Estimation of vegetation LAI from hyperspectral reflectance data: Effects of soil type and plant architecture

The retrieval of canopy biophysical variables is known to be affected by confounding factors such as plant type and background reflectance. The effects of soil type and plant architecture on the retrieval of vegetation leaf area index (LAI) from hyperspectral data were assessed in this study. In situ measurements of LAI were related to reflectances in the red and near-infrared and also to five widely used spectral vegetation indices (VIs). The study confirmed that the spectral contrast between leaves and soil background determines the strength of the LAI–reflectance relationship. It was shown that within a given vegetation species, the optimum spectral regions for LAI estimation were similar across the investigated VIs, indicating that the various VIs are basically summarizing the same spectral information for a given vegetation species. Cross-validated results revealed that, narrow-band PVI was less influenced by soil background effects (0.15 ≤ RMSE_cv ≤ 0.56). The results suggest that, when using remote sensing VIs for LAI estimation, not only is the choice of VI of importance but also prior knowledge of plant architecture and soil background. Hence, some kind of landscape stratification is required before using hyperspectral imagery for large-scale mapping of vegetation biophysical variables.     

不同钾素处理春玉米叶片营养元素含量变化及其光谱响应

目的是研究不同钾营养水平春玉米典型生育期叶片的光谱响应,探索叶片内营养成分与叶片光谱反射率的相关性。方法是设置了不同梯度钾处理的盆栽试验,按玉米生育期进行光谱测定和取样分析。结果,通过对不同钾处理间玉米叶片养分含量的差异性分析表明,随着施钾的提高,叶片钾含量差异性达到显著水平。分析不同钾营养水平不同生育时期春玉米叶片光谱反射率与叶片钾含量的相关关系,并建立了喇叭口期利用叶片光谱反射率估测叶片钾含量的数学模型;以及分析了该处理下喇叭口期叶片内水分、叶绿素、氮、磷、钙、镁、锌、锰、铜、铁含量与叶片光谱反射率的相关性。结果表明：不同生育时期叶片钾含量与其光谱反射率的相关关系在光谱维方向存在明显差别,730—930nm和960—1100nm两波段为春玉米喇叭口期评价钾营养状况的敏感波段,光谱变量R767＋R1057,（R767＋R1057） /（logR767＋logR1057）和（R767-R1057） /（logR767-logR1057）均能很好的预测喇叭口期叶片钾含量;该时期叶片内不同成分与光谱反射率相关分析表明：550nm,710nm,950nm三波段处是各个相关曲线的突变点;叶片内各成分间高度相关的,它们的光谱相关曲线趋势也极为一致或对称。     

利用多时相的高光谱航空图像监测冬小麦条锈病

冬小麦发生锈病 ,叶绿素被大量破坏 ,水分蒸滕量大大增加 ,叶片细胞大小、形态、叶片结构发生了改变 ,从而改变了叶片和冠层的光学特性 ,使得遥感探测与评价成为可能。利用多时相的高光谱航空飞行图像数据 ,了解、分析和发现条锈病病害对作物光谱的影响及其光谱特征 ;设计了病害光谱指数 ,成功地监测了冬小麦条锈病病害程度与范围。对比 3个生育期的条锈病与正常生长冬小麦的PHI图像光谱及光谱特征 ,发现 :5 6 0— 6 70nm黄边、红谷波段 ,条锈病病害冬小麦的冠层反射率高于正常生长的冬小麦光谱反射率 ;近红外波段 ,条锈病病害的冠层反射率低于正常生长的冬小麦光谱反射率 ;条锈病冬小麦冠层光谱红谷吸收深度和绿峰的反射峰高度都会减小     

