Water quality in the Great Barrier Reef region: responses of mangrove, seagrass and macroalgal communities

Marine plants colonise several interconnected ecosystems in the Great Barrier Reef region including tidal wetlands, seagrass meadows and coral reefs. Water quality in some coastal areas is declining from human activities. Losses of mangrove and other tidal wetland communities are mostly the result of reclamation for coastal development of estuaries, e.g. for residential use, port infrastructure or marina development, and result in river bank destabilisation, deterioration of water clarity and loss of key coastal marine habitat. Coastal seagrass meadows are characterized by small ephemeral species. They are disturbed by increased turbidity after extreme flood events, but generally recover. There is no evidence of an overall seagrass decline or expansion. High nutrient and substrate availability and low grazing pressure on nearshore reefs have lead to changed benthic communities with high macroalgal abundance. Conservation and management of GBR macrophytes and their ecosystems is hampered by scarce ecological knowledge across macrophyte community types.     

Identification of the natural product 2,3,4,5-tetrabromo-1-methylpyrrole in Pacific biota, passive samplers and seagrass from Queensland, Australia

Halogenated natural products (HNPs) are frequently detected in marine organisms. High HNP concentrations have previously been found in marine mammals from the Great Barrier Reef, Australia, including in the blubber of herbivorous dugongs (Dugong dugon). To identify the source of HNPs we initially focused on the analysis of Australian seagrass (Halophila ovalis) which serves as the principal food source for dugongs. GC/MS analysis of the seagrass indicated the presence of several organobromine compounds. One compound was identified as 2,3,4,5-tetrabromo-1-methylpyrrole (TBMP) by synthesis. Subsequent analysis of semipermeable membrane devices demonstrated that the photo-sensitive TBMP is widespread in the Great Barrier Reef (Queensland, Australia). The detection of larger TBMP concentrations in fish fillets from Chile and traces in mussels from New Zealand indicated that this potential HNP may be distributed throughout the Southern Pacific Ocean.     

Water Quality in the Great Barrier Reef World Heritage Area: Past Perspectives, Current Issues and New Research Directions

Elevated sediment and nutrient concentrations have long been regarded as the pre-eminent water quality threats to the Great Barrier Reef, with the potential risk posed by other pollutants such as heavy metals, persistent chlorohydrocarbons, PCBs and petroleum related compounds considered to be of lesser consequence. However, the management focus on these latter types of pollutants has recently shifted to acknowledge the potential impact posed by diuron, dioxins, dieldrin, and mercury and cadmium concentrations detected in sediments and biota along the Great Barrier Reef and southern Queensland coastline. In general, these threats originate from areas dominated by intensive cropping agriculture and are exacerbated by high rainfall and erosion rates in the wet tropics region of the Queensland coast. Maintenance of long-term monitoring programmes, which utilize innovative data acquisition techniques will enable assessment of change in environmentally relevant pollutant concentrations over time. However, improved land management practices, which include an immediate minimization of vegetation clearance and responsible use of pesticides and fertilizers in Queensland are essential if water quality in the Great Barrier Reef World Heritage Area is to be maintained and protected.     

Pesticide and Herbicide Residues in Sediments and Seagrasses from the Great Barrier Reef World Heritage Area and Queensland Coast

Pesticides and herbicides including organochlorine compounds have had extensive current and past application by Queensland's intensive coastal agriculture industry as well as for a wide range of domestic, public health and agricultural purposes in urban areas. The persistent nature of these types of compounds together with possible continued illegal use of banned organochlorine compounds raises the potential for continued long-term chronic exposure to plants and animals of the Great Barrier Reef. Sediment and seagrass samples were collected from 16 intertidal and 25 subtidal sampling sites between Torres Strait and Townsville, near Mackay and Gladstone, and in Hervey and Moreton Bays in 1997 and 1998 and analysed for pesticide and herbicide residues. Low levels of atrazine (0.1–0.3 μg kg⁻¹), diuron (0.2–10.1 μg kg⁻¹), lindane (0.08–0.19 μg kg⁻¹), dieldrin (0.05–0.37 μg kg⁻¹), DDT (0.05–0.26 μg kg⁻¹), and DDE (0.05–0.26 μg kg⁻¹) were detected in sediments and/or seagrasses. Contaminants were mainly detected in samples collected along the high rainfall, tropical coast between Townsville and Port Douglas and in Moreton Bay. Of the contaminants detected, the herbicide diuron is of most concern as the concentrations detected have some potential to impact local seagrass communities.     

