel reductant, cyclodextrin as a complexing agent, renewable agricultural biosorbents as adsorbents, biosurfactants that act as chelators of the co-contaminants and phytoremediation approaches that utilize plants for the remediation of organic and inorganic compounds have also been reported. This review provides an overview of the problems associated with co-contamination of sites with chlorinated organics and heavy metals, the current strategies being employed to remediate such sites and the challenges involved.     

Ability of indigenous Bacillus licheniformis and Bacillus subtilis in microbial enhanced oil recovery

Microbially produced lipopeptide have been isolated and studied for microbial enhanced oil recovery. About 60 gram positive bacteria isolated from soil contaminated with crude oil, near the crude oil storage tank in Tehran Refinery, Tehran, Iran. However, most of these studies have produced lipopeptide by one of the pure-culture microbes isolated in a laboratory. Among the isolates, heamolytic tests revealed two biosurfactant producers. The isolated strains were designated as C2, E1. By using morphological, biochemical and molecular biology tests (16 SrRNA), the strains identified as Bacillus licheniformis and Bacillus subtitlis, respectively. Emulsification activity and measurement of surface tension indicated that, the isolates were high producers of biosurfactant. The product of C2 and E1 is mainly lipopeptide. This product reduce surface tension from 65 to 30 mN/m. Emulsified activity of crude oil was 92% for C2 and 90 % in case of E1. This is the first report of indigenous Bacillus licheniformis and Bacillus subtilis from a soil contaminated with oil in an Iranian refinery with ability to produce biosurfactant.     

Isolation,biodegradation ability and molecular detection of hydrocarbon degrading bacteria in petroleum samples from a Brazilian offshore basin

The detection of microorganisms with potential for biodeterioration and biodegradation in petroleum fields is of great relevance, since these organisms may be related to a decrease in petroleum quality in the reservoirs or damage in the production facilities. In this sense, petroleum formation water and oil samples were collected from the Campos Basin, Brazil, with the aim of isolating microorganisms and evaluating their ability to degrade distinct classes of hydrocarbon biomarkers (9,10-dihydrophenanthrene, phytane, nonadecanoic acid and 5α-cholestane). Twenty eight bacterial isolates were recovered and identified by sequencing their 16S rRNA genes. Biodegradation assays revealed that bacterial metabolism of hydrocarbons occurred through reactions based on oxidation, carbon–carbon bond cleavage and generation of new bonds or by the physical incorporation of hydrocarbons into microbial cell walls. Based on the biodegradation results, selective PCR-based systems were developed for direct detection in petroleum samples of bacterial groups of interest, namely Bacillus spp., Micrococcus spp., Achromobacter xylosoxidans, Dietzia spp. and Bacillus pumilus. Primer sets targeting 16S rRNA genes were designed and their specificity was confirmed in silico (i.e. computational analysis) and in PCR reactions using DNA from reference strains as positive and negative controls. Total DNA from oil was purified and the amplification tests revealed the presence of the target bacteria in the samples, unraveling a significant potential for petroleum deterioration in the reservoirs sampled, once proper conditions are present for hydrocarbon degradation. The application of molecular methods for rapid detection of specific microorganisms in environmental samples would be valuable as a supporting tool for the evaluation of oil quality in production reservoirs.     

Surfactant-enhanced remediation of contaminated soil: a review

Extracting aqueous solutions with or without additives are employed to solubilize contaminants in soil. Since water solubility is the controlling removing mechanism, additives are used to enhance efficiencies. These additives can reduce the time to treat a site compared to the use of water alone. Additives must be of low toxicity and biodegradable. The research in this area has focussed mainly on halogenated volatile organic compounds (VOCs) and is still quite limited for metal removal. Additives include surfactants, organic and inorganic acids, sodium hydroxide, which can dissolve organic soil matter, water-soluble solvents such as methanol, displacement of cations with nontoxic ones, complexing agents such as EDTA, acids in combination with complexing agents or oxidizing/reducing agents. Cationic, anionic and nonionic surfactants are particularly used for soil washing or flushing. They contain both hydrophobic and hydrophilic portions, making them ideal for solubilization of hydrophobic compounds. Numerous studies have indicated that surfactants enhance recoveries of non-aqueous phase liquids (NAPLs). There have also been indications that pretreatment of soil with surfactant washing to solubilize hydrophobic compounds such as PAHs enhances biodegradation of these contaminants. A few in situ field studies have been performed with surfactants. Large-scale treatment has been done mostly for organic removal. Soil pH, soil type, cation exchange capacity (CEC), particle size, permeabilities and contaminants all affect removal efficiencies. High clay and organic matter contents are particularly detrimental. Understanding the chemistry of the binding of the contaminant and the hydrogeology of the site are very important. Once the water is pumped from the soil, it must be extracted and then treated to remove the hydrocarbons and metals. Several technologies exist such as sodium hydroxide or sodium sulfide precipitation, ion exchange, activated carbon adsorption, ultrafiltration, reverse osmosis, electrodialysis and biological processes. Recycling of the surfactants is desired to decrease treatment costs.

