The effects of eelgrass habitat loss on estuarine fish communities of southern New England

We studied the late June–August fish community in extant and former eelgrass (Zostera marina L.) habitats in 15 estuaries of Buzzards Bay, and in Waquoit Bay, Massachusetts, U.S. Our objective was to quantify the effects of eelgrass habitat loss on fish abundance, biomass, species composition and richness, life-history characteristics, and habitat use by examining the response of the fish community to eelgrass loss in Waquoit and Buttermilk Bays over an 11-yr period (1988–1999) and in 14 other embayments of Buzzards Bay during 1993, 1996, and 1998. Sampling sites were located in present-day or historical eelgrass beds and were classified according to eelgrass habitat complexity (zero complexity: no eelgrass; low complexity: <100 eelgrass shoots or <100 g wet weight m⁻²; high complexity: ≥100 shoots and ≥100 g wet weight m⁻²). Habitats that had lost eelgrass included a variety of substratum types, from bare mud bottom to dense accumulations of red, brown, and green macroalgae (up to 7,065 g wet weight m⁻²). Contemporaneous sampling of fish (by otter trawl) and vegetated habitat (by divers) was conducted at each site. Overall, fish abundance, biomass, species richness, dominance, and life history diversity decreased significantly along the gradient of decreasing eelgrass habitat complexity. Loss of eelgrass was accompanied by significant declines in these measures of fish community integrity. Ten of the 13 most common species collected from 1988–1996 in Waquoit and Buttermilk Bays showed maximum abundance and biomass in sites with high eelgrass habitat complexity. All but two common species declined in abundance and biomass with the complete loss of eelgrass.     

Regional application of an index of estuarine biotic integrity based on fish communities

We applied an index of estuarine biotic integrity (EBI) to 36 sites in 16 estuaries on Cape Cod and in Buzzards Bay, Massachusetts, U.S. Two estuaries were sampled in 6 years, from 1988–1999 (Waquoit and Buttermilk Bays), and a total of 14 others in Buzzards Bay were sampled in 1993, 1996, and 1998. Habitats at each site were classified as either low or medium quality by density and biomass of submerged rooted vegetation (eelgrass). The EBI and its metrics (fish abundance, biomass, total species, species dominance, life history, and proportion by life zone) were successful in classifying habitat quality. Greatest success and least bias of the EBI and its metrics in classifying habitat quality occurred when eelgrass habitats were least degraded. The EBI tracked habitat degradation over time in Waquoit and Buttermilk Bays. Average EBI values in medium-quality habitats of Buzzards Bay estuaries during 1996 and 1998 were less than expected based on earlier EBI values from Waquoit and Buttermilk Bays, suggesting that many of these sites are in transition from medium to low quality. Our results indicate that the EBI is sensitive to habitat quality change, and further suggest that low-quality habitats may approach a stable fish community structure that is well reflected by the EBI. The relationship of the EBI to an independent measure of water quality demonstrated inherent time lags between the degradation and improvement of water quality, fish habitat, and response of the fish community.     

The response of fishes to submerged aquatic vegetation complexity in two ecoregions of the mid-Atlantic bight: Buzzards Bay and Chesapeake Bay

Estuarine seagrass ecosystems provide important habitat for fish and invertebrates and changes in these systems may alter their ability to support fish. The response of fish assemblages to alteration of eelgrass (Zostera marina) ecosystems in two ecoregions of the Mid-Atlantic Bight (Buzzards Bay and Chesapeake Bay) was evaluated by sampling historical eelgrass sites that currently span a broad range of stress and habitat quality. In two widely separated ecoregions with very different fish faunas, degradation and loss of submerged aquatic vegetation (SAV) habitat has lead to declines in fish standing stock and species richness. The abundance, biomass, and species richness of the fish assemblage were significantly higher at sites that have high levels of eelgrass habitat complexity (biomass >100 wet g m^?2; density <100 shotts m^?2) compared to sites that have reduced eelgrass (biomass <100 wet g m^?2; density <100 shoots m^?2) or that have completely lost eelgrass. Abundance, biomass, and species richness at reduced eelgrass complexity sites also were more variable than at high eelgrass complexity habitats. Low SAV complexity sites had higher proportions of pelagic species that are not dependent on benthic habitat structure for feeding or refuge. Most species had greater abundance and were found more frequently at sites that have eelgrass. The replacement of SAV habitats by benthic macroalgae, which occurred in Buzzards Bay but not Chesapeake Bay, did not provide an equivalent habitat to seagrass. Nutrient enrichment-related degradation of eelgrass habitat has diminished the overall capacity of estuaries to support fish populations.     