Variation in biogeochemical parameters across intertidal seagrass meadows in the central Great Barrier Reef region

This survey provides baseline information on sediment characteristics, porewater, adsorbed and plant tissue nutrients from intertidal coastal seagrass meadows in the central region of the Great Barrier Reef World Heritage Area. Data collected from 11 locations, representative of intertidal coastal seagrass beds across the region, indicated that the chemical environment was typical of other tropical intertidal areas. Results using two different extraction methods highlight the need for caution when choosing an adsorbed phosphate extraction technique, as sediment type affects the analytical outcome. Comparison with published values indicates that the range of nutrient parameters measured is equivalent to those measured across tropical systems globally. However, the nutrient values in seagrass leaves and their molar ratios for Halophila ovalis and Halodule uninervis were much higher than the values from the literature from this and other regions, obtained using the same techniques, suggesting that these species act as nutrient sponges, in contrast with Zostera capricorni. The limited historical data from this region suggest that the nitrogen and phosphorus content of seagrass leaves has increased since the 1970s concomitant with changing land use practice.     

An assessment of residence times of land-sourced contaminants in the Great Barrier Reef lagoon and the implications for management and reef recovery

We argue that the residence times of key pollutants exported to the Great Barrier Reef (GBR) are greater in the GBR lagoon than those of the water itself, in contradiction to some previous assumptions. Adverse effects of the pollutant discharge will be greater and longer lasting than previously considered, in turn requiring stronger or more urgent action to remediate land practices. Residence times of fine sediments, nitrogen and phosphorus, pesticides and trace metals are suggested to be from years to decades in the GBR lagoon and highly likely to be greater than the residence time of water, estimated at around 15-365days. The recovery of corals and seagrass in the central region of the GBR following current land-use remediation in the catchment depends on the residence time of these contaminants. Ecohydrological modeling suggests that this recovery may take decades even with adequate levels of improved land management practices.     

Terrestrial pollutant runoff to the Great Barrier Reef: An update of issues, priorities and management responses

The Great Barrier Reef (GBR) is a World Heritage Area and contains extensive areas of coral reef, seagrass meadows and fisheries resources. From adjacent catchments, numerous rivers discharge pollutants from agricultural, urban, mining and industrial activity. Pollutant sources have been identified and include suspended sediment from erosion in cattle grazing areas; nitrate from fertiliser application on crop lands; and herbicides from various land uses. The fate and effects of these pollutants in the receiving marine environment are relatively well understood. The Australian and Queensland Governments responded to the concerns of pollution of the GBR from catchment runoff with a plan to address this issue in 2003 (Reef Plan; updated 2009), incentive-based voluntary management initiatives in 2007 (Reef Rescue) and a State regulatory approach in 2009, the Reef Protection Package. This paper reviews new research relevant to the catchment to GBR continuum and evaluates the appropriateness of current management responses.     

Water quality monitoring: a combined approach to investigate gradients of change in the Great Barrier Reef, Australia

For the managers of a region as large as the Great Barrier Reef, it is a challenge to develop a cost effective monitoring program, with appropriate temporal and spatial resolution to detect changes in water quality. The current study compares water quality data (phytoplankton abundance and water clarity) from remote sensing with field sampling (continuous underway profiles of water quality and fixed site sampling) at different spatial scales in the Great Barrier Reef north of Mackay (20 degrees S). Five transects (20-30 km long) were conducted from clean oceanic water to the turbid waters adjacent to the mainland. The different data sources demonstrated high correlations when compared on a similar spatial scale (18 fixed sites). However, each data source also contributed unique information that could not be obtained by the other techniques. A combination of remote sensing, underway sampling and fixed stations will deliver the best spatial and temporal monitoring of water quality in the Great Barrier Reef.     

Organochlorine, Heavy Metal and Polyaromatic Hydrocarbon Pollutant Concentrations in the Great Barrier Reef (Australia) Environment: a Review

Past monitoring of heavy metals, organochlorine compounds and polyaromatic hydrocarbons (PAHs) has found that pollutant concentrations are generally low within the Great Barrier Reef Marine Park and World Heritage Area and are indicative of a relatively unpolluted environment. The exceptions are sites that are adjacent to human activity such as ports and harbours, urban centres and areas adjacent to intensive agricultural activity. These sites have elevated concentrations of a range of pollutants. Concentrations of dioxins have also been found to be elevated in marine park sediments. Elevated pollutant concentrations are generally the consequence of effluent discharge, urban stormwater, and agricultural and industrial runoff. However, a majority of Great Barrier Reef pollutant data are now dated, and contemporary information is required concerning the distribution and impact of pollutants in the Queensland marine environment. The utility of specialized monitoring tools such as biomarkers for tropical marine environments urgently needs to be examined. With this information, appropriate risk assessment and monitoring can be implemented and effective management strategies developed to protect tropical marine ecosystems including the Great Barrier Reef.     