This paper will provide an overview of the laboratory research, field demonstration and full-scale application of surfactants for the remediation of contaminated soil. The majority of pilot scale in situ flushing tests, particularly in the United States, have involved the use of surfactants and co-solvents. There are only a few full-scale projects however. Recent laboratory scale efforts by the authors concerning the use of biosurfactants, biologically produced surfactants, to enhance the removal of copper, cadmium and zinc from contaminated soils and sediments are discussed. Three types of biosurfactants were evaluated for their effectiveness. They included a lipopeptide called surfactin from Bacillus subtilis, a rhamnolipid from Pseudomonas aeruginosa and a sophorolipid from Torulopsis bombicola. The results indicated the feasibility of removing the metals with the anionic biosurfactants even though the exchangeable fractions were not significant.     

Bacterial biosurfactants can be an ecofriendly and advanced technology for remediation of heavy metals and co-contaminated soil

Environmental pollution due to heavy metals has become a significant drawback as a result of their ecotoxicity. Hence, their remediation is of pressing concern. Many technologies are planned for their remediation; however, most of them are highly expensive and result in incomplete removal of contaminants. So, massive attention has paid to the event and application of the latest biologically techniques, that is effective in remedy and cost, not harming the prevailing surroundings. Hence, application of biosurfactant in heavy metal remediation is one among the recent ecofriendly technique. The present review critically highlights bacterial biosurfactants as a best alternative technique for heavy metals remediation. The review also emphasizes that bacterial biosurfactants can open up a new vista in remediation of metal-contaminated soil.     

Biodegradation of polycyclic aromatic hydrocarbon by a halotolerant bacterial consortium isolated from marine environment

The biodegradability of polycyclic aromatic hydrocarbons such as naphthalene, fluorene, anthracene and phenanthrene by a halotolerant bacterial consortium isolated from marine environment was investigated. The polycyclic aromatic hydrocarbons degrading bacterial consortium was enriched from mixture saline water samples collected from Chennai (Port of Chennai, salt pan), India. The consortium potently degraded polycyclic aromatic hydrocarbons (> 95%) at 30g/L of sodium chloride concentration in 4 days. The consortium was able to degrade 39 to 45% of different polycyclic hydrocarbons at 60 g/L NaCl concentration. Due to increase in salinity, the percent degradation decreased. To enhance polycyclic aromatic hydrocarbons degradation, yeast extract was added as an additional substrate at 60g/L NaCl concentration. After the addition of yeast extract, the consortium degraded > 74 % of polycyclic aromatic hydrocarbons at 60 g/L NaCl concentration in 4 days. The consortium was also able to degrade PAHs at different concentrations (5, 10, 20, 50 and 100 ppm) with 30 g/L of NaCl concentration. The polycyclic aromatic hydrocarbons degrading halotolerant bacterial consortium consists of three bacterial strains, namely Ochrobactrum sp., Enterobacter cloacae and Stenotrophomonas maltophilia.     