Leaf to canopy upscaling approach affects the estimation of canopy traits

In remote sensing applications, leaf traits are often upscaled to canopy level using sunlit leaf samples collected from the upper canopy. The implicit assumption is that the top of canopy foliage material dominates canopy reflectance and the variability in leaf traits across the canopy is very small. However, the effect of different approaches of upscaling leaf traits to canopy level on model performance and estimation accuracy remains poorly understood. This is especially important in short or sparse canopies where foliage material from the lower canopy potentially contributes to the canopy reflectance. The principal aim of this study is to examine the effect of different approaches when upscaling leaf traits to canopy level on model performance and estimation accuracy using spectral measurements (in-situ canopy hyperspectral and simulated Sentinel-2 data) in short woody vegetation. To achieve this, we measured foliar nitrogen (N), leaf mass per area (LMA), foliar chlorophyll and carbon together with leaf area index (LAI) at three vertical canopy layers (lower, middle and upper) along the plant stem in a controlled laboratory environment. We then upscaled the leaf traits to canopy level by multiplying leaf traits by LAI based on different combinations of the three canopy layers. Concurrently, in-situ canopy reflectance was measured using an ASD FieldSpec-3 Pro FR spectrometer, and the canopy traits were related to in-situ spectral measurements using partial least square regression (PLSR). The PLSR models were cross-validated based on repeated k-fold, and the normalized root mean square errors (nRMSE_cv) obtained from each upscaling approach were compared using one-way analysis of variance (ANOVA) followed by Tukey’s post hoc test. Results of the study showed that leaf-to-canopy upscaling approaches that consider the contribution of leaf traits from the exposed upper canopy layer together with the shaded middle canopy layer yield significantly (p < 0.05) lower error (nRMSE_cv < 0.2 for canopy N, LMA and carbon) as well as high explained variance (R² > 0.71) for both in-situ hyperspectral and simulated Sentinel-2 data. The widely-used upscaling approach that considers only leaf traits from the upper illuminated canopy layer yielded a relatively high error (nRMSE_cv>0.2) and lower explained variance (R² < 0.71) for canopy N, LMA and carbon. In contrast, canopy chlorophyll upscaled based on leaf samples collected from the upper canopy and total canopy LAI exhibited a more accurate relationship with spectral measurements compared with other upscaling approaches. Results of this study demonstrate that leaf to canopy upscaling approaches have a profound effect on canopy traits estimation for both in-situ hyperspectral measurements and simulated Sentinel-2 data in short woody vegetation. These findings have implications for field sampling protocols of leaf traits measurement as well as upscaling leaf traits to canopy level especially in short and less foliated vegetation where leaves from the lower canopy contribute to the canopy reflectance.     

Estimation of chlorophyll fluorescence under natural illumination from hyperspectral data

This paper reports a series of laboratory and field measurements of spectral reflectance under artificial and natural light conditions which demonstrate that effects of natural chlorophyll fluorescence are observable in the reflectance red edge spectral region. These are results from the progress made to link physiologically-based indicators to optical indices from hyperspectral remote sensing in the Bioindicators of Forest Sustainability Project. This study is carried out on twelve sites of Acer saccharum M. in the Algoma Region, Ontario (Canada), where field measurements, laboratory-simulation experiments, and hyperspectral CASI imagery have been carried out in 1997, 1998, 1999 and 2000 campaigns. Leaf samples from the study sites have been used for reflectance and transmittance measurements with the Li-Cor Model 1800 integrating sphere apparatus coupled to an Ocean Optics Model ST1000 fibre spectrometer in which the same leaves are illuminated alternatively with and without fluorescence-exciting radiation. A study of the diurnal change in leaf reflectance spectra, combined with fluorescence measurements with the PAM-2000 Fluorometer show that the difference spectra are consistent with observed diurnal changes in steady-state fluorescence. Small canopies of Acer saccharum M. have been used for laboratory measurements with the CASI hyperspectral sensor, and under natural light conditions with a fibre spectrometer in diurnal trials, in which the variation of measured reflectance is shown experimentally to be consistent with a fluorescence signature imposed on the inherent leaf reflectance signature. Such reflectance changes due to CF are measurable under natural illumination conditions, although airborne experiments with the CASI hyperspectral sensor produced promising but less convincing results in two diurnal experiments carried out in 1999 and 2000, where small variations of reflectance due to the effect of CF were observed.     

