Analysis of symbiotic Symbiodinium in scleractinian corals off Northwestern Kish Island,Persian Gulf

The genus Symbiodinium plays an essential role in the resistance and survival of reef‐building corals during temperature anomalies. Coral colonies inhabiting the Persian Gulf (PG) experience extended periods of different stresses. Kish Island is located in the harsh environment of the Northern PG with previously reported bleaching episodes. Samples of six coral species from Northwestern Kish Island were analysed by internal transcribed spacer 2 of ribosomal DNA to identify in hospite Symbiodinium populations. The results showed that lineage D of Symbiodinium was the most prevalent clade among different coral colonies, while clade C was only detected in symbiosis with a single coral species. However, the detected Symbiodinium subclades belonged to two host generalists. The predominance of the stress tolerant Symbiodinium trenchii and subclade C3 could suggest an acclimatization strategy to cope with the hostile environment of the PG.     

Genetic seascape of the threatened Caribbean elkhorn coral,Acropora palmata,on the Puerto Rico Shelf

It has been proposed that the elkhorn coral Acropora palmata is genetically separated into two distinct provinces in the Caribbean, an eastern and a western population admixing in Western Puerto Rico and around the Mona Passage. In this study, the genetic structure of A. palmata sampled at 11 Puerto Rican localities and localities from Curaçao, the Bahamas and Guadeloupe were examined. Analyses using five microsatellite markers showed that 75% of sampled colonies had unique genotypes, the rest being clone mates. Genetic diversity among genets was high (H_E = 0.761) and consistent across localities (0.685–0.844). F_ST ranged from ?0.011 to 0.047, supporting low but significant genetic differentiation between localities within the previously reported eastern and western genetic provinces. Plots of genetic per geographic distances and significant Mantel tests supported isolation‐by‐distance (IBD) within Puerto Rico. Analysis with the software STRUCTURE favored a scenario with weak differentiation between two populations, assigning Eastern Puerto Rican locations (Fajardo and Culebra), Guadeloupe and Curaçao to the Caribbean eastern population and Western Puerto Rican locations (west of Vega Baja and Ponce), Mona and the Bahamas to the Caribbean western population. Vieques and San Juan area harbored admixed profiles. Standardized F_ST per 1000 km unit further supported higher differentiation between localities belonging to different STRUCTURE populations, with IBD being stronger within Puerto Rico than on larger regional scales. This stronger genetic transition seems to separate localities between putative eastern and western provinces in the Eastern Puerto Rican region, but not around the Mona Passage.     

造礁石珊瑚共生藻的分子分类研究

通过nlsrDNA(nuclear large-subunit ribosomal DNA)及nssrDNA(nuclear small-subunit ribosomal DNA)的PCR-RFLP研究广东徐闻地区8科15属25种62个造礁石珊瑚样本的共生藻。结果表明,共生藻nlsrDNA的RsaI酶切基因型只存在一种,属于C系群共生藻;而nssrDNA的MobⅠ和TaqⅠ两种酶切都存在两种基因型。实验进一步通过PCR直接测序法得到62个造礁石珊瑚样品的共生藻ITS序列,与GenBank上的4种虫黄藻ITS序列构建Neighbor-Joining系统发育树,结果表明该区的造礁石珊瑚共生两种不同种类(亚系群)的共生藻,分别为C1亚系群与C15亚系群共生藻,两个亚系群间的遗传距离为0.019。广东徐闻地区造礁石珊瑚共生藻多样性偏低,暗示该地区珊瑚礁生态系统应对环境变化的能力可能较弱。     

A potential new threat on the coral reefs of Puerto Rico: The recent emergence of Ramicrusta spp.

The rapid appearance of Ramicrusta spp. is described and analyzed from 40 permanent monitoring coral reef stations in Puerto Rico. Before 2016, Ramicrusta had not been observed from any of the reef monitoring stations. By 2018, it was present at 76% of all the monitoring stations. Ramicrusta was the dominant substrata type at all of the shallow reef sites sampled on the east coast (e.g., Fajardo, Culebra, and Vieques), reaching a cover (±SE) as high as 63.0 ± 5.8%. The spread of Ramicrusta occurred at the expense of historically resilient living benthic elements, such as turf algae. Since its detection in 2016, colonization of hard substrata by Ramicrusta remained constant, with the exception of two shallow reefs in Fajardo and Culebra, where the cover was significantly reduced by the scouring and or abrasive effects of two major hurricanes. The ecological implications of Ramicrusta prevalence on Puerto Rican reefs remain unclear; however, increasing herbivory might be a useful mitigation tool in the reduction of Ramicrusta abundance on coral reefs.     

