Nitrogen pools in Georgia coastal waters

The amount of nitrogen present as ammonia, nitrate, nitrite, dissolved organic nitrogen, and particulate nitrogen was determined for nearshore Georgia shelf waters and for tidal water inundating a 0.5 hectare dikedSpartina alterniflora salt marsh in the adjacent estuary. Concentrations of ammonia, nitrate, and nitrite were comparatively low in offshore water (<2.2 μg-at N/1), and in high tide water in the marsh (<9.9 μg-at N/1). High concentrations of ammonia, up to 73.4 μg-at N/1, were measured in low tide water draining from marsh. The largest pools of nitrogen in offshore water and in high tide water in the marsh creek were dissolved organic nitrogen (DON) (2.5 to 20.4 μg-at N/1) and particulate nitrogen (PN) (0.1 to 30.0 μg-at N/1). Concentrations in marsh creek water at low tide were higher, ranging from 4.4 to 38.0 μg-at N/1 for DON and from 13.0 to 239.0 μg-at N/1 for PN. Comparisons of the average concentrations of dissolved and particulate forms of nitrogen in the marsh tidal creek during flood and during ebb tide suggested no net movement of the inorganic nitrogen nutrients, a net influx of PN to the marsh, and a net outflux of DON from the marsh.     

Denitrification capacity in a subterranean estuary below a Rhode Island fringing salt marsh

Coastal waters are severely threatened by nitrogen (N) loading from direct groundwater discharge. The subterranean estuary, the mixing zone of fresh groundwater and sea water in a coastal aquifer, has a high potential to remove substantial N. A network of piezometers was used to characterize the denitrification capacity and groundwater flow paths in the subterranean estuary below a Rhode Island fringing salt marsh.¹⁵N-enriched nitrate was injected into the subterranean estuary (in situ push-pull method) to evaluate the denitrification capacity of the saturated zone at multiple depths (125–300 cm) below different zones (upland-marsh transition zone, high marsh, and low marsh). From the upland to low marsh, the water table became shallower, groundwater dissolved oxygen decreased, and groundwater pH, soil organic carbon, and total root biomass increased. As groundwater approached the high and low marsh, the hydraulic gradient increased and deep groundwater upwelled. In the warm season (groundwater temperature >12 °C), elevated groundwater denitrification capacity within each zone was observed. The warm season low marsh groundwater denitrification capacity was significantly higher than all other zones and depths. In the cool season (groundwater temperature <10.5 °C), elevated groundwater denitrification capacity was only found in the low marsh. Additions of dissolved organic carbon did not alter groundwater denitrification capacity suggesting that an alternative electron donor, possibly transported by tidal inundation from the root zone, may be limiting. Combining flow paths with denitrification capacity and saturated porewater residence time, we estimated that as much as 29–60 mg N could be removed from 11 of water flowing through the subterranean estuary below the low marsh, arguing for the significance of subterranean estuaries in annual watershed scale N budgets.     

Habitat use and movement of the mummichog (<Emphasis Type="Italic">Fundulus heteroclitus</Emphasis>) in a restored salt marsh

The mummichog,Fundulus heteroclitus, is one of the most abundant macrofaunal components of salt marsh ecosystems along the east coast of the United States. During April–November 1998, we determined the habitat use and movement patterns of young-of-the-year (YOY) and adult mummichogs in a restored marsh, formerly a salt hay farm, and an adjacent creek in order to expand our understanding of the ecology of the species and evaluate the success of the restoration. Four major fish habitat types (large first-order natural creek, second-order created creek, linear drainage ditch, and marsh surface) were identified within the study site. Patterns of relative abundance and mark and recapture using coded wire tags were used to determine the habitat use, tidal movements, home range, and site fidelity of the species within these habitat types. A total of 14,784 fish, ranging from 20–100 mm SL, were captured with wire mesh traps and tagged, and 1,521 (10.3%) fish were recaptured. A variety of gears were used to attempt to recapture fish across all habitat types, including wire mesh traps, push nets, and otter trawls. Based on abundance and recaptures of tagged fish, the YOY and adults primarily used the shallow subtidal and intertidal areas of the created creek, the intertidal drainage ditches, and the marsh surface of the restored marsh but not the larger, first-order natural creek. At low tide, large numbers were found in the subtidal areas of the created creek; these then moved onto the marsh surface on the flooding tide. Elevation, and thus hydroperiod, appeared to influence the microscale use of the marsh surface. We estimated the home range of adults and large YOY (20–100 mm SL) to be 15 ha at high tide, which was much larger than previously quantified. There was strong site fidelity to the created creek at low tide. The habitat use and movement patterns of the mummichog appeared similar to that reported for natural marshes. Coupled with the results of other studies on the feeding, growth, and production of this species in this restoreh, the species appeared to have responded well to the restoration.     