重金属铜污染植被光谱响应特征研究

重金属铜污染植被的反射光谱特性会发生明显改变。在本研究中,采用不同程度的铜污染土壤作为培养基质,选择春小麦、上海青两种农作物进行铜胁迫实验,获取了4个不同生育期、10个不同铜污染强度下的植被叶片的反射光谱,并采用铜污染叶片7个特征波段和光谱角的方法研究了铜污染叶片的光谱特征。结果表明,铜污染叶片光谱差异与作物时期和作物类型有关,可以采用叶片光谱角描述铜污染叶片与健康叶片的光谱差异。该方法只需与阈值做简单的比较,方法简便易行,而且对轻度及重度铜污染十分敏感。叶片光谱辐射传输模型反演结果表明铜污染叶片内部结构参数N明显变大,这也证明了铜污染使叶片内部结构更加散乱无序。在此基础上进一步建立了N与红肩处反射率值的线性关系,相关系数为0.978。本文为铜污染叶片光谱反射模型的建立提供了初步的数据基础与理论支持。     

Spatially Explicit Estimation of Leaf Area Index Using EO-1 Hyperion and Landsat ETM+ Data: Implications of Spectral Bandwidth and Shortwave Infrared Data on Prediction Accuracy in a Tropical Montane Environment

This study evaluated the utility of narrowband (EO-1 Hyperion) and broadband (Landsat ETM+) remote sensing data for the estimation of leaf area index (LAI) in a tropical environment in Sulawesi, Indonesia. LAI was inferred from canopy gap fraction measurements taken in natural tropical forest and cocoa plantations. Single and multiple spectral bands and spectral indices were used as predictor variables in reduced major axis (RMA) and ordinary least squares (OLS) regression models. The predictive power of most regression models was notably higher when employing narrowband data instead of broadband data. Highly significant relationships between LAI and spectral reflectance were observed near the red-edge region and in most shortwave infrared (SWIR) bands. In contrast to most near-infrared (NIR) narrow bands, the correlation between SWIR reflectance and LAI was not confounded when including both vegetation types and did not suffer from saturation. The results demonstrate that leaf area index of a challenging tropical environment can be estimated with satisfactory accuracy from hyperspectral remote sensing data.     

Photosynthetic bark: Use of chlorophyll absorption continuum index to estimate Boswellia papyrifera bark chlorophyll content

Quantification of chlorophyll content provides useful insight into the physiological performance of plants. Several leaf chlorophyll estimation techniques, using hyperspectral instruments, are available. However, to our knowledge, a non-destructive bark chlorophyll estimation technique is not available. We set out to assess Boswellia papyrifera tree bark chlorophyll content and to provide an appropriate bark chlorophyll estimation technique using hyperspectral remote sensing techniques. In contrast to the leaves, the bark of B. papyrifera has several outer layers masking the inner photosynthetic bark layer. Thus, our interest includes understanding how much light energy is transmitted to the photosynthetic inner bark and to what extent the inner photosynthetic bark chlorophyll activity could be remotely sensed during both the wet and the dry season. In this study, chlorophyll estimation using the chlorophyll absorption continuum index (CACI) yielded a higher R² (0.87) than others indices and methods, such as the use of single band, simple ratios, normalized differences, and conventional red edge position (REP) based estimation techniques. The chlorophyll absorption continuum index approach considers the increase or widening in area of the chlorophyll absorption region, attributed to high concentrations of chlorophyll causing spectral shifts in both the yellow and the red edge. During the wet season B. papyrifera trees contain more bark layers than during the dry season. Having less bark layers during the dry season (leaf off condition) is an advantage for the plants as then their inner photosynthetic bark is more exposed to light, enabling them to trap light energy. It is concluded that B. papyrifera bark chlorophyll content can be reliably estimated using the chlorophyll absorption continuum index analysis. Further research on the use of bark signatures is recommended, in order to discriminate the deciduous B. papyrifera from other species during the dry season.     

Use of field reflectance data for crop mapping using airborne hyperspectral image