污染土壤石油生物降解与调控效应研究

为考察修复过程中土壤石油降解效应,选用中国北方某油田区现场的原油污染土壤,进行了投加除油菌、调节氮磷营养含量和水分含量等强化措施的修复试验。经过180d修复,结果表明,土壤石油污染物去除率达70·6%,去除速率达0·15g·kg-1·d-1,与自然条件相比,石油污染物半衰期由929d减少为103d。饱和烃去除率占总石油去除的75%以上,主要为十八烷、二十七烷、二十九烷、三十一烷与三十四烷。初期投菌对石油污染土壤的生物修复具有快速启动作用,但后期多次投菌对生物修复的促进作用不明显。对氮磷营养水平的适当调节有利于生物修复进行,本试验中对除油菌生长和石油去除最有利的有效态碳氮比为C∶N=100∶1~50∶1。在石油去除过程中,土壤石油去除速率的变化与除油菌数量变化趋势基本一致,表明微生态环境调控对于污染土壤中的石油降解具有显著的促进作用。     

Atmospheric pressure dielectric barrier discharge for the remediation of soil contaminated by organic pollutants

The remediation of soil, contaminated by organic pollutants, in a cylinder-to-plane dielectric barrier discharge reactor at atmospheric air pressure was reported. Two model organic pollutants were selected; a solid pollutant (2,6-dichloropyridine) and a liquid pollutant (n-dodecane). The effects of the contaminant’s initial concentration and state, the energy consumption, and the soil type on the pollutant removal efficiency were investigated. To that scope, various contaminated samples of both quartz sand and loamy sandy soil were treated by plasma for various treatment times and initial 2,6-dichloropyridine/n-dodecane concentrations. The results revealed that (1) the removal efficiency of 2,6-dichloropyridine was higher compared to that of n-dodecane at a given plasma treatment time and (2) the removal efficiency increased with the energy density increasing, but decreased as the soil heterogeneity, organic matter and pollutant concentration were enhanced. The main removal mechanism proposed is the evaporation of pollutant molecules coupled with their oxidation by plasma species in the gas and solid/liquid phase.     

Production of biosurfactant from Iranian oil fields by isolated Bacilli

Crude oil and water samples were collected from selected Iranian oil reservoirs. Experimental works were carried out in laboratory conditions. The samples have been grown on PYG medium and incubated at 30–80 °C. Thirty-six mesophile and thermophile bacterial strains have been isolated. All the isolates were able to grow at aerobic condition. Batch growth kinetic studies were carried out in a 500 ml. shake flask. Out of 36 isolated strains from 24 crude oil and water samples, 35 strains were gram positive rod. Shaped spore forming bacteria and one strain was coccid form. Eight out to 35 bacillus species were capable of producing surfactant. Production of biosurfactant was found to be cell growth associated. The ability of surfactant producing bacteria indicated by reduction of surface tension (ST) and interfacial tension (IFT) of the supernatant. Eight strains obtained the IFT reduction in crude oil, hexadecane, sucrose, glucose, fructose and mannose medium as a sole source of carbon and energy at 40 °C by 15–30 mN/m. Results showed that all the bacteria are producing more surfactant when glucose is the carbon source. Further screening of biosurfactant producer showed that three of the isolated strains resulted the maximum ST and IFT. Effect of temperature on these three isolates investigated at 30–80 °C, above 50 °C surfactant production was dramatically reduced. The isolated strains had the capacity to produce the surfactant at 3–5% NaCl a wide rang of pH (6.5–8.5).     

Characterization of a biodegrading bacterium, <Emphasis Type="Italic">Bacillus subtilis</Emphasis>, isolated from oil-contaminated soil

Crude oil and its derivatives because of different events and accidents may cause pollution to the environment. A biological treatment is a novel technique that uses microorganisms to remove or neutralize pollutants from a contaminated site. Oil-contaminated soils were sampled, after isolating of soil bacteria, using quantitative and qualitative screening, biosurfactant-producing bacteria were identified and environmental factors on the growth of bacteria and biosurfactant were investigated. In this study, the Bacillus subtilis was identified as the best biosurfactant-producing strain which has the ability to grow in environments with high salinity and temperature and pH > 5. The produced biosurfactant from B. subtilis is stable to changes in temperature and salt concentration and pH (in the range of 5–12).The B. subtilis also showed that they are able to biodegrade aliphatic alkanes. The B. subtilis has necessary potential for bioremediation of oil pollution in the environment.     