Nitrogen cycling and ecosystem exchanges in a Virginia tidal freshwater marsh

Tidal freshwater marshes are diverse habitats that differ both within and between marshes in terms of plant community composition, sediment type, marsh elevation, and nutrient status. Because our knowledge of the nitrogen (N) biogeochemistry of tidal freshwater systems is limited, it is difficult to assess how these marshes will respond to long-term progressive nutrient loading due to watershed development and urbanization. We present a process-based mass balance model of N cycling in Sweet Hall marsh, a pristine (i.e., low nutrient)Peltandra virginica-Pontederia cordata dominated tidal freshwater marsh in the York River estuary, Virginia. The model, which was based on a combination of field and literature data, revealed that N cycling in the system was largely conservative. The mineralization of organic N to NH₄ ⁺ provided almost twice as much inorganic N as was needed to support marsh macrophyte and benthic microalgal primary production. Efficient utilization of porewater NH₄ ⁺ by nitrifiers and other microbes resulted in low rates of tidal NH₄ ⁺ export from the marsh and little accumulation of NH₄ ⁺ in marsh porewaters. Inputs of N from the estuary and atmosphere were not critical in supporting marsh primary production, and served to balance N losses due to denitrification and burial. A comparison of these results with the literature suggests that the relative importance of tidal freshwater marsh N cycling processes, including plant productivity, organic matter mineralization, microbial immobilization, and coupled nitrification-denitrification, are largely independent of small changes in water column N loading. Although very high (millimolar) concentrations of dissolved inorganic N can affect processes including denitrification and plant productivity, the factors that cause the switch from efficient N recycling to a more open N cycle have not yet been identified.     

The role of sediment denitrification in reducing groundwater-derived nitrate inputs to Nauset Marsh estuary, Cape Cod, Massachusetts

The Nauset Marsh estuary is the most extensive (9.45 km²) and least disturbed salt marsh/estuarine system within the Cape Cod National Seashore, even though much of the 19 km² watershed area of the estuary is developed for residential or commercial purposes. Because all of the Nauset watershed is serviced by on-site individual sewage disposal systems, there is concern over the potential impact of groundwater-derived nutrients passing from these systems to the shallow receiving waters of the estuary. The purpose of this study was to determine whether denitrification (the bacterial conversion of nitrate to gaseous nitrogen) in estuarine sediments could effectively remove the nitrate from contaminated groundwater before it passed from the watershed to the estuary. Rates of denitrification were measured both in situ and in sediment cores, in areas of active groundwater discharge, in relatively pristine locations, and in areas situated down-gradient of moderate to heavily developed regions of the watershed. Denitrification rates for 47 sediment cores taken over an annual cycle at 5 stations ranged from non-detectable to 47 μmol N₂ m⁻² h⁻. Mean denitrification rates were positively correlated with sediment organic content, and varied seasonally due to changes in sediment organic content and to the effect of water temperatures on sediment oxygen penetration depths. There was no correlation between observed denitrification rates and corresponding nitrate concentrations in groundwater. A comparison of in situ denitrification rates (supported by groundwater nitrate) with denitrification rates observed in sediment cores (supported by remineralized nitrate) showed that groundwater-driven denitrification rates were small, and not in excess of denitrification rates supported by remineralized nitrate. Most of the denitrification in Nauset sediments was apparently fueled by remineralized nitrate through coupled nitrification/denitrification. Denitrification did not contribute significantly to the direct loss of nitrate from incoming groundwater at Nauset Marsh estuary. Groundwater flow was rapid, and much of it occurred in freshwater springs and seeps through very coarse, sandy, well-oxygenated sediments of limited organic content. There was little opportunity for denitrification to occur during groundwater passage through these sediments. These results have important management implications because they suggest that the majority of nitrogen from contaminated groundwater crosses the sediment/water interface and arrives at Nauset Estuary, where it is available to primary producers. Preliminary budget calculations suggest that while denitrification was not an effective mechanism for the direct removal of nitrate in contaminated groundwater flowing to Nauset Marsh estuary, it may contribute to significant nitrogen losses from the estuary itself.     