Recent developments in hyperspectral remote sensing technologies enable acquisition of image with high spectral resolution, which is typical to the laboratory or in situ reflectance measurements. There has been an increasing interest in the utilization of in situ reference reflectance spectra for rapid and repeated mapping of various surface features. Here we examined the prospect of classifying airborne hyperspectral image using field reflectance spectra as the training data for crop mapping. Canopy level field reflectance measurements of some important agricultural crops, i.e. alfalfa, winter barley, winter rape, winter rye, and winter wheat collected during four consecutive growing seasons are used for the classification of a HyMAP image acquired for a separate location by (1) mixture tuned matched filtering (MTMF), (2) spectral feature fitting (SFF), and (3) spectral angle mapper (SAM) methods. In order to answer a general research question “what is the prospect of using independent reference reflectance spectra for image classification”, while focussing on the crop classification, the results indicate distinct aspects. On the one hand, field reflectance spectra of winter rape and alfalfa demonstrate excellent crop discrimination and spectral matching with the image across the growing seasons. On the other hand, significant spectral confusion detected among the winter barley, winter rye, and winter wheat rule out the possibility of existence of a meaningful spectral matching between field reflectance spectra and image. While supporting the current notion of “non-existence of characteristic reflectance spectral signatures for vegetation”, results indicate that there exist some crops whose spectral signatures are similar to characteristic spectral signatures with possibility of using them in image classification.     

Wavelength selection and spectral discrimination for paddy rice, with laboratory measurements of hyperspectral leaf reflectance

The objective of this research is to select the most sensitive wavelengths for the discrimination of the imperceptible spectral variations of paddy rice under different cultivation conditions. The paddy rice was cultivated under four different nitrogen cultivation levels and three water irrigation levels. There are 2151 hyperspectral wavelengths available, both in hyperspectral reflectance and energy space transformed spectral data. Based on these two data sets, the principal component analysis (PCA) and band-band correlation methods were used to select significant wavelengths with no reference to leaf biochemical properties, while the partial least squares (PLS) method assessed the contribution of each narrow band to leaf biochemical content associated with each loading weight across the nitrogen and water stresses. Moreover, several significant narrow bands and other broad bands were selected to establish eight kinds of wavelength (broad-band) combinations, focusing on comparing the performance of the narrow-band combinations instead of broad-band combinations for rice supervising applications. Finally, to investigate the capability of the selected wavelengths to diagnose the stress conditions across the different cultivation levels, four selected narrow bands (552, 675, 705 and 776 nm) were calculated and compared between nitrogen-stressed and non-stressed rice leaves using linear discriminant analysis (LDA). Also, wavelengths of 1158, 1378 and 1965 nm were identified as the most useful bands to diagnose the stress condition across three irrigation levels. Results indicated that good discrimination was achieved. Overall, the narrow bands based on hyperspectral reflectance data appear to have great potential for discriminating rice of differing cultivation conditions and for detecting stress in rice vegetation; these selected wavelengths also have great potential use for the designing of future sensors.     

Using multi-date high spectral resolution data to assess the physiological status of macroscopically undamaged foliage on a regional scale

Forests play an important role in regulation of the global climate; moreover, they provide human beings with a whole range of ecosystem services. Forest health and ecosystem functioning have been influenced by anthropogenic activities and their consequences, such as air pollution, surface mining, heavy metal contamination, and other biotic and abiotic stress factors, which had an especially serious effect on central Europe. Many aspects of the physiological state of trees are more or less related to the concentrations of two main groups of leaf photosynthetic pigments: chlorophylls and carotenoids. Therefore, their contents can be used as non-specific indicators of the actual tree physiological status, stress and the pre-visible tree damage. Variations in leaf biochemical composition affect foliar optical properties and can be assessed remotely using high spectral resolution data (hyperspectral data). These data were successfully used in earlier studies to detect vegetation stress and damage. However, only a few approaches have dealt with the use of hyperspectral remote sensing to assess vegetation physiological status on a regional scale. Moreover, little or no research has been done on assessing vegetation health while utilizing multi-date hyperspectral images.In this study, the method for assessing forest health conditions using optical indices retrieved from hyperspectral data was applied to the two temporal HyMap date sets acquired in 07/2009 and 08/2010 to detect stress for the Norway spruce forests in Sokolov, NW Bohemia, a region affected by long-term extensive mining. The classification results were validated by ground truth data (total chlorophyll – Cab, carotenoids – Car and carotenoid to chlorophyll ratio – Car/Cab) and were associated with the geochemical conditions of the forest stands. Both biochemical analysis of the sampled foliage and classification of 2009 and 2010 hyperspectral image identified the same sites affected by vegetation stress. In addition to higher Car/Cab, which enabled detection of the stressed trees using hyperspectral image data, these sites showed critically low pH and lower values for the macronutrient parameters in both organic horizons and, in addition, both sites exhibit critically low base cation to aluminum ratios (Bc/Al) for lower organic and top mineral (0–20 cm) soil horizons.The results of this study demonstrate (i) the potential application of hyperspectral remote sensing as a rapid method of identifying tree stress prior to symptom expression, and (ii) the added value of multi-temporal approaches for hyperspectral data and its further potential for monitoring forest ecosystems.     