Temperature extremes reduce seagrass growth and induce mortality

Extreme heating (up to 43 °C measured from five-year temperature records) occurs in shallow coastal seagrass meadows of the Great Barrier Reef at low tide. We measured effective quantum yield (_?PSII${?}_{\text{PSII}}$), growth, senescence and mortality in four tropical seagrasses to experimental short-duration (2.5 h) spikes in water temperature to 35 °C, 40 °C and 43 °C, for 6 days followed by one day at ambient temperature. Increasing temperature to 35 °C had positive effects on _?PSII${?}_{\text{PSII}}$ (the magnitude varied between days and was highly correlated with PPFD), with no effects on growth or mortality. 40 °C represented a critical threshold as there were strong species differences and there was a large impact on growth and mortality. At 43 °C there was complete mortality after 2–3 days. These findings indicate that increasing duration (more days in a row) of thermal events above 40 °C is likely to affect the ecological function of tropical seagrass meadows.     

Herbicides implicated as the cause of severe mangrove dieback in the Mackay region, NE Australia: consequences for marine plant habitats of the GBR World Heritage Area

Herbicides, particularly diuron, were correlated with severe and widespread dieback of the dominant mangrove, Avicennia marina (Forsk.) Vierh. var. eucalyptifolia (Val.) N.C. Duke (Avicenniaceae), its reduced canopy condition, and declines in seedling health within three neighbouring estuaries in the Mackay region of NE Australia. This unusual species-specific dieback, first observed in the early 1990s, had gotten notably worse by 2002 to affect >30 km(2) of mangroves in at least five adjacent estuaries in the region. Over the past century, agricultural production has responded well to the demands of increasing population with improvements in farm efficiency assisted by significant increases in the use of agricultural chemicals. However, with regular and episodic river flow events, these chemicals have sometimes found their way into estuarine and nearshore water and sediments where their effects on marine habitats have been largely unquantified. Investigations over the last three years in the Mackay region provide compelling evidence of diuron, and possibly other agricultural herbicides, as the most likely cause of the severe and widespread mangrove dieback. The likely consequences of such dieback included declines in coastal water quality with increased turbidity, nutrients and sediment deposition, as well as further dispersal of the toxic chemicals. The implications of such findings are immense since they describe not only the serious deterioration of protected and beneficial mangrove habitat but also the potential for significant direct and indirect effects on other highly-valued estuarine and marine habitats in the region, including seagrass beds and coral reefs of the Great Barrier Reef lagoon. This article reviews all key findings and observations to date and describes the essential correlative and causative evidence.     

The Effect of the Great Barrier Reef on the Propagation of the 2007 Solomon Islands Tsunami Recorded in Northeastern Australia

The effect of offshore coral reefs on the impact from a tsunami remains controversial. For example, field surveys after the 2004 Indian Ocean tsunami indicate that the energy of the tsunami was reduced by natural coral reef barriers in Sri Lanka, but there was no indication that coral reefs off Banda Aceh, Indonesia had any effect on the tsunami. In this paper, we investigate whether the Great Barrier Reef (GBR) offshore Queensland, Australia, may have weakened the tsunami impact from the 2007 Solomon Islands earthquake. The fault slip distribution of the 2007 Solomon Islands earthquake was firstly obtained by teleseismic inversion. The tsunami was then propagated to shallow water just offshore the coast by solving the linear shallow water equations using a staggered grid finite-difference method. We used a relatively high resolution (approximately 250 m) bathymetric grid for the region just off the coast containing the reef. The tsunami waveforms recorded at tide gauge stations along the Australian coast were then compared to the results from the tsunami simulation when using both the realistic 250 m resolution bathymetry and with two grids having fictitious bathymetry: One in which the the GBR has been replaced by a smooth interpolation from depths outside the GBR to the coast (the “No GBR” grid), and one in which the GBR has been replaced by a flat plane at a depth equal to the mean water depth of the GBR (the “Average GBR” grid). From the comparison between the synthetic waveforms both with and without the Great Barrier Reef, we found that the Great Barrier Reef significantly weakened the tsunami impact. According to our model, the coral reefs delayed the tsunami arrival time by 5–10 minutes, decreased the amplitude of the first tsunami pulse to half or less, and lengthened the period of the tsunami.     