Couplings of watersheds and coastal waters: Sources and consequences of nutrient enrichment in Waquoit Bay,Massachusetts

Human activities on coastal watersheds provide the major sources of nutrients entering shallow coastal ecosystems. Nutrient loadings from watersheds are the most widespread factor that alters structure and function of receiving aquatic ecosystems. To investigate this coupling of land to marine systems, we are studying a series of subwatersheds of Waquoit Bay that differ in degree of urbanization and hence are exposed to widely different nutrient loading rates. The subwatersheds differ in the number of septic tanks and the relative acreage of forests. In the area of our study, groundwater is the major mechanism that transports nutrients to coastal waters. Although there is some attenuation of nutrient concentrations within the aquifer or at the sediment-water interface, in urbanized areas there are significant increases in the nutrient content of groundwater arriving at the shore’s edge. The groundwater seeps or flows through the sediment-water boundary, and sufficient groundwater-borne nutrients (nitrogen in particular) traverse the sediment-water boundary to cause significant changes in the aquatic ecosystem. These loading-dependent alterations include increased nutrients in water, greater primary production by phytoplankton, and increased macroaglal biomass and growth (mediated by a suite of physiological responses to abundance of nutrients). The increased macroalgal biomass dominates the bay ecosystem through second- or third-order effects such as alterations of nutrient status of water columns and increasing frequency of anoxic events. The increases in seaweeds have decreased the areas covered by eelgrass habitats. The change in habitat type, plus the increased frequency of anoxic events, change the composition of the benthic fauna. The data make evident the importance of bottom-up control in shallow coastal food webs. The coupling of land to sea by groundwater-borne nutrient transport is mediated by a complex series of steps; the cascade of processes make it unlikely to find a one-to-one relation between land use and conditions in the aquatic ecosystem. Study of the process and synthesis by appropriate models may provide a way to deal with the complexities of the coupling.     

Diel oxygen dynamics and anoxic events in an eutrophic estuary of Waquoit Bay,Massachusetts

As a result of nutrient loading from septic systems, a thick canopy of macroalgae covers the bottom of Waquoit Bay, an embayment on Cape Cod, Massachusetts. Using automated conductivity-temperature-oxygen recorders and manual profiles, we measured diel water column O₂ changes during summer in the Childs River, the estuary of the bay with the highest housing density. At dawn in midsummer, bottom waters in the Childs River are chronically hypoxic due to high rates of benthic respiration. On sunny days benthic photosynthesis drives bottom water O₂ to 10–15 mg l^?1 by afternoon. The extent of the daily O₂ excursion is directly proportional to daily irradiance. Large diel O₂ excursions in bottom water are due to limited mixing of surface and bottom water. Density stratification exceeded two sigma-t units 85% of the time during midsummer in the Childs River. Because of stratification, hypoxia and even anoxia occur in this estuary. The first of several anoxic events was observed in Waquoit Bay in 1988, and we have attempted to evaluate factors that trigger anoxia. High rates of benthic respiration result in anoxia when replenishment of O₂ during the day is limited by insufficient light. Our analysis of meteorological records during two recent anoxic events shows that anoxia develops overnight in midsummer during periods of peak summertime temperatures after several days of cloudy, moderately calm weather. Similarly critical conditions existed most summers since 1975, yet anoxic events in the bay have not been reported historically. If climatic warming occurs, anoxic events in the bay may occur more frequently even if algal stocks remain unchanged. Eutrophication of Waquoit Bay is similar to many other embayments in populated coastal areas, and anoxic events may indicate a chronic growing problem in these important ecosystems. However, in shallow, stratified embayments, anoxia may be transient and easily missed without frequent monitoring.     