Retrieval of aboveground crop nitrogen content with a hybrid machine learning method

Hyperspectral acquisitions have proven to be the most informative Earth observation data source for the estimation of nitrogen (N) content, which is the main limiting nutrient for plant growth and thus agricultural production. In the past, empirical algorithms have been widely employed to retrieve information on this biochemical plant component from canopy reflectance. However, these approaches do not seek for a cause-effect relationship based on physical laws. Moreover, most studies solely relied on the correlation of chlorophyll content with nitrogen, and thus neglected the fact that most N is bound in proteins. Our study presents a hybrid retrieval method using a physically-based approach combined with machine learning regression to estimate crop N content. Within the workflow, the leaf optical properties model PROSPECT-PRO including the newly calibrated specific absorption coefficients (SAC) of proteins, was coupled with the canopy reflectance model 4SAIL to PROSAIL-PRO. The latter was then employed to generate a training database to be used for advanced probabilistic machine learning methods: a standard homoscedastic Gaussian process (GP) and a heteroscedastic GP regression that accounts for signal-to-noise relations. Both GP models have the property of providing confidence intervals for the estimates, which sets them apart from other machine learners. Moreover, a GP-based sequential backward band removal algorithm was employed to analyze the band-specific information content of PROSAIL-PRO simulated spectra for the estimation of aboveground N. Data from multiple hyperspectral field campaigns, carried out in the framework of the future satellite mission Environmental Mapping and Analysis Program (EnMAP), were exploited for validation. In these campaigns, corn and winter wheat spectra were acquired to simulate spectral EnMAP data. Moreover, destructive N measurements from leaves, stalks and fruits were collected separately to enable plant-organ-specific validation. The results showed that both GP models can provide accurate aboveground N simulations, with slightly better results of the heteroscedastic GP in terms of model testing and against in situ N measurements from leaves plus stalks, with root mean square error (RMSE) of 2.1 g/m². However, the inclusion of fruit N content for validation deteriorated the results, which can be explained by the inability of the radiation to penetrate the thick tissues of stalks, corn cobs and wheat ears. GP-based band analysis identified optimal spectral settings with ten bands mainly situated in the shortwave infrared (SWIR) spectral region. Use of well-known protein absorption bands from the literature showed comparative results. Finally, the heteroscedastic GP model was successfully applied on airborne hyperspectral data for N mapping. We conclude that GP algorithms, and in particular the heteroscedastic GP, should be implemented for global agricultural monitoring of aboveground N from future imaging spectroscopy data.     

Spectral characterization of coastal sediments using Field Spectral Libraries,Airborne Hyperspectral Images and Topographic LiDAR Data (FHyL)

Beach dune systems are important for coastal zone ecosystems as they provide natural sea defences that dissipate wave energy. Geomorphological models of this near-shore topography require site-specific sediment composition, grain size and moisture content as inputs. Hyperspectral, field radiometry and LiDAR remote sensing can be used as tools by providing synoptic maps of these properties. However, multi-remote sensing of near-shore beach images can only be interpreted if there are adequate bio-geophysical or empirical models for information extraction. Our aim was thus to model the effects of varying sediment properties on the reflectance in both field and laboratory conditions within the FHyL (Field Spectral Libraries, Airborne Hyperspectral Images and Topographic LiDAR) procedure, using a multisource dataset (airborne Hyperspectral – MIVIS and topographic LiDAR – Hawk-eye II and field radiometry). The methodology consisted of (i) acquisition of simultaneous multi-source datasets (airborne Hyperspectral – MIVIS and topographic LiDAR – Hawk-eye) (ii) hyperspectral measurements of sediment mixtures with varying physical characteristics (moisture, grain size and minerals) in field and laboratory conditions, (iii) determination and quantification of specific absorption features, and (iv) correlation between the absorption features and physical parameters cited above.Results showed the potential of hyperspectral signals to assess the effect of moisture, grain-size and mineral composition on sediment properties.     