Accumulation of plant nutrients and heavy metals through sedimentation processes and accretion in a Louisiana salt marsh

The accumulation of selected plant nutrients and heavy metals in a rapidly accreting Louisiana salt marsh was examined. Sedimentation processes were shown to be supplying large amounts of plant nutrients to the marsh. Accumulation of heavy metals was low and appeared to be associated with the natural heavy metal content of incoming sediment rather than from a pollution source. A large portion of organic carbon from primary production remained in the marsh, contributing to the aggradation process of vertical marsh accretion. Nitrogen accumulated in the marsh at rates as great as 21 g per m² per yr.     

Succession of microphytobenthos in a restored coastal wetland

Sediment microphytobenthos, such as diatoms and photosynthetic bacteria, are functionally important components of food webs and are key mediators of nutrient dynamics in marine wetlands. The medium to long-term recovery of benthic microproducers in restored habitats designed to improve degraded coastal wetland sites is largely unknown. Using taxon-specific photopigments, we describe the composition of microphytobenthic communities in a large restoration site in southern California and differences in the temporal recovery of biomass (chlorophylla), composition, and taxonomic diversity between vegetatedSpartina foliosa salt marsh and unvegetated mudflat. Visually distinct, spatially discreet, microphytobenthic patches appeared after no more than 7 mo within the restoration site and were distinguished by significant differences in biomass, taxonomic diversity, and the relative abundance of cyanobacteria versus diatoms. Sediment chlorophylla concentrations within the restored site were similar to concentrations in nearby natural habitat 0.2–2.2 yr following marsh creation, suggesting rapid colonization by microproducers. RestoredSpartina marsh very rapidly (between 0.2 and 1.2 yr) acquired microphytobenthic communities of similar composition and diversity to those in naturalSpartina habitat, but restored mudflats took at least 1.6 to 2.2 yr to resemble natural mudflats. These results suggest relatively rapid recovery of microphytobenthic communities at the level of major taxonomic groups. Sediment features, such as pore water salinity andSpartina density, explained little variation in microphytobenthic taxonomic composition. The data imply that provision of structural heterogeneity in wetland construction (such as pools and vascular plants) might speed development of microproducer communities, but no direct seeding of sediment microfloras may be necessary.     

Tidal utilization of nekton in Delaware Bay restored and reference intertidal salt marsh creeks

Large-scale marsh restoration efforts were conducted to restore normal salt marsh structure and function to degraded marshes (i.e., former salt hay farms) in the mesohaline lower Delaware Bay. While nekton response has been previously evaluated for the marsh surface and subtidal creeks in these marshes, little effort has been focused on intertidal creeks. Nekton response in intertidal creeks was evaluated by sampling with seines to determine if restored (i.e., former salt hay farms restored in 1996) and reference (i.e., natural or relatively undisturbed) salt marshes were utilized by intertidal nekton in a similar manner. The overall nekton assemblage during June–October 2004–2005 was generally comprised of the same species in both the restored and reference marshes. Intertidal creek catches in both marsh types consisted primarily ofFundulus heteroclitus andMenidia menidia, with varying numbers of less abundant transient species present. Transient nekton were more abundant at restored marshes than reference marshes, but in insufficient numbers to cause differences in nekton assemblages. In both marsh types, low tide stages were characterized by resident nekton, dominated byF. heteroclitus, while high tide stages were characterized by a variable mix of transient and resident nekton. Assemblage level analyses indicated that intertidal creeks in restored and reference marshes were generally utilized in a similar manner by a similar nekton assemblage, so restoration efforts were deemed successful. This is in agreement with multiple comparative studies from the ame marshes examining fish, invertebrates, and vegetation in different marsh habitats.     