The Growth of Estuarine Resources (Zostera marina, Mercenaria mercenaria, Crassostrea virginica, Argopecten irradians, Cyprinodon variegatus) in Response to Nutrient Loading and Enhanced Suspension Feeding by Adult Shellfish

While many coastal ecosystems previously supported high densities of seagrass and abundant bivalves, the impacts of overfishing, eutrophication, harmful algal blooms, and habitat loss have collectively contributed to the decline of these important resources. Despite improvements in wastewater treatment in some watersheds and subsequent reduced nutrient loading to neighboring estuaries, seagrass and bivalve populations in these locations have generally not recovered. We performed three mesocosm experiments to simultaneously examine the contrasting effects of nutrient loading and historic suspension-feeding bivalve densities on the growth of eelgrass (Zostera marina), juvenile bivalves (northern quahogs, Mercenaria mercenaria; eastern oysters, Crassostrea virginica; and bay scallops, Argopecten irradians), and juvenile planktivorous fish (sheepshead minnow, Cyprinodon variegatus). High nutrient loading rates led to significantly higher phytoplankton (chlorophyll a) levels in all experiments, significantly increased growth of juvenile bivalves relative to controls with lower nutrient loading rates in two experiments, and significantly reduced the growth of eelgrass in one experiment. The filtration provided by adult suspension feeders (M. mercenaria and C. virginica) significantly decreased phytoplankton levels in all experiments, significantly increased light penetration and the growth of eelgrass in one experiment, and significantly decreased the growth of juvenile bivalves and fish in two experiments, all relative to controls with no filtration from adult suspension feeders. These results demonstrate that an appropriate level of nutrient loading can have a positive effect on some estuarine resources and that bivalve filtration can mediate the effects of nutrient loading to the benefit or detriment of different estuarine resources. Future ecosystem-based approaches will need to simultaneously account for anthropogenic nutrient loading and bivalve restoration to successfully manage estuarine resources.     

Relative importance of grazing and nutrient controls of macroalgal biomass in three temperate shallow estuaries

Macroalgal biomass and competitive interactions among primary producers in coastal ecosystems may be controlled by bottom-up processes such as nutrient supply and top-down processes such as grazing, as well as other environmental factors. To determine the relative importance of bottom-up and top-down processes under different nutrient loading conditions, we estimated potential amphipod and isopod grazer impact on a dominant macroalgal species in three estuaries in Waquoit Bay, Cape Cod, Massachusetts, that are subject to different nitrogen loading rates. We calculated growth increases and grazing losses in each estuary based on monthly benthic survey data of macrophyte biomass and herbivore abundance, field grazing rates of amphipods (Microdeutopus gryllotalpa andCymadusa compta) and an isopod (Idotea baltica) on the preferred and most abundant macroalga (Cladophora vagabunda) and laboratory grazing rates for the remaining species, and in situ macroalgal growth rates. As nitrogen loading rates increased, macroalgal biomass increased (3×), eelgrass (Zostera marina) was lost, and herbivore abundance decreased (1/4×). Grazing rates increased with relative size of grazer (I. baltica > C. compta > M. gryllotalpa) and, for two of the three species investigated, were faster on algae from the high-nitrogen estuary in comparison to the low-nitrogen estuary, paralleting the increased macroalgal tissue percent nitrogen with nitrogen load. Macroalgal growth rates increased (2×) with increasing nitrogen loading rate. The comparison between estimated growth increases versus losses ofC. vagabunda biomass to grazing suggested first, that grazers could lower macroalgal biomass in midsummer, but only in estuaries subject to lower nitrogen loads. Second, the impact of grazing decreased as nitrogen loading rate increased as a result of the increased macroalgal growth rates and biomass, plus the diminished abundance of grazers. This study suggests the relative impact of top-down and bottom-up controls on primary producers varies depending on rate of nitrogen loading, and specifically, that the impact of herbivory on macroalgal biomass decreases with increasing nitrogen load to estuaries.     

How Population Decline Can Impact Genetic Diversity: a Case Study of Eelgrass (<Emphasis Type="Italic">Zostera marina</Emphasis>) in Morro Bay,California