Characterising invasive non-native Rhododendron ponticum spectra signatures with spectroradiometry in the laboratory and field: Potential for remote mapping

Compared with traditional ground surveys, remote sensing has the potential to map the spatial extent of non-native invasive species rapidly and reliably. This paper assesses the potential of spectroradiometry to distinguish and characterise the status of invasive non-native rhododendron (Rhododendron ponticum). Absolute reflectance of target plant material was measured with an ASD Fieldspec Pro System under standardised laboratory conditions and in the field to characterise spectral signatures in the winter, during leaf-off conditions for woodland overstory, and in the summer when mature rhododendrons are flowering. A logistic regression model of absolute reflectance at key wavelengths (490, 550, 610, 1040 and 1490 nm) was used to determine the success of discriminating rhododendron from three other shrubby species likely to be encountered in woodlands during the winter. The logistic regression model was highly significant (p < 0.001), with 93.5% of 246 leaf sets correctly identified as rhododendron or non-rhododendron (i.e. cherry laurel (Prunus laurocerasus), holly (Ilex aquifolium), and beech (Fagus sylvatica)). Rescaling the data to emulate the spectral resolution of airborne and satellite acquired data decreased the total success rate of correctly identifying rhododendron by only 0.4%; although this error rate will likely increase for airborne or satellite data as a result of atmospheric attenuation and reduced spatial resolution. This demonstrates the potential to map bush presence using hyperspectral data and indicates the optimum spectral wavelengths required. Such information is critical to the development of successful strategic management plans to eradicate rhododendron (and the associated Phytophthora ramorum pathogen) effectively from a site.     

Spectral identification of materials by reflectance spectral library search

Spectral library search is emerging as a viable approach for material identification and mapping by reusing spectral knowledge gained from hyperspectral remote sensing across space and time. The potential of retrieving meaningful spectral material identifications in the presence of reflectance of spectra of various material types and with various similarity metrics has been assessed in this study. Test reflectance spectra of various vegetation, minerals, soils and urban material types are identified by searching through the composite reflectance spectral library obtained by combining various institutional reflectance spectral libraries. The accuracy of material identifications under various conditions: (i) in the presence of identical, similar and dissimilar spectra; (ii) in the presence of only identical and dissimilar spectra; and (iii) in the presence of only dissimilar spectra has been assessed with several similarity metrics. Results indicate the possibility of obtaining 100% accurate material identifications by library search if the spectral library contains identical spectra. However, the presence of a large number of similar spectra, despite the presence of identical spectra, is found to increase false positives, thereby reducing the accuracy of retrievals to 82% at best. Further, the accuracy of material identifications in the presence of similar spectra is similarity metric-dependent and varied from about 52% (obtained from Binary Encoding) to 82% (obtained from Normalized Spectral Similarity Score). Overall, results support the possibility of using independent reflectance spectral libraries for material identification while calling for robust spectral similarity metrics.     

Estimating chlorophyll content of crops from hyperspectral data using a normalized area over reflectance curve (NAOC)

The Normalized Area Over reflectance Curve (NAOC) is proposed as a new index for remote sensing estimation of the leaf chlorophyll content of heterogeneous areas with different crops, different canopies and different types of bare soil. This index is based on the calculation of the area over the reflectance curve obtained by high spectral resolution reflectance measurements, determined, from the integral of the red–near-infrared interval, divided by the maximum reflectance in that spectral region. For this, use has been made of the experimental data of the SPARC campaigns, where in situ measurements were made of leaf chlorophyll content, LAI and fCOVER of 9 different crops – thus, yielding 300 different values with broad variability of these biophysical parameters. In addition, Proba/CHRIS hyperspectral images were obtained simultaneously to the ground measurements. By comparing the spectra of each pixel with its experimental leaf chlorophyll value, the NAOC was proven to exhibit a linear correlation to chlorophyll content. Calculating the correlation between these variables in the 600–800 nm interval, the best correlation was obtained by computing the integral of the spectral reflectance curve between 643 and 795 nm, which practically covers the spectral range of maximum chlorophyll absorption (at around 670 nm) and maximum leaf reflectance in the infrared (750–800 nm). Based on a Proba/CHRIS image, a chlorophyll map was generated using NAOC and compared with the land-use (crops classification) map. The method yielded a leaf chlorophyll content map of the study area, comprising a large heterogeneous zone. An analysis was made to determine whether the method also serves to estimate the total chlorophyll content of a canopy, multiplying the leaf chlorophyll content by the LAI. To validate the method, use was made of the data from another campaign ((SEN2FLEX), in which measurements were made of different biophysical parameters of 7 crops, and hyperspectral images were obtained with the CASI imaging radiometer from an aircraft. Applying the method to a CASI image, a map of leaf chlorophyll content was obtained, which on, establishing comparisons with the experimental data allowed us to estimate chlorophyll with a root mean square error of 4.2 μg/cm², similar or smaller than other methods but with the improvement of applicability to a large set of different crop types.     

