Isolation and characterization of two crude oil-degrading yeast strains, Yarrowia lipolytica PG-20 and PG-32, from the Persian Gulf

Among six crude oil-degrading yeasts that were isolated from an oil-polluted area in the Persian Gulf, two yeast strains showed high degradation activity of aliphatic hydrocarbons. From an analysis of 18S rRNA sequences and biochemical characteristics, these strains were identified as Yarrowia lipolytica strains PG-20 and PG-32. Gas Chromatography (GC) analysis of the crude oil remaining in the culture medium after 1 week at 30°C showed that the strains PG-20 and PG-32 degraded 68% and 58% of crude oil, respectively. The optimal growth condition and biodegradation of hydrocarbons was in ONR medium with an acidic pH (pH5). These two strains may degrade aliphatic hydrocarbons more efficiently than aromatic hydrocarbons, although strain PG-20 had better degradation than strain PG-32. The two Y. lipolytica strains reduce surface tension when cultured on hydrocarbon substrates (1% v/v). These strains showed a cell surface hydrophobicity higher than 70%. These results suggested that Y. lipolytica strains PG-20 and PG-32 have high crude oil degrading activity due to their high emulsifying activity and cell hydrophobicity. In conclusion, these yeast strains can be useful for the bioremediation process in the Persian Gulf and decreasing oil pollution in this marine ecosystem.     

Impacts of gold mine waste disposal on deepwater fish in a pristine tropical marine system

Little is known about the impacts of mine waste disposal, including deep-sea tailings, on tropical marine environments and this study presents the first account of this impact on deepwater fish communities. The Lihir gold mine in Papua New Guinea has deposited both excavated overburden and processed tailings slurry into the coastal environment since 1997. The abundances of fish species and trace metal concentrations in their tissues were compared between sites adjacent to and away from the mine. In this study (1999-2002), 975 fish of 98 species were caught. Significantly fewer fish were caught close to the mine than in neighbouring regions; the highest numbers were in regions distant from the mine. The catch rates of nine of the 17 most abundant species were lowest, and in three species were highest, close to the mine. There appears to be limited contamination in fish tissues caused by trace metals disposed as mine waste. Although arsenic (several species) and mercury (one species) were found in concentrations above Australian food standards. However, as in the baseline (pre-mine) sampling, it appears they are accumulating these metals mostly from naturally-occurring sources rather than the mine waste.     

Shelf habitat distribution as a legacy of Late Quaternary marine transgressions: A case study from a tropical carbonate province

The legacy of multiple marine transgressions is preserved in a complex morphology of ridges, mounds and reefs on the Carnarvon continental shelf, Western Australia. High-resolution multibeam sonar mapping, underwater photography and sampling across a 280 km² area seaward of the Ningaloo Coast World Heritage Area shows that these raised features provide hardground habitat for modern coral and sponge communities. Prominent among these features is a 20 m high and 15 km long shore-parallel ridge at 60 m water depth. This ridge preserves the largely unaltered form of a fringing reef and is interpreted as the predecessor to modern Ningaloo Reef. Landward of the drowned reef, the inner shelf is covered by hundreds of mounds (bommies) up to 5 m high and linear ridges up to 1.5 km long and 16 m high. The ridges are uniformly oriented to the north-northeast and several converge at their landward limit. On the basis of their shape and alignment, these ridges are interpreted as relict long-walled parabolic dunes. Their preservation is attributed to cementation of calcareous sands to form aeolianite, prior to the post-glacial marine transgression. Some dune ridges abut areas of reef that rise to sea level and are highly irregular in outline but maintain a broad shore-parallel trend. These are tentatively interpreted as Last Interglacial in age. The mid-shelf and outer shelf are mostly sediment covered with relatively low densities of epibenthic biota and have patches of low-profile ridges that may also be relict reef shorelines. An evolutionary model for the Carnarvon shelf is proposed that relates the formation of drowned fringing reefs and aeolian dunes to Late Quaternary eustatic sea level.     