Seagrass populations are in decline worldwide. Eelgrass (Zostera marina L.), one of California’s native seagrasses, is no exception to this trend. In the last 8 years, the estuary in Morro Bay, California, has lost 95% of its eelgrass. Population bottlenecks like this one often result in severe reductions in genetic diversity; however, this is not always the case. The decline of eelgrass in Morro Bay provides an opportunity to better understand the effects of population decline on population genetics. Furthermore, the failure of recent restoration efforts necessitates a better understanding of the genetic underpinnings of the population. Previous research on eelgrass in California has demonstrated a link between population genetic diversity and eelgrass bed health, ecosystem functioning, and resilience to disturbance and extreme climatic events. The genetic diversity and population structure of Morro Bay eelgrass have not been assessed until this study. We also compare Morro Bay eelgrass to Bodega Bay eelgrass in Northern California. We conducted fragment length analysis of nine microsatellite loci on 133 Morro Bay samples, and 20 Bodega Bay samples. We found no population differentiation between the remaining beds in Morro Bay and no difference among samples growing at different tidal depths. Comparisons with Bodega Bay revealed that Morro Bay eelgrass contains three first-generation migrants from the north, but Morro Bay remains considerably genetically differentiated from Bodega Bay. Despite the precipitous loss of eelgrass in Morro Bay between 2008 and 2017, genetic diversity remains relatively high and comparable to other populations on the west coast.     

Comparison of habitat use by estuarine fish assemblages in the Acadian and Virginian zoogeographic provinces

Comparison of the relative abundance of fish species from different life-history groups and their temporal patterns of estuarine habitat use from two estuaries north and south of Cape Cod indicates that the Cape acts as a zoogeographic boundary. Between April 1988 and December 1989, monthly seine and trawl samples were collected from nearshore, shallow-water marsh, and beach and deeper open-water habitats in Wells Harbor, Maine, and Waquoit Bay, Massachusetts. Forty-eight species and 80,341 individuals were collected from Waquoit Bay compared to 24 species and 22,561 individuals from Wells Harbor. Waquoit Bay had proportionally fewer resident species and more marine, nursery, and occasional species than Wells Harbor. Annual density and biomass values were greater across all habitats in Waquoit Bay, with the summer values from the marsh habitat an order of magnitude higher than comparable summer data from the Wells habitats. We suggest that marsh and beach habitats provide a nursery area for young-of-the-year fishes, while deeper, open-water habitats serve as a corridor for fishes moving to nearshore habitats or serve as a refuge during low tide.     

Distribution, abundance, and habitat characteristics of juvenile tautog (Tautoga onitis, family labridae) in Narragansett Bay, Rhode Island, 1988–1992

Estuarine nursery areas are critical for successful recruitment of tautog (Tautoga onitis), yet they have not been studied over most of this species' range. Distribution, abundance and habitat characteristics of young-of-the-year (YOY, age 0) and age 1+juvenile tautog were evaluated during 1988–1992 in the Narragansett Bay estuary, Rhode Island, using a 16-station, beach-seine survey. Estuary-wide abundance was similar among years. Greatest numbers of juveniles were collected at northern Narragansett Bay stations between July and September. Juvenile abundances varied with density of macroalgal and eelgrass cover; abundances ranged from 0.03 fish per 100 m² to 8.1 fish per 100 m². Although juveniles use eelgrass, macroalgae is the dominant vegetative cover in Narragansett Bay. Macroalgal habitats play a previously unrealized, important role and contribute to successful recruitment of juvenile tautog in Narragansett Bay. Juvenile abundances did not vary with sediment type or salinity, but were correlated with surface water temperature. Fish collected in June were age 1+ juveniles from the previous year-class (50–167 mm TL) and these declined in number after July or August. The appearance of YOY (25–30 mm TL) in July and August was coincident with the period of their greatest abundances. A precipitous decline in abundance occurred by October because of the individual or combined effects of mortality and movement to alternative habitats. Based on juvenile abundance, a previously unidentified spawning area was noted in Mount Hope Bay, a smaller embayment attached to the northeastern portion of Narragansett Bay. In August 1991, Hurricane Bob disrupted juvenile sise distribution and abundance, resulting in reduced numbers of YOY collected after the storm and few 1+ juveniles in 1992.     