The influence of subsurface hydrology on nutrient supply and smooth cordgrass (Spartina alterniflora) production in a developing barrier island marsh

The supply of nutrients from surface and subsurface water flow into the root zone was measured in a developing barrier island marsh in Virginia. We hypothesize that high production of tall-formSpartina alterniflora in the lower intertidal zone is due to a greater nitrogen input supplied by a larger subsurface flux. Individual nitrogen inputs to the tall-form and short-formS. alterniflora root zones were calculated from water flow rates into the root zone and the nutrient concentration corresponding to the source of the flow. Total dissolved inorganic nitrogen (DIN) input (as ammonium and nitrate) was then calculated using a summation of the hourly nutrient inputs to the root zone over the entire tidal cycle based on hydrologic and nutrient data collected throughout the growing season (April–August) of 1993 and 1994. Additionally, horizontal water flow into the lower intertidal marsh was reduced experimentally to determine its effects on nutrient input and plant growth. Total ammonium (NH₄ ⁺) input to the tall-formS. alterniflora root zone (168 μmoles 6 h^?1) was significantly greater relative to the short-form (45 μmoles 6 h^?1) during flood tide. Total NH₄ ⁺ input was not significantly different between growth forms during ebb tide, and total nitrate (NO₃ ^?) and total DIN input were not significantly different between growth forms during either tidal stage. During tidal flooding, vertical flow from below the root zone accounted for 71% and horizontal flow from the adjacent mudflat accounted for 19% of the total NH₄ ⁺ input to the tall-formS. alterniflora root zone. Infiltration of flooding water accounted for 15% more of the total NO₃ ^? input relative to the total NH₄ ⁺ input at both zones on flood tide. During ebb tide, vertical flow from below the root zone still accounted for the majority of NH₄ ⁺ and NO₃ ^? input to both growth forms. After vertical flow, horizontal subsurface flow from upgradient accounted for the next largest percentages of NH₄ ⁺ and NO₃ ^? input to both growth forms during ebb tide. After 2 yr of interrupted subsurface horizontal flow to the tall-formS. alterniflora root zone, height and nitrogen content of leaf tissue of treatment plants were only slightly, but significantly, lower than control plants. The results suggest that a dynamic supply of DIN (as influenced by subsurface water flows) is a more accurate depiction of nutrient supply to macrophytes in this developing marsh, relative to standing stock nutrient concentrations. The dynamic subsurface supply of DIN may play a role in spatial patterns of abovegroundS. alterniflora production, but determination of additional nitrogen inputs and the role of belowground production on nitrogen demand need to also be considered.     

Plant and infaunal communities associated with a created marsh

Destruction of tidal wetlands has led to a growing interest in the restoration and creation of new wetland habitat. However, while natural stands of vegetation have been successfully duplicated, less is understood about the establishment of faunal communities in created or restored tidal marshes. Infauna, which may form an important link between detrital production and commercially important finfish and decapods, have received limited attention in vegetated marsh habitats. We examined the infauna, changes in vegetation composition, and selected physical parameters in created marshes of different ages. Infauna were sampled using standard core sampling techniques. Vegetation composition and changes in relative abundance were observed using plot-point techniques. Vegetation plots indicated ongoing replacement ofSpartina alterniflora bySchoenoplectus robustus, a pattern supported by comparisons of vegetation at one of the sites to that reported in a previous study. Infauna exhibited significant differences between sites of different ages, with the intermediate-age site having intermediate densities for several taxa. These results suggest that both infauna and vegetation in created marshes undergo long-term change (ongoing after 10–20 yr), with both the plant and infaunal communities having qualitatively similar overall species composition to natural marsh areas.     

Evaluating salt marsh restoration in Delaware Bay: Analysis of Fish response at former salt hay farms

In a continuing effort to monitor the fish response to marsh restoration (resumed tidal flow, creation of creeks), we compared qualitative and quantitative data on species richness, abundance, assemblage structure and growth between pre-restoration and post-restoration conditions at two former salt hay farms relative to a reference marsh in the mesohaline portion of Delaware Bay. The most extensive comparison, during April–November 1998, sampled fish populations in large marsh creeks with otter trawls and in small marsh creeks with weirs. Species richness and abundance increased dramatically after restoration. Subsequent comparisons indicated that fish size, assemblage structure, and growth of one of the dominant species,Micropogonias undulatus, was similar between reference and restored marshes 1 and 2 yr post-restoration. Total fish abundance and abundance of the dominant species was greater, often by an order of magnitude, in one of the older restored sites (2 yr post-restoration), while the other restored site (1 yr post-restoration) had values similar to the reference marsh. The success of the restoration at the time of this study suggests that return of the tidal flow and increased marsh area and edge in intertidal and subtidal creeks relative to the former salt hay farms contributed to the quick response of resident and transient young-of-the-year fishes.     