Treatment of diesel-polluted clay soil employing combined biostimulation in microcosms

The efficiency of inorganic fertilizers as stimulating agents for the bioremediation of oil-polluted environments can be increased with the addition of selected biostimulating compounds. In this study, the efficacy of different biostimulation treatments in the remediation of diesel-polluted soil in purpose-built microcosms has been evaluated. The treatments involved combinations of inorganic fertilizer with (a) Ivey surfactant, (b) Biorem organic fertilizer and (c) ethanol. Microbial activity was evaluated by monitoring the growth of heterotrophic and degrading bacteria and their dehydrogenase activity and carbon dioxide production. Hydrocarbon degradation was monitored by gas chromatography/mass spectrometry. The results showed that all treatments enhanced microbial activity in comparison with natural attenuation and also that the combined treatments generally enhanced hydrocarbon biodegradation in comparison to both natural attenuation and the single inorganic fertilizer treatment. The inorganic fertilizer plus Ivey^? surfactant was the most efficient treatment in terms of Total Petroleum Hydrocarbon and light and heavy n-alkanes, showing an index of degradation of 1.4 and 1.3, respectively. Furthermore, biodegradation of heavy and branched n-alkanes was higher in microcosms treated with inorganic fertilizer plus ethanol (Index of degradation values of 1.6 and 1.5, respectively) indicating that combined treatments can be very effective in restoration of contaminated soil.     

Isolation of <Emphasis Type="Italic">Bacillus cereus</Emphasis> from botanical soil and subsequent biodegradation of waste engine oil

Waste engine oil causes a vital environmental pollution when it spill during change and transportation and products of waste engine oil causes lethal effects to the living systems. Thus, abiotic and biotic approaches are being extensively used for removal of waste engine oil pollution. Therefore in present study, waste engine oil degradation was accomplished by a new bacterial culture, isolated from the soil by an enrichment technique. Morphological, biochemical and gene sequence analysis revealed that isolate was Bacillus cereus. Subsequently, biodegradation potential of B. cereus for waste engine oil was studied. Experimental variables, such as pH, substrate concentration, inoculum size, temperature and time on the biodegradation, were checked in mineral salt medium. The biodegradation efficiency of B. cereus was determined by gravimetry, UV–visible spectrophotometry and gas chromatography. In addition, waste engine oil was also characterized by GC–MS and FTIR for its major constituents, which showed total 38 components in waste engine oil, including hopanes, benzopyrene, long-chain aliphatic hydrocarbons, dibenzothiophenes, biphenyl and their derivatives. Results of successive biodegradation indicated that B. cereus was capable to degrade 1% of waste engine oil with 98.6% degradation potential at pH 7 within 20 days. Hence, B. cereus presents an innovative tool for removing the engine oil from the contaminated area.     

Bioremediation of crude oil by <Emphasis Type="Italic">Bacillus licheniformis</Emphasis> in the presence of different concentration nanoparticles and produced biosurfactant

This research work focuses on testing the bacterial strain Bacillus licheniformis for the bioremediation capacity of the crude oil. A biosurfactant and two different nanoparticles with different concentrations (0.05, 0.1, 0.2 g/100 ml) were applied separately to enhance the biodegradation process. The optimum biodegradation of crude oil was demonstrated at 60% of microcosms containing biosurfactant and nanoparticles after 7 days. The bacterial strain is highly potential to consume the total paraffins (iso- and n-paraffins) in crude oil samples. Accordingly, the best biodegradation of total paraffins was observed in microcosms containing (0.2 g) of Fe₂O₃, Zn₅(OH)₈Cl₂ (nps) and biosurfactant separately. Additionally, the consumption of specific member rings of polyaromatics depends on the type and the concentration of nanoparticles. Thus, this bacterial strain was considered as a good candidate to be applied in the bioremediation process of petroleum-contaminated sites using biosurfactant and specific concentration of (Fe₂O₃ and Zn₅OH₈Cl₂) nanoparticles.     

Bacterial consortium and axenic cultures isolated from activated sewage sludge for biodegradation of imidazolium-based ionic liquid

Extensive research and increasing number of potential industrial applications made ionic liquids (ILs) important materials in design of new, cleaner technologies. Together with the technological applicability, the environmental fate of these chemicals is considered and significant efforts are being made in designing strategies to mitigate their potential negative impacts. Many ILs are proven to be poorly biodegradable and relatively toxic. Bioaugmentation is known as one of the ways of enhancing the microbial capacity to degrade xenobiotics by addition of specialized strains. The aim of current work was to select microbial species that could be used for bioaugmentation in order to enhance biodegradation of ILs in the environment. We subjected activated sewage sludge to the selective pressure of 1-methyl-3-octylimidazolium chloride ([OMIM][Cl]) and isolated nine strains of bacteria which were able to prevail in these conditions. Subsequently, we utilized axenic cultures (pure cultures) of these bacteria as well as mixed consortium to degrade this IL. In addition, we performed growth inhibition tests and found that bacteria were able to grow in 2 mM, but not in 20 mM solutions of [OMIM][Cl]. The biodegradation conducted by the isolated consortium was higher than conducted by the activated sewage sludge when normalized by the cell density, which indicates that the isolated strains seem specifically suited to degrade the IL.     