Patterns of seagrass community response to local shoreline development

Three quarters of the global human population will live in coastal areas in the coming decades and will continue to develop these areas as population density increases. Anthropogenic stressors from this coastal development may lead to fragmented habitats, altered food webs, changes in sediment characteristics, and loss of near-shore vegetated habitats. Seagrass systems are important vegetated estuarine habitats that are vulnerable to anthropogenic stressors, but provide valuable ecosystem functions. Key to maintaining these habitats that filter water, stabilize sediments, and provide refuge to juvenile animals is an understanding of the impacts of local coastal development. To assess development impacts in seagrass communities, we surveyed 20 seagrass beds in lower Chesapeake Bay, VA. We sampled primary producers, consumers, water quality, and sediment characteristics in seagrass beds, and characterized development along the adjacent shoreline using land cover data. Overall, we could not detect effects of local coastal development on these seagrass communities. Seagrass biomass varied only between sites, and was positively correlated with sediment organic matter. Epiphytic algal biomass and epibiont (epifauna and epiphyte) community composition varied between western and eastern regions of the bay. But, neither eelgrass (Zostera marina) leaf nitrogen (a proxy for integrated nitrogen loading), crustacean grazer biomass, epifaunal predator abundance, nor fish and crab abundance differed significantly among sites or regions. Overall, factors operating on different scales appear to drive primary producers, seagrass-associated faunal communities, and sediment properties in these important submerged vegetated habitats in lower Chesapeake Bay.     

Controls on nutrient and phytoplankton dynamics during normal flow and storm runoff conditions, southern Kaneohe Bay, Hawaii

Fluvial effects on nutrient and phytoplankton dynamics were evaluated in southern Kaneohe Bay, Oahu, Hawaii. Fluvial inputs occurred as small, steady baseflows interrupted by intense pulses of storm runoff. Baseflow river inputs only affected restricted areas around stream mouths, but the five storm events sampled during this study produced transient runoff plumes of much greater spatial extent. Nutrient loading via runoff generally led to an increase of the phytoplankton biomass and gross primary productivity in southern Kaneohe Bay, but the rapid depletion of nutrients resulted in a decline of the algal populations in the relatively short time of days. Under baseline conditions, water column primary productivity in southern Kaneohe Bay is normally nitrogen limited. Following storm events, the high ratio of dissolved inorganic nitrogen to dissolved inorganic phosphorus (DIN:DIP, 25–29) fluxes of runoff nutrients drove bay waters towards phosphorus limitation. A depletion of phosphate relative to DIN in surface waters was observed following all storm events. Due to high flushing rates, recovery times of bay waters from storm perturbations ranged from 3 to 8 d and appeared to be correlated with tidal range. Storm inputs have a significant effect on the water column ecosystem and biogeochemistry in southern Kaneohe Bay. The perturbations were only transient events and the system rapidly recovered to prestorm conditions.     

Marine electrical resistivity imaging of submarine groundwater discharge: sensitivity analysis and application in Waquoit Bay, Massachusetts, USA

Electrical resistivity imaging has been used in coastal settings to characterize fresh submarine groundwater discharge and the position of the freshwater/salt-water interface because of the relation of bulk electrical conductivity to pore-fluid conductivity, which in turn is a function of salinity. Interpretation of tomograms for hydrologic processes is complicated by inversion artifacts, uncertainty associated with survey geometry limitations, measurement errors, and choice of regularization method. Variation of seawater over tidal cycles poses unique challenges for inversion. The capabilities and limitations of resistivity imaging are presented for characterizing the distribution of freshwater and saltwater beneath a beach. The experimental results provide new insight into fresh submarine groundwater discharge at Waquoit Bay National Estuarine Research Reserve, East Falmouth, Massachusetts (USA). Tomograms from the experimental data indicate that fresh submarine groundwater discharge may shut down at high tide, whereas temperature data indicate that the discharge continues throughout the tidal cycle. Sensitivity analysis and synthetic modeling provide insight into resolving power in the presence of a time-varying saline water layer. In general, vertical electrodes and cross-hole measurements improve the inversion results regardless of the tidal level, whereas the resolution of surface arrays is more sensitive to time-varying saline water layer.     

Subtidal Eelgrass Declines in the Great Bay Estuary,New Hampshire and Maine,USA

Long-term monitoring of eelgrass (Zostera marina L.) beds in the central subtidal portion of the Great Bay Estuary showed declines at both transplanted sites and reference beds. Eelgrass beds transplanted as mitigation for habitat loss from port development reached comparable functions (e.g., primary production, canopy structure) to natural reference sites by the late 1990s, within 6 years of transplanting. Data from 2001 to the present show significant declines in eelgrass parameters (biomass, shoot density, canopy height, leaf area) at all sites, suggesting that these declines are the result of an estuary-wide factor.     