Gut contents of common mummichogs,Fundulus heteroclitus L., in a restored impounded marsh and in natural reference marshes

We examined the gut contents of mummichogs, Fundulus heteroclitus L., entering and leaving ditches in three marsh regions within the Barn Island Wildlife Management Area in Connecticut: a restored impounded valley marsh, a marsh below the impoundment dike (Headquarters Marsh), and an unimpounded valley marsh (Davis Marsh). On the Headquarters Marsh and at certain times on the other two marshes, fish entered the ditches on the flooding tide with relatively little food in their guts and left them on the following ebbing tide with considerably more food in their guts. Since the high tides did not flood the surface of the high marsh, it appears that the ditches are important foraging areas. Major components of the gut contents were detritus, algae, amphipods, tanaids, copepods, and insects. During the summer, fish in the restored impounded marsh consumed less food per unit body weight than did fish inhabiting the other marsh regions.     

Anammox in Tidal Marsh Sediments: The Role of Salinity,Nitrogen Loading,and Marsh Vegetation

Anammox bacteria are widespread in the marine environment, but studies of anammox in marshes and other wetlands are still scarce. In this study, the role of anammox in nitrogen removal from marsh sediments was surveyed in four vegetation types characteristic of New England marshes and in unvegetated tidal creeks. The sites spanned a salinity gradient from 0 to 20 psu. The impact of nitrogen loading on the role of anammox in marsh sediments was studied in a marsh fertilization experiment and in marshes with high nitrogen loading entering through ground water. In all locations, nitrogen removal through anammox was low compared to denitrification, with anammox accounting for less than 3% of the total N₂ production. The highest relative importance of anammox was found in the sediments of freshwater-dominated marshes, where anammox approached 3%, whereas anammox was of lesser importance in saline marsh sediments. Increased nitrogen loading, in the form of nitrate from natural or artificial sources, did not impact the relative importance of anammox, which remained low in all the nitrogen enriched locations (<1%).     

The mass balance of salt and water in intertidal sediments: Results from North Inlet,South Carolina

Salinity can be used as a conservative tracer of porewater turnover in circumstances when evapotranspiration is great enough to concentrate porewater salts in intertidal sediments. At two intertidal sites situated at mean high tide at North Inlet, South Carolina, porewater drainage was estimated by this method to be 9.4 m^?2 d^?1 and 16.6 1 m^?2 d^?1, depending on physical soil properties and assuming that solute losses occur by simple diffusion across the sediment surface, by uptake and excretion by vegetation, and by drainage. Mass balance simulations indicated that sediment physical properties, evapotranspiration, and elevation are important determinants of seasonal salinity extremes. At sites situated mear mean high tide, small differences in elevation significantly affect salinity and drainage rate. As site elevation increases, losses of solutes by drainage and diffusion decrease, and the variability of porewater salinity increases. This is significant because interannual changes in mean sea level, which average ±2.9 cm on the South Carolina coast, can have a great impact on the structure and function of estuaries due to changes in the solute balance of intertidal zone sediments. Mass balance simulations that used reduced evapotranspiration rates typical of colder climates significantly reduced the mean and variability of porewater salinity, which suggests that at lower latitudes salinity becomes a more dominant determinant of biological processes. This should influence a number of processes including primary productivity, strategies of water conservation and osmoregulation, and community structure. This conclusion is consistent with published data that show tropical mangroves to have lower photosynthetic rates, and presumably lower gas exchange rates in general, than mid- and high-latitude salt marsh grasses.     

Nitrogen,phosphorus and organic carbon pools in natural and transplanted marsh soils

Total nitrogen, phosphorus and organic carbon were compared in natural and transplanted estuarine marsh soils (top 30 cm) to assess nutrient storage in transplanted marshes. Soils were sampled in five transplanted marshes ranging in age from 1 to 15 yr and in five nearby natural marshes along the North Carolina coast. Dry weight of macroorganic matter (MOM), soil bulk density, pH, humic matter, and extractable P also were measured. Nutrient pools increased with increasing marsh age and hydroperiod. Nitrogen, phosphorus and organic carbon pools were largest in soils of irregularly flooded natural marshes. The contribution of MOM to marsh nutrient reservoirs was 6–45%, 2–22%, and 1–7% of the carbon, nitrogen and phosphorus, respectively. Rates of nutrient accumulation in transplanted marshes ranged from 2.6–10.0, 0.03–1.10, and 84–218 kmol ha^?1yr^?1 of nitrogen, phosphorus and organic carbon, respectively. Accumulation rates were greater in the irregularly flooded marshes compared to the regularly flooded marshes. Approximately 11 to 12% and 20% of the net primary production of emergent vegetation was buried in sediments of the regularly flooded and irregularly flooded transplanted marshes, respectively. Macroorganic matter nutrient pools develop rapidly in transplanted marshes and may approximate natural marshes within 15 to 30 yr. However, development of soil carbon, nitrogen and phosphorus reservoirs takes considerably longer.     