Fine sediment and nutrient dynamics related to particle size and floc formation in a Burdekin River flood plume, Australia

The extreme 2010-2011 wet season resulted in highly elevated Burdekin River discharge into the Great Barrier Reef lagoon for a period of 200 days, resulting in a large flood plume extending >50km offshore and >100km north during peak conditions. Export of suspended sediment was dominated by clay and fine silt fractions and most sediment initially settled within ～10km of the river mouth. Biologically-mediated flocculation of these particles enhanced deposition in the initial low salinity zone. Fine silt and clay particles and nutrients remaining in suspension, were carried as far as 100km northward from the mouth, binding with planktonic and transparent exopolymer particulate matter to form large floc aggregates (muddy marine snow). These aggregates, due to their sticky nature, likely pose a risk to benthic organisms e.g. coral and seagrass through smothering, and also by contributing to increased turbidity during wind-induced resuspension events.     

Environmental impacts of dredging on seagrasses: a review

Main potential impacts on seagrasses from dredging and sand mining include physical removal and/or burial of vegetation and effects of increased turbidity and sedimentation. For seagrasses, the critical threshold for turbidity and sedimentation, as well as the duration that seagrasses can survive periods of high turbidity or excessive sedimentation vary greatly among species. Larger, slow-growing climax species with substantial carbohydrate reserves show greater resilience to such events than smaller opportunistic species, but the latter display much faster post-dredging recovery when water quality conditions return to their original state. A review of 45 case studies worldwide, accounting for a total loss of 21,023 ha of seagrass vegetation due to dredging, is indicative of the scale of the impact of dredging on seagrasses. In recent years, tighter control in the form of strict regulations, proper enforcement and monitoring, and mitigating measures together with proper impact assessment and development of new environmental dredging techniques help to prevent or minimize adverse impacts on seagrasses. Costs of such measures are difficult to estimate, but seem negligible in comparison with costs of seagrass restoration programmes, which are typically small-scale in approach and often have limited success. Copying of dredging criteria used in one geographic area to a dredging operation in another may in some cases lead to exaggerated limitations resulting in unnecessary costs and delays in dredging operations, or in other cases could prove damaging to seagrass ecosystems. Meaningful criteria to limit the extent and turbidity of dredging plumes and their effects will always require site-specific evaluations and should take into account the natural variability of local background turbidity.     

Assessing the additive risks of PSII herbicide exposure to the Great Barrier Reef

Herbicide residues have been measured in the Great Barrier Reef lagoon at concentrations which have the potential to harm marine plant communities. Monitoring on the Great Barrier Reef lagoon following wet season discharge show that 80% of the time when herbicides are detected, more than one are present. These herbicides have been shown to act in an additive manner with regards to photosystem-II inhibition. In this study, the area of the Great Barrier Reef considered to be at risk from herbicides is compared when exposures are considered for each herbicide individually and also for herbicide mixtures. Two normalisation indices for herbicide mixtures were calculated based on current guidelines and PSII inhibition thresholds. The results show that the area of risk for most regions is greatly increased under the proposed additive PSII inhibition threshold and that the resilience of this important ecosystem could be reduced by exposure to these herbicides.     

Water quality in the inshore Great Barrier Reef lagoon: Implications for long-term monitoring and management

Coastal and inshore areas of the Great Barrier Reef lagoon receive substantial amounts of material from adjacent developed catchments, which can affect the ecological integrity of coral reefs and other inshore ecosystems. A 5-year water quality monitoring dataset provides a 'base range' of water quality conditions for the inshore GBR lagoon and illustrates the considerable temporal and spatial variability in this system. Typical at many sites were high turbidity levels and elevated chlorophyll a and phosphorus concentrations, especially close to river mouths. Water quality variability was mainly driven by seasonal processes such as river floods and sporadic wind-driven resuspension as well as by regional differences such as land use. Extreme events, such as floods, caused large and sustained increases in water quality variables. Given the highly variable climate in the GBR region, long-term monitoring of marine water quality will be essential to detect future changes due to improved catchment management.     