Changes in plant defense chemistry (pyrrolizidine alkaloids) revealed through high-resolution spectroscopy

Plant toxic biochemicals play an important role in defense against natural enemies and often are toxic to humans and livestock. Hyperspectral reflectance is an established method for primary chemical detection and could be further used to determine plant toxicity in the field. In order to make a first step for pyrrolizidine alkaloids detection (toxic defense compound against mammals and many insects) we studied how such spectral data can estimate plant defense chemistry under controlled conditions.In a greenhouse, we grew three related plant species that defend against generalist herbivores through pyrrolizidine alkaloids: Jacobaea vulgaris, Jacobaea erucifolia and Senecio inaequidens, and analyzed the relation between spectral measurements and chemical concentrations using multivariate statistics.Nutrient addition enhanced tertiary-amine pyrrolizidine alkaloids contents of J. vulgaris and J. erucifolia and decreased N-oxide contents in S. inaequidens and J. vulgaris. Pyrrolizidine alkaloids could be predicted with a moderate accuracy. Pyrrolizidine alkaloid forms tertiary-amines and epoxides were predicted with 63% and 56% of the variation explained, respectively. The most relevant spectral regions selected for prediction were associated with electron transitions and CH, OH, and NH bonds in the 1530 and 2100 nm regions.Given the relatively low concentration in pyrrolizidine alkaloids concentration (in the order of mg g⁻¹) and resultant predictions, it is promising that pyrrolizidine alkaloids interact with incident light. Further studies should be considered to determine if such a non-destructive method may predict changes in PA concentration in relation to plant natural enemies. Spectroscopy may be used to study plant defenses in intact plant tissues, and may provide managers of toxic plants, food industry and multitrophic-interaction researchers with faster and larger monitoring possibilities.     

Multispectral radiometric characterization of coffee rust epidemic in different irrigation management systems

Coffee rust (Hemileia vastatrix Berk. & Br.) is one of the most prominent diseases in coffee (Coffea arabica L.) and causes serious damage to the crop. The pathogen incubation period may be long for about 30 days and 10% incidence of rust may result in 3 times more disease few days after the signals of rust appear in the leaves, even in the absence of new infections. The objective of this study was to evaluate the applicability of coffee crop monitoring under different irrigation systems by orbital radiometry, exploring the spectral signature and spectral, spatial and temporal pattern of rust incidence in the coffee field. The study was carried out in four areas of coffee plantations in Carmo do Rio Claro, Minas Geris, Brazil, between August 2012 and December 2014, under self-propelled, drip, center pivot irrigation systems and rainfed system. Fifteen Landsat-7/ETM + and Landsat-8/OLI-TIRS images were used, trying to establish a better sequence of images between in situ data of rust incidence in the coffee leaves and coffee leaf growth evaluated by sample meshes in the field along the time. Space-time disease incidence distribution maps, Pearson correlation and reflectance spectral signatures were used to evaluate coffee rust progress in the different irrigation fields. The highest coffee rust incidence occurred in August and corresponded to the values of lower NIR reflectance for all evaluated areas, independently of the irrigation management system. In the visible, SWIR-1 and SWIR-2 spectral regions, there were higher reflectance values in the rainfed area when compared to irrigated areas in rainy periods. There was a greater spectral and temporal variation of rust in the center pivot irrigation system when compared to the other irrigation management systems, presenting high values ​​of average incidence of rust above 30% in the periods close to the harvest period, from June to August 2013 and 2014. The high incidence of rust associated with coffee fruit harvest probably led to a reduction in plant leaf growth in center pivot and rainfed fields. There was a negative correlation between near infrared and rust in the self-propelled and center pivot management systems. High coffee rust incidence values mainly in center pivot and rainfed coffee fields determined reduction in the average reflectance of NIR and green and increase reflectance in red, SWIR-1 and SWIR-2 when compared to periods with lower rust in the coffee fields.     