Sedimentation rates in flow-restricted and restored salt marshes in Long Island Sound

Many salt marshes in densely populated areas have been subjected to a reduction in tidal flow. In order to assess the impact of tidal flow restriction on marsh sedimentation processes, sediment cores were collected from flow-restricted restricted salt marshes along the Connecticut coast of Long Island Sound. Cores were also collected from unrestricted reference marshes and from a marsh that had been previously restricted but was restored to fuller tidal flushing in the 1970's. High bulk densities and low C and N concentrations were found at depth in the restricted marsh cores, which we attribute to a period of organic matter oxidation, sediment compaction, and marsh surface subsidence upon installation of flow restrictions (between 100 and 200 years before the present, depending on the marsh). Recent sedimentation rates at the restricted marshes (as determined by¹³⁷Cs and²¹⁰Pb dating) were positive and averaged 78% (¹³⁷Cs) and 50% (²¹⁰Pb) of reference marsh sedimentation rates. The accumulation of inorganic sediment was similar at the restricted and reference marshes, perhaps because of the seasonal operation of the tide gates, while organic sediment accretion (and pore space) was significantly lower in the restricted marshes, perhaps because of higher decomposition rates. Sedimentation rates at the restored marsh were significantly higher than at the reference marshes. This marsh has responded to the higher water levels resulting from restoration by a rapid increase in marsh surface elevation.     

Nitrogen and phosphorus in the sediments of a tidal,freshwater marsh in Massachusetts

Total organic nitrogen (TON) and phosphorus (TOP) were measured as a function of depth in 14 cores taken from a New England, tidal, freshwater marsh. TON and TOP ranged from 1.56 to 1.97% and 0.11 to 0.30% of dry weight sediments, respectively. The variation in both pool sizes over time was small and TON varied inconsistently with depth; however, TOP decreased regularly down to 20 cm. Consequently, the TON: TOP ratio increased linearly from 14∶1 at the surface to 32∶1 at 20 cm, then was nearly constant to 70 cm. This pattern may be a general feature of marsh sediments and may indicate 1) that phosphorus is recycled less efficiently than nitrogen, 2) that over time proportionately more introgen than phosphorus is incorporated into recalcitrant compounds, or 3) that phosphorus is more mobile than nitrogen in these marsh sediments. The total inorganic nitrogen pool was measured in this marsh also and was dominated by ammonium (97% of total). The annual average free ammonium concentration was 3.70±0.64 mg N per 1 at the surface and decreased to 0.92±0.18 mg N per 1 at 20 to 22 cm in the sediments. Sorptiondesorption studies showed that, on a fresh sediment volume basis, sediment sorbed ammonium was roughly equivalent to free porewater ammonium (K=0.8). The relationship between free and sorbed ammonium was linear between 0.4 and 24.0 mg NH₄·N per 1 of pore water. The depth distribution of ammonium in these sediments is probably maintained by a dynamic balance between net microbial mineralization of litter, plant uptake, transpiration, diffusion, and porewater advection.     

Variable Nitrification Rates Across Environmental Gradients in Turbid,Nutrient-Rich Estuary Waters of San Francisco Bay

Understanding rates of nitrogen cycling in estuaries is crucial for understanding their productivity and resilience to eutrophication. Nitrification, the microbial oxidation of ammonia to nitrite and nitrate, links reduced and oxidized forms of inorganic nitrogen and is therefore an important step of the nitrogen cycle. However, rates of nitrification in estuary waters are poorly characterized. In fall and winter of 2011–2012, we measured nitrification rates throughout the water column of all major regions of San Francisco Bay, a large, turbid, nutrient-rich estuary on the west coast of North America. Nitrification rates were highest in regions furthest from the ocean, including many samples with rates higher than those typically measured in the sea. In bottom waters, nitrification rates were commonly at least twice the magnitude of surface rates. Strong positive correlations were found between nitrification and both suspended particulate matter and ammonium concentration. Our results are consistent with previous studies documenting high nitrification rates in brackish, turbid regions of other estuaries, many of which also showed correlations with suspended sediment and ammonium concentrations. Overall, nitrification in estuary waters appears to play a significant role in the estuarine nitrogen cycle, though the maximum rate of nitrification can differ dramatically between estuaries.     