Infiltration-excess caused by Stemflow in a cyclone-prone tropical rainforest

Tropical rainforest canopy trees that have large projected areas of upwardly inclined branches are capable of funnelling large volumes of rainwater down their trunks. During periods of prolonged heavy rainfall on Mount Bellenden Ker in northeast Queensland, Australia, stemflow volumes were found to be as much as two orders of magnitude greater than the volume of incident rainfall expected in a rain gauge occupying an area equal to the trunk basal area. Stemflow totals ranging from 6000 to 70000 litres were generated by individual trees from 7800 mm of rainfall over two successive wet seasons. The combination of high intensity rainfall and the funnelling effect results in significant quantities of infiltration-excess at the ground surface. Stemflow fluxes as high as 31.4 cm³ min^?1 per cm² of basal area (i.e. the equivalent of 314 mm min^?1) were recorded when rainfall intensity was only 2 mm min^?1. The mean infiltration capacity of the topsoil was determined to be 6.2 mm min^?1. The areas over which the stemflow would have had to spread in order to infiltrate were computed to be as much as 3 m² around the bases of individual canopy trees. Approximations of the distances that the infiltration-excess would have travelled away from the tree bases were calculated by assuming that the infiltration area either expands radially outward in the form of an annulus or extends straight downslope from the tree base.     

Monsoonal quasi-stationary ultralong waves of the tropical troposphere predicted by a real data prediction over a global tropical belt

The mechanisms of the maintenance of the tropical upper tropospheric quasi-stationary ultralong waves during the northern hemisphere summer season are briefly reviewed and discussed. Diagnostic and prognostic studies indicate that the waves are maintained by the land-ocean contrast heating. These scales of motion as a whole (sum of the zonal wavenumbers 1, 2 and 3) are considered to supply kinetic energy to all other scales of motion.The ultralong waves predicted in the real data numerical prediction experiment over the global tropics using a multi-level primitive equation model are examined and compared with the observed climatological waves. The predicted waves are found to have several similarities with the observations. Further investigations of the baroclinic nature of the waves indicate that their thermal structure is essential for understanding their dynamics.The vorticity budget computations are performed for the predicted ultralong waves at 200 mb and also compared with the climatological observations. It is found that the advection term is one of the leading terms in the vorticity equation.This study indicates that the tropical quasi-stationary ultralong waves are fully nonlinear, non-geostrophic, three-dimensional waves forced mainly by the convective heating over the monsoon Indian subcontient.     

Biosorption of heavy metals by a marine bacterium

Heavy metal chelation property of exopolysaccharide produced by Enterobacter cloaceae, a marine bacterium, isolated from the West Coast of India, is reported in this paper. The exopolysaccharide demonstrated excellent chelating properties with respect to cadmium (65%) followed by copper (20%) and cobalt (8%) at 100 mg/l heavy metal concentration. However, it could not chelate mercury. A comparative study of the percentage biosorption of the above mentioned metals is presented here.     

MOSES, a promising concept for marine research

The objective of the EUROMAR project Mobile Station for Environmental Services (MOSES) is the optimization, promotion and harmonization of the design and use of containerized laboratories. The project is designed to study and implement innovative mobile laboratories having the same dimensions as standard shipping containers. They are used in specific environmental activities and designed to be installed on board a ship, an offshore platform or used on land as a multi-activity operative base.     

Groundwater use by vegetation in a tropical savanna riparian zone (Daly River, Australia)

Soil water matric potentials (Ψ_m) and the deuterium (δ²H) composition at natural abundance levels of xylem water, soil water, river water and groundwater were used to evaluate whether trees use groundwater during the dry season in the riparian zone of the Daly River (Northern Territory, Australia). Groundwater was a significant source of water for plant transpiration, probably accounting for more than 50% of the water transpired during the dry season. Groundwater use occurred either when trees used water from the capillary fringe or when low Ψ_m induced by soil water uptake lifted groundwater in the vadose zone. Several water use strategies were inferred within the riparian plant community. Melaleuca argentea W. Fitzg and Barringtonia acutangula (L.) Gaertn. appeared to be obligate phreatophytes as they used groundwater almost exclusively and were associated with riverbanks and lower terraces with shallow (<5 m) water tables. Several species appeared to be facultative phreatophytes (including Cathorium umbellatum (Vahl.) Kosterm. and Acacia auriculiformis A. Cunn. ex Benth.) and tended to rely more heavily on soil water with increased elevation in the riparian zone. The levee-bound Corymbia bella K.D. Hill and L.A.S. Johnson mostly used soil water and is either a facultative phreatophyte or a non-phreatophyte. The temporal variability in groundwater utilisation by the trees is unclear because the study focused on the end of the dry season only. A decline in the regional water table as a result of groundwater pumping may affect the health of riparian zone vegetation in the Daly River because groundwater use is significant during the dry season.     