Large-Scale Differences in Community Structure and Ecosystem Services of Eelgrass (<Emphasis Type="Italic">Zostera marina</Emphasis>) Beds Across Three Regions in Eastern Canada

Eelgrass (Zostera marina) forms extensive beds in temperate coastal and estuarine environments worldwide and provides important ecosystem services, including habitat for a wide range of species as well as nutrient cycling and carbon storage. However, little is known about how eelgrass ecosystem structure and services differ naturally among regions. Using large-scale field surveys, we examined differences in eelgrass bed structure, carbon and nitrogen storage, community composition, and habitat services across three distinct regions in Eastern Canada. We focused on eelgrass beds with low anthropogenic impacts to compare natural differences. In addition, we analyzed the relationships of eelgrass bed structure with environmental conditions, and species composition with bed structure and environmental conditions, to elucidate potential drivers of observed differences. Our results indicate that regional differences in eelgrass bed structure were weakly correlated with water column properties, whereas differences in carbon and nitrogen storage were mainly driven by differences in eelgrass biomass. There were distinct regional differences in species composition and diversity, which were particularly linked to temperature, as well as eelgrass bed structure indicating differences in habitat provision. Our results highlight natural regional differences in ecosystem structure and services which could inform spatial management and conservation strategies for eelgrass beds.     

Dynamic simulation of littoral zone habitats in low Chesapeake Bay. II. Seagrass habitat primary production and water quality relationships

Seagrasses are indicators of ecosystem state because they are sensitive to variations in water composition and clarity resulting from watershed-level impacts. A simulation model designed to studyZostera marina (eelgrass) habitat dynamics in a variable littoral zone environment was used to address the potential ecological responses to eutrophication in lower Chesapeake Bay. The adjacent channel boundary environment is a source of dissolved and particulate materials to the littoral zone. In the simulations, concentrations of key water quality variables in the adjacent estuarine channel boundary were either halved or doubled relative to the base case to investigate light versus nitrogen effects. The role of the seagrass meadow in littoral zone carbon and nitrogen dynamics was evaluated when meadow size was changed in the model. Particulate and dissolved organic carbon accounted for 83% of the submarine light attenuation in the seagrass meadow. In all model runs, the water column concentrations of chlorophylla and dissolved inorganic nitrogen (DIN) were below the habitat criteria proposed as critical to seagrass survival. Eelgrass community production was carefully regulated by the interactive effects of light, nitrogen, and grazing on epiphyte growth. Increased eelgrass coverage in the littoral zone led to a simulated doubling of ecosystem primary production but reduced the fraction of production by planktonic and sediment microalgae. The simulation model presented here demonstrated the importance of material input from the channel in littoral zone biogeochemical dynamics. Submarine ligh regulated primary production more strongly than inorganic nitrogen concentrations in the model. External DIN concentrations influenced seagrass survival indirectly: enrichment stimulated growth of epiphytes and phytoplankton and promoted shading of the seagras leaf. The model was based upon a unimpacted ecosystem and deteriorated water quality negatively influenced primary production greater than the increases triggered by improved condition. Increased material loading to the littoral zone reduced submarine light availability, increased phytoplankton production, lowered ecosystem production, and reduced subtidal vegetated habitat. This simulation model of the estuarine littoral zone model combines hydrodynamics, biogeochemical sources and sinks, and living resources in order to better understand structure, function, and change in aquatic ecosystems.     

Nitrogen loads to estuaries: Using loading models to assess the effectiveness of management options to restore estuarine water quality

Nitrogen (N) loading to estuaries has become a major concern for coastal planners. As urban development on coastal watershed continues, estuaries and bays are becoming more eutrophic, and cascading effects are being felt at every trophic level. Managers and stakeholders need to have a suite of effective management tools that can be applied to coastal watersheds to minimize the effects of eutrophication. We applied an N loading model and an estuarine loading model to examine the effectiveness of a suite of potential management options that could be implemented in Waquoit Bay, Cape Cod, Massachusetts. This estuarine system is a case study in which we can explore the relative potential effectiveness of decreasing inputs from wastewater and fertilizer-derived N, diverting nitrogenous runoff from impervious surfaces, altering zoning ordinances, preserving forested tracts of land as well as freshwater and saltwater wetlands, harvesting macroalgae, dredging estuary channels, and exterminating waterfowl. From a combination of simulation results, assessment of the magnitude of loads from different sources, and through different land covers, and the additional consideration of feasibility we identified management options with high, intermediate, and low potential effectiveness. Improvement of septic system performance, use of zoning regulations, preservation of forested tracts and freshwater bodies, and conservation of salt marshes emerged as the most promising avenues to manage N loads in our system. Installation of wastewater treatment plants, controlling fertilizer use, and harvesting macroalgae would potentially have intermediate success. Diversion of runoff from impervious surfaces, dredging, and extermination of waterfowl show little promise at reducing N loads. These conclusions potentially set priorities for decision-makers charged with the management of Waquoit Bay. The same procedures applied to another watershed-estuary system with different land covers and different estuarine features may differ. Evaluation studies like this need to be done for any particular site, since the watershed-estuary coupling and the loads delivered to the receiving estuary could differ. The Waquoit Bay case study provides an example of a protocol that leads to identification of the most promising management options.     