结合Gram-Schmidt变换的高光谱影像谐波分析融合算法

针对高光谱影像谐波分析融合(HAF)算法在影像融合时不顾及地物光谱曲线整体反射率这一缺陷,提出了结合Gram-Schmidt变换的高光谱影像谐波分析融合(GSHAF)改进算法。GSHAF算法可在完全保留融合前后像元光谱曲线波形形态的基础上,将高光谱影像融合简化为各像元光谱曲线的谐波余相组成的二维影像与高空间分辨率影像之间的融合。它是在原始高光谱影像光谱曲线被谐波分解为谐波余项、振幅和相位后,首先将其谐波余项与高空间分辨率影像进行GS变换融合,这样便可有效地修正融合后像元光谱曲线的反射率特征,随后再利用该融合影像与谐波振幅、相位进行谐波逆变换,完成高光谱影像谐波融合。本文最后利用Hyperion高光谱遥感影像与ALI高空间分辨率影像对GSHAF算法进行可行性分析,再以HJ-1A等卫星数据对其进行普适性验证,试验结果表明,GSHAF算法不仅可以完全地保留光谱曲线波形形态,而且融合后影像的地物光谱曲线反射率更接近真实地物。     

RTM-based dynamic absorption integrals for the retrieval of biochemical vegetation traits

Information about pigment and water contents provides comprehensive insights for evaluating photosynthetic potential and activity of agricultural crops. In this study, we present the concept of using spectral integral ratios (SIR) to retrieve three biochemical traits, namely chlorophyll a and b (C_ab), carotenoids (C_cx), and water (C_w) content, simultaneously from hyperspectral measurements in the wavelength range 460−1100 nm. The SIR concept is based on automatic separation of respective absorption features through local peak and intercept analysis between log-transformed reflectance and convex hulls. The algorithm was tested on two synthetically established databases using a physiologically constrained look-up-table (LUT) generated by (i) the leaf optical properties model PROSPECT and (ii) the canopy radiative transfer model (RTM) PROSAIL. LUT constraints were realized based on natural C_cx-C_ab relations and green peak locations identified in the leaf optical database ANGERS. Linear regression between obtained SIRs and model parameters resulted in coefficients of determination (R²) of 0.66 (i and ii) for C_cx, R² = 0.85 (i) and 0.53 (ii) for C_ab, and R² = 0.97 (i) and 0.67 (ii) for C_w, respectively. Using the model established from the PROSPECT LUT, leaf level validation was carried out based on ANGERS data with reasonable results both in terms of goodness of fit and root mean square error (RMSE) (C_cx: R² = 0.86, RMSE = 2.1 μg cm⁻²; C_ab: R² = 0.67, RMSE = 12.5 μg cm^-2; C_w: R² = 0.89, RMSE = 0.007 cm). The algorithm was applied to airborne spectrometric HyMap data acquired on 12th July 2003 in Barrax, Spain and to AVIRIS-NG data recorded on 2nd July 2018 southwest of Munich, Germany. Mapping of the SIR results as multiband images (3-segment SIR) allows for intuitive visualization of dominant absorptions with respect to the three considered biochemical variables. Barrax in situ validation using linear regression models derived from PROSAIL LUT showed satisfactory results regarding C_ab (R² = 0.84; RMSE = 9.06 μg cm^-2) and canopy water content (CWC, R² = 0.70; RMSE = 0.05 cm). Retrieved C_cx values were reasonable according to C_ab-C_cx-dependence plausibility analysis. Hence, the presented SIR algorithm allows for computationally efficient and RTM supported robust retrievals of the two most important vegetation pigments as well as of water content and is ready to be applied on satellite imaging spectroscopy data available in the near future. The algorithm is publicly available as an interface supported tool within the 'Agricultural Applications' of the EnMAP-Box 3 hyperspectral remote sensing software suite.