The effects of prolonged darkness on temperate and tropical marine phytoplankton, and their implications for ballast water risk management

Phytoplankton assemblages from tropical (Goa) and temperate (UK) locations were exposed to a 28 day dark period, followed by a period of re-exposure to light. During this time phytoplankton survival and changes in nutrient concentrations were mapped. The tropical plankton water samples showed high nutrient levels after the dark period which were utilised by cells during the re-exposure period. UK experiments looked at the effect of three different water types on population recovery after the 28 day dark period, and differences due to seasonal effects.The population growth observed during the re-exposure period in the tropical population was comparable to that of the temperate population. Water type affected recovery and of the three tested media fresh seawater promoted the highest levels of growth. Seasonality had a significant influence on species survival. Understanding the effects of all these factors can aid the development of effective risk assessments in ballast water management.     

Larval fish assemblages in a tropical mangrove estuary and adjacent coastal waters: Offshore-inshore flux of marine and estuarine species

A total of 92,934 fish larvae representing 19 families were sampled monthly from the Sangga Kecil estuary (Matang Mangrove Forest Reserve) and adjacent coastal waters from May 2002 to October 2003. Larval fish assemblages were numerically dominated by Gobiidae (50.1%) and Engraulidae (38.4%). Canonical Correspondence Analysis (CCA) revealed that the larval fish assemblages, including their ontogenetic stages, differed between the mangrove estuary and adjacent offshore waters, and that salinity, turbidity and zooplankton food are the major environmental factors structuring the larval fish assemblages. Estuarine preflexion gobiid larvae were ubiquitous in the coastal and estuarine waters. Larval stages of euryhaline species that were spawned in offshore waters, such as Engraulidae and Clupeidae, were largely advected into mangrove areas at the postflexion stages. Larvae of other euryhaline fishes (Sciaenidae, Blenniidae and Cynoglossidae) that may have been spawned inside the estuary were, however, exported to offshore waters. Given that the collective number of juvenile and adult fish families in the Matang estuary was 53, while the number of larval families was only 17, the former is quite disconnected from the existing larval fish population in the estuary.     

Gamma random field simulation by a covariance matrix transformation method

In studies involving environmental risk assessment, Gaussian random field generators are often used to yield realizations of a Gaussian random field, and then realizations of the non-Gaussian target random field are obtained by an inverse-normal transformation. Such simulation process requires a set of observed data for estimation of the empirical cumulative distribution function (ECDF) and covariance function of the random field under investigation. However, if realizations of a non-Gaussian random field with specific probability density and covariance function are needed, such observed-data-based simulation process will not work when no observed data are available. In this paper we present details of a gamma random field simulation approach which does not require a set of observed data. A key element of the approach lies on the theoretical relationship between the covariance functions of a gamma random field and its corresponding standard normal random field. Through a set of devised simulation scenarios, the proposed technique is shown to be capable of generating realizations of the given gamma random fields.     

Generation of baroclinic topographic waves by a tropical cyclone impacting a low-latitude continental shelf

Numerical model experiments have been performed to analyze the low-latitude baroclinic continental shelf response to a tropical cyclone. The theory of coastally trapped waves suggests that, provided appropriate slope, latitude, stratification and wind stress, bottom-intensified topographic Rossby waves can be generated by the storm. Based on a scale analysis, the Nicaragua Shelf is chosen to study propagating topographic waves excited by a storm, and a model domain is configured with simplified but similar geometry. The model is forced with wind stress representative of a hurricane translating slowly over the region at 6 km h⁻¹. Scale analysis leads to the assumption that baroclinic Kelvin wave modes have minimal effect on the low-frequency wave motions along the slope, and coastal-trapped waves are restricted to topographic Rossby waves. Analysis of the simulated motions suggests that the shallow part of the continental slope is under the influence of barotropic topographic wave motions and at the deeper part of the slope baroclinic topographic Rossby waves dominate the low-frequency motions. Numerical solutions are in a good agreement with theoretical scale analysis. Characteristics of the simulated baroclinic waves are calculated based on linear theory of bottom-intensified topographic Rossby waves. Simulated waves have periods ranging from 153 to 203 h. The length scale of the waves is from 59 to 87 km. Analysis of energy fluxes for a fixed volume on the slope reveals predominantly along-isobath energy propagation in the direction of the group velocity of a topographic Rossby wave. Another model experiment forced with a faster translating hurricane demonstrates that fast moving tropical cyclones do not excite energetic baroclinic topographic Rossby waves. Instead, robust inertial oscillations are identified over the slope.     