Nutrient inputs to the Choptank River estuary: Implications for watershed management

Degraded water quality due to water column availability of nitrogen and phosphorus to algal species has been identified as the primary cause of the decline of submersed aquatic vegetation in Chesapeake Bay and its subestuaries. Determining the relative impacts of various nutrient delivery pathways on estuarine water quality is critical for developing effective strategies for reducing anthropogenic nutrient inputs to estuarine waters. This study investigated temporal and spatial patterns of nutrient inputs along an 80-km transect in the Choptank River, a coastal plain tributary and subestuary of Chesapeake Bay, from 1986 through 1991. The study period encompassed a wide range in freshwater discharge conditions that resulted in major changes in estuarine water quality. Watershed nitrogen loads to the Choptank River estuary are dominated by diffuse-source inputs, and are highly correlated to freshwater discharge volume. in years of below-average freshwater discharge, reduced nitrogen availability results in improved water quality throughout most of the Choptank River. Diffuse-source inputs are highly enriched in nitrogen relative to phosphorus, but point-source inputs of phosphorus from sewage treatment plants in the upper estuary reduce this imbalance, particularly during summer periods of low freshwater discharge. Diffuse-source nitrogen inputs result primarily from the discharge of groundwater contaminated by nitrate. Contamination is attributable to agricultural practices in the drainage basin where agricultural land use predominates. Groundwater discharge provides base flow to perennial streams in the upper regions of the watershed and seeps directly into tidal waters. Diffuse-source phosphorus inputs are highly episodic, occurring primarily via overland flow during storm events. Major reductions in diffuse-source nitrogen inputs under current landuse conditions will require modification of agricultural practices in the drainage basin to reduce entry rates of nitrate into shallow groundwater. Rates of subsurface nitrate delivery to tidal waters are generally lower from poorly-drained versus well-drained regions of the watershed, suggesting greater potential reductions of diffuse-source nitrogen loads per unit effort in the well-drained region of the watershed. Reductions in diffuse-source phosphorus loads will require long-term management of phosphorus levels in upper soil horizons. *** DIRECT SUPPORT *** A01BY074 00021     

Restored Eelgrass (<Emphasis Type="Italic">Zostera marina</Emphasis> L.) as a Refuge for Epifaunal Biodiversity in Mid-Western Atlantic Coastal Bays

As nearshore ecosystems are increasingly degraded by human activities, active restoration is a critical strategy in ensuring the continued provision of goods and services by coastal habitats. After being absent for nearly six decades, over 1800 ha of the foundational species eelgrass (Zostera marina L.) has been successfully re-established in the coastal bays of the mid-western Atlantic, USA, but nothing is known about the recovery of associated animal communities in this region. Here, we determine the patterns and drivers of functional recovery in epifaunal invertebrates associated with the restored eelgrass habitat from 2001 to 2013. After less than a decade, the invertebrate community in the restored bed was richer, more even, and exhibited greater variation in functional traits than a nearby reference bed. Analysis of a suite of environmental and physical variables using random forests revealed these differences were primarily due to the increasing area and density of eelgrass, a direct consequence of ongoing restoration efforts. Based on analysis of functional traits, we propose that the rapid life histories of constituent organisms may have played a key role in their successful recovery. We also speculate that diverse epifaunal communities may have contributed to the restoration success through a well-described mutualism with eelgrass. Given that restored eelgrass now make up 32 % of total seagrass cover in the mid-Atlantic coastal bays, this restoration may conserve regional biodiversity by providing new and pristine habitat, particularly given the general decline of existing eelgrass in this region.