Bioemulsification activity assessment of an indigenous strain of halotolerant Planococcus and partial characterization of produced biosurfactants

Halotolerant bacteria are regarded as effective oil-scavengers in the polluted saltern and seawater. In this regard, a halotolerant Planococcus was isolated from oil-contaminated area of Dezful north springs, Iran, due to its capacity in biosurfactant (BS) production. To facilitate hydrocarbons degradation, in the current study, the efficiency of BS production as function of growth rate of the halotolerant Planococcus was investigated in the vicinity of heavy crude oil by emulsification index (E24). Subsequently, the BS characterization was made by thin-layer chromatography (TLC), gas chromatography (GC) and infrared spectra analysis, and the stability was determined by E24 value measurement over a certain pH (5–9), temperature (20–100 °C) and salt concentration (0–10 % w/v) ranges. The BS production was found to be growth-associated. Detection of a unique band on TLC and GC chromatogram showed the extensive refining capacity of the BS purification, using the medium supernatant under acetone alkaline precipitation followed by oil dissolution from the sediment by carbon tetrachloride. Accordingly, it was clarified that the BS ultimately accumulated outside the cells. The glycolipid quality of the BS was further determined by the routine chemical characterization on TLC and by IR spectra analysis. Moreover, there was no protein detected by lowery total protein assay. Finally, the optimal temperature, pH and NaCl concentration to reach highest E24 values (85.7, 77.0, and 79.0 %) were found at respective 40 °C, pH = 9 and 0 % w/v. Our results revealed the practically potential of strain Dezful Isolate for BS large-scale production as environmentally friendly oil-eliminating agents.     

Synergistic degradation of diazo dye Direct Red 5B by Portulaca grandiflora and Pseudomonas putida

Plants and bacterial consortium of Portulaca grandiflora and Pseudomonas putida showed complete decolorization of a sulfonated diazo dye Direct Red 5B within 72 h, while in vitro cultures of P. grandiflora and P. putida independently showed 92 and 81 % decolorization within 96 h, respectively. A significant induction in the activities of lignin peroxidase, tyrosinase, 2,6-dichlorophenol indophenol reductase and riboflavin reductase was observed in the roots of P. grandiflora during dye decolorization; whereas, the activities of laccase, veratryl alcohol oxidase and 2,6-dichlorophenol indophenol reductase were induced in the cells of P. putida. Plant and bacterial enzymes in the consortium gave an enhanced decolorization of Direct Red 5B synergistically. The metabolites formed after dye degradation analyzed by UV–Vis spectroscopy, Fourier transformed infrared spectroscopy and high performance liquid chromatography confirmed the biotransformation of Direct Red 5B. Differential fate of metabolism of Direct Red 5B by P. grandiflora, P. putida and their consortium were proposed with the help of gas chromatography–mass spectroscopy analysis. P. grandiflora metabolized the dye to give 1-(4-diazenylphenyl)-2-phenyldiazene, 7-(benzylamino) naphthalene-2-sulfonic acid, 7-aminonaphthalene-2-sulfonic acid and methylbenzene. P. putida gave 4-hydroxybenzenesulfonic acid and 4-hydroxynaphthalene-2-sulfonic acid and benzamide. Consortium showed the formation of benzenesulfonic acid, 4-diazenylphenol, 6-aminonaphthalen-1-ol, methylbenzene and naphthalen-1-ol. Consortium achieved an enhanced and efficient degradation of Direct Red 5B. Phytotoxicity study revealed the nontoxic nature of metabolites formed after parent dye degradation. Use of such combinatorial systems of plant and bacteria could prove to be an effective and efficient strategy for the removal of textile dyes from soil and waterways.