Effects of some environmental parameters on the reproduction and development of a tropical marine harpacticoid copepod Nitocra affinis f. californica Lang

The effects of salinity, temperature, and light conditions on the reproduction and development of harpacticoid copepod, Nitocra affinis f. californica under controlled laboratory conditions were determined. Seven different salinity levels (5, 10, 15, 20, 25, 30, 35 ppt), four temperatures (20, 25, 30, 35 °C), three different light intensities (25, 56, 130 μmol m⁻² s⁻¹) and photoperiods (24 h:0 h, 1 h:23 h, 12 h:12 h LD cycle) were employed in this study. The highest (p < 0.05) overall reproduction and fastest development time were achieved by copepods reared under 30–35 ppt salinity. The optimum temperature required for the maximum reproduction was 30 °C while under 30 °C and 35 °C the copepod development time was shortest (p < 0.05) compared to other temperature levels. The overall reproduction was highest (p < 0.05) and development rate of N. affinis was shortest (p < 0.05) under lowest light intensity (25 μmol m⁻² s⁻¹). Continuous light (24 h:0 h LD) inhibited the egg production while, continuous darkness (1 h:23 h LD) and 12 h:12 h LD significantly favoured the overall reproductive activity of the female. Photoperiods 1 h:23 h and 12 h:12 h LD yielded highest total (p < 0.05) offspring female⁻¹ coupled with highest (p < 0.05) survival percentage. This study illustrated that although N. affinis can tolerate wide range of environmental conditions, prolonged exposure to subnormal environments affect its reproduction and development. This study showed that this species can be mass cultured for commercial purposes and has a potential to be used for toxicity studies due to its high reproductive performance fast development and a wide range of tolerance to environmental conditions.     

Physical,radiative, and dynamical processes within a nighttime marine stratus cloud

Observations taken by aircraft and conventional platforms are used to investigate dynamical, physical, and radiative processes within a marine stratus cloud during the Canadian Atlantic Storms Program (CASP) II field project which took place over the east coast of Canada. Stratus which formed over the ocean on February 6, 1992 during the nighttime, is studied to analyze cloud top and base processes. The cloud was supercooled during the study period. Fluctuations and fluxes are calculated along constant flight altitude legs approximately 100 km long in space. The scales of structures larger than 5 km are removed from the analysis using a running average technique. Droplet spectra obtained by a forward scattering spectrometer probe (FSSP) were used in a 1-D radiative transfer model to calculate infrared (IR) fluxes and radiative heating rates. A heat conservation equation was used to estimate vertical air velocity (w _a ) within the cloud. The results showed that, because of a warmer ocean surface, significant moisture and heat were transferred from the ocean surface to the boundary layer. The cloud base was at about 400 m height and the top was at about 1.4 km.w _a at the cloud base was estimated about 5 cm s^–1. Strong IR cooling rate at the cloud top was calculated to be 75°C day^–1 for a 100 m thick layer. Negative skewness inw _a , suggesting narrow downdrafts, was likely due to radiative cooling at the cloud top. The entrainment velocity was found to be about 1.5 cm s^–1 at cloud top. Mean moisture and heat fluxes within the cloud were estimated to be comparable to those from the ocean surface. Vertical air velocity at the cloud top due to radiative cooling was found to be about –40 cm s^–1.     

Investigation of the mud crab (Scylla serrata) as a potential bio-monitoring species for tropical coastal marine environments of Australia

Mud crabs, Scylla serrata, were sampled from four estuaries (the Normanby, Herbert, Burdekin and Fitzroy Rivers) along the coast of northern Queensland, Australia, representing a pollution gradient from low to high contamination based upon previous chemical monitoring. Four biomarkers; glutathione-S-transferase (GST) activity, cholinesterase (ChE) inhibition and the urinary metabolite concentrations of naphthalene (NPH) and benzo-a-pyrene (BaP) were evaluated in S. serrata hepatopancreas, haemolymph and urine. Site-specific evidence of elevated GST activity and BaP metabolite concentrations and significant ChE inhibition was detected. Biomarker responses from this field study provide evidence of contaminant exposure of S. serrata from river estuaries along the coast of northern Queensland and indicate that further investigation is warranted. Based on the current results, and with further work on characterising the dose-response and seasonal variation in this species, mud crabs have great potential as indicator species for water quality and ecosystem monitoring programs across tropical coastal regions of Australia.