Dynamics of herbicide transport and partitioning under event flow conditions in the lower Burdekin region, Australia

This study examined the temporal variability in herbicide delivery to the Great Barrier Reef (GBR) lagoon (Australia) from one of the GBR catchment's major sugarcane growing regions. Annual loads of measured herbicides were consistently in the order of 200+kg. Atrazine, it's degradate desethylatrazine, and diuron contributed approximately 90% of annual herbicide load, with early 'first-flush' events accounting for the majority of herbicide loads leaving the catchment. Assessment of herbicide water-sediment partitioning in flood runoff highlighted the majority of herbicides were transported in predominantly dissolved form, although a considerable fraction of diuron was transported in particulate-bound form (ca. 33%). Diuron was also the herbicide demonstrating the highest concentrations and frequency of detection in sediments collected from catchment waterways and adjacent estuarine-marine environments, an outcome aligning with previous research. Herbicide physico-chemical properties appear to play a crucial role in partitioning between water column and sediment habitat types in GBR receiving ecosystems.     

Alkalinity and dissolved inorganic carbon exports from tropical and subtropical river catchments discharging to the Great Barrier Reef,Australia

Dissolved inorganic carbon (DIC) transport by rivers is an important control on the pH and carbonate chemistry of the coastal ocean. Here, we combine DIC and total alkalinity (TAlk) concentrations from four tropical rivers of the Great Barrier Reef region in Australia with daily river discharge to quantify annual river loads and export rates. DIC in the four rivers ranged from 284 to 2,639 μmol kg⁻¹ and TAlk ranged from 220 to 2,612 μmol kg⁻¹. DIC:TAlk ratios were mostly greater than one suggesting elevated exports of free [CO₂*]. This was pronounced in the Johnstone and Herbert rivers of the tropical wet north. The largest annual loads were transported in the two large river catchments of the southern Great Barrier Reef region, the Fitzroy and Burdekin rivers. The carbon stable isotopic composition of DIC suggests that carbonate weathering was the dominant source of DIC in the southern rivers, and silicate weathering was likely a source of DIC in the northern Wet Tropics rivers. Annual loads and export rates were strongly driven by precipitation and discharge patterns, the occurrence of tropical cyclones, and associated flooding events, as well as distinct seasonal dry and wet periods. As such, short-lived hydrological events and long-term (seasonal and inter-annual) variation of DIC and TAlk that are pronounced in rivers of the tropical and subtropical wet and dry climate zone should be accounted for when assessing inorganic carbon loads to the coastal ocean and the potential to buffer against or accelerate ocean acidification.     

Contrasting recovery of shallow and deep water seagrass communities following climate associated losses in tropical north Queensland,Australia

Tropical seagrass decline and recovery from severe storm impacts was assessed via quarterly measurements of seagrass biomass, species composition and experimental investigations of recovery in north Queensland. Shallow and deep seagrass meadows suffered major declines. Significant recovery in the two years following loss only occurred at deeper sites. Halophila spp. in deep water areas had a high capacity for recovery through the availability of seed banks. In contrast, the shallow species did not recover quickly from experimental disturbance, had poor seed reserves and relied on asexual propagation. The potential for shallow species to recover rapidly from widespread losses was limited as seed banks were limited or non-existent. Understanding inter- and intra-specific differences in seagrass recovery and how this interacts with location is critical to predict the consequences of climate events to tropical seagrasses. This is especially important as more frequent severe storms are predicted as a consequence of climate change.     

Responses of four Indo-West Pacific seagrass species to shading

Seagrasses of the Great Barrier Reef predominantly occur in coastal regions where terrestrial inputs modify water quality and photosynthetic light is highly variable. Responses to shading were tested for Cymodocea serrulata, Halodule uninervis, Thalassia hemprichii and Zostera muelleri. In aquaria, four light treatments - high (66% surface light), moderate (31%), low (14%) and very low light (1%) treatments - were applied for 102d. Stress responses in the low and very low light treatments occurred in the following sequence: metabolic and physiological changes (reduced growth, increased pigment concentrations and photosynthetic efficiency); shedding (leaf loss, shoot loss) and production of new, altered tissue (leaves with reduced length, width and thickness). Complete shoot loss was projected after 76 (Z. muelleri) to 130d (T. hemprichii). Responses were slower in the low than in the very low treatment, therefore, efforts to minimize water quality degradation will be rewarded with delayed impacts to seagrasses.