Accretion rates and sediment accumulation in Rhode Island salt marshes

In order to test the assumption that accretion rates of intertidal salt marshes are approximately equal to rates of sea-level rise along the Rhode Island coast,²¹⁰Pb analyses were carried out and accretion rates calculated using constant flux and constant activity models applied to sediment cores collected from lowSpartina alterniflora marshes at four sites from the head to the mouth of Narragansett Bay. A core was also collected from a highSpartina patens marsh at one site. Additional low marsh cores from a tidal river entering the bay and a coastal lagoon on Block Island Sound were also analyzed. Accretion rates for all cores were also calculated from copper concentration data assuming that anthropogenic copper increases began at all sites between 1865 and 1885. Bulk density and weight-loss-on-ignition of the sediments were measured in order to assess the relative importance of inorganic and organic accumulation. During the past 60 yr, accretion rates at the eight low marsh sites averaged 0.43±0.13 cm yr^?1 (0.25 to 0.60 cm yr^?1) based on the constant flux model, 0.40±0.15 cm yr^?1 (0.15 to 0.58 cm yr^?1) based on the constant activity model, and 0.44±0.11 cm yr^?1 (0.30 to 0.59 cm yr^?1) based on copper concentration data, with no apparent trend down-bay. High marsh rates were 0.24±0.02 (constant flux), 0.25±0.01 (constant activity), and 0.47±0.04 (copper concentration data). The cores showing closest agreement between the three methods are those for which the excess²¹⁰Pb inventories are consistent with atmospheric inputs. These rates compare to a tide gauge record from the mouth of the bay that shows an average sea-level rise of 0.26±0.02 cm yr^?1 from 1931 to 1986. Low marshes in this area appear to accrete at rates 1.5–1.7 times greater than local relative sea-level rise, while the high marsh accretion rate is equal to the rise in sea level. The variability among the low marsh sites suggests that marshes may not be poised at mean water level to within better than ±several cm on time scales of decades. Inorganic and organic dry solids each contributed about 9% by volume to low marsh accretion, while organic dry solids contributed 11% and inorganic 4% to high marsh accretion. Water/pore space accounted for the majority of accretion in both low and high marshes. If water associated with the organic component is considered, organic matter accounts for an average of 91% of low marsh and 96% of high marsh accretion. A dramatic increase in the organic content at a depth of 60 to 90 cm in the cores from Narragansett Bay appears to mark the start of marsh development on prograding sand flats.     

Broad Timescale Forcing and Geomorphic Mediation of Tidal Marsh Flow and Temperature Dynamics

Tidal marsh functions are driven by interactions between tides, landscape morphology, and emergent vegetation. Less often considered are the diurnal pattern of tide extremes and seasonal variation of solar insolation in the mix of tidal marsh driver interactions. This work demonstrates how high-frequency hydroperiod and water temperature variability emerges from disparate timescale interactions between tidal marsh morphology, tidal harmonics, and meteorology in the San Francisco Estuary. We compare the tidal and residual flow and temperature response of neighboring tidal sloughs, one possessing natural tidal marsh morphology, and one that is modified for water control. We show that the natural tidal marsh is tuned to lunar phase and produces tidal and fortnight water temperature variability through interacting tide, meteorology, and geomorphic linkages. In contrast, temperature variability is dampened in the modified slough where overbank marsh plain connection is severed by levees. Despite geomorphic differences, a key finding is that both sloughs are heat sinks in summer by latent heat flux-driven residual upstream water advection and sensible and long-wave heat transfer. The precession of a 335-year tidal harmonic assures that these dynamics will shift in the future. Water temperature regulation appears to be a key function of natural tidal sloughs that depends critically on geomorphic mediation. We investigate approaches to untangling the relative influence of sun versus tide on residual water and temperature transport as a function of system morphology. The findings of this study likely have ecological consequences and suggest physical process metrics for tidal marsh restoration performance.