Long‐term temporal and spatial patterns in bioeroding sponge distribution at the Abrolhos Bank,Brazil, Southwestern Atlantic

Bioeroding sponges belong to the most dominant bioeroders, significantly contributing to the erosion of coral reefs. Some species are tolerant or even benefit from environmental conditions such as ocean warming, acidification, and eutrophication. In consequence, increases in sponge bioerosion have been observed on some coral reefs over the last decades. The Abrolhos Bank is the largest coral reef system in the South Atlantic. It has been affected by sedimentation, eutrophication, overfishing, and climate change, mainly affecting coastal reefs, and at lesser intensity outer ones as well. This study aimed to describe spatial and temporal patterns in bioeroding sponge distribution in carbonate substrates in the Abrolhos Bank. Photo‐quadrats were used to compare bioeroding sponge abundance between two shallow reefs: a coastal, Pedra de Leste (PL), and an outer reef, Parcel dos Abrolhos (PAB). Each individual was delimitated over the substrate by determining the sponge surface through a line connecting the outermost papillae. The study was conducted over 6 years in 2008–2009 and 2013–2016. Four species of bioeroding sponges were identified: Cliona carteri Ridley, 1881, C. delitrix Pang, 1973, C. cf. schmidtii Ridley, 1881, and Siphonodictyon coralliphagum Rützler, 1971. The distribution and abundance of species varied between the inner and outer reefs and across the years, and displayed certain selectivity for the calcareous substrates recorded. Crustose coralline algae (CCA) were the main substrate excavated by the most abundant bioeroding species, C. carteri, and represented 70% of the substrate types occupied by this sponge (CCA, coral overgrown by CCA and plain coral). The highest abundance of bioeroding sponges observed in photo‐quadrats was 21.3 individuals/m² at the outer reefs (PAB) in 2014. The abundances or areal extents of bioeroding sponges were up to 10 times greater on the outer reefs than on the coastal ones, where sedimentation is higher and more strongly influenced by siliciclastic material. Moreover, a higher herbivorous fish biomass has been reported on outer reefs which could also influence the higher abundance of bioeroding sponges in outer reefs. During the study period of 6 years, an increase in bioeroding sponge abundance was observed at the outer reefs (PAB), with the sea surface temperature increase. As CCA have an important role in reefal cementation and carbonate production in the Abrolhos reefs, a bioerosion impact might be expected, in particular, on the outer reefs.     

Decadal changes in common reef coral populations and their associations with algal symbionts (Symbiodinium spp.)

Decadal populations changes in four coral taxa and their patterns of association with algal symbionts (Symbiodinium spp. – 10 years of sampling) were examined on Kenyan back reefs over a period of climatic disturbances (1991?2009). Some of the better surviving taxa, Pavona and Pocillopora, were associated with variable temperature regimes and >50% of sampled colonies in these taxa had some of the more thermally tolerant Symbiodinium in clade D. In contrast, only around 35% of Acropora and no branching forms of Porites contained detectable levels of clade D, and both taxa experienced high levels of thermally‐induced mortality and poor recovery. Overall, however the relationship between Symbiodinium clade and population‐level success of coral hosts was not strong, and differential success inside and outside fisheries closures suggests that other factors, such as predation on corals, were also influential. Consequently, while Symbiodinium in clade D may contribute to the success of coral hosts across thermal disturbances, multiple ecological factors and additional biological traits also influence their long‐term survival.     

Deep‐water Corallium rubrum (L., 1758) from the Mediterranean Sea: preliminary genetic characterisation

The precious red coral Corallium rubrum (L., 1758) lives in the Mediterranean Sea and adjacent Eastern Atlantic Ocean on subtidal hard substrates. Corallium rubrum is a long‐lived gorgonian coral that has been commercially harvested since ancient times for its red axial calcitic skeleton and which, at present, is thought to be in decline because of overexploitation. The depth distribution of C. rubrum is known to range from c. 15 to 300 m. Recently, live red coral colonies have been observed in the Strait of Sicily at depths of c. 600–800 m. This record sheds new light on the ecology, biology, biogeography and dispersal mechanism of this species and calls for an evaluation of the genetic divergence occurring among highly fragmented populations. A genetic characterization of the deep‐sea red coral colonies has been done to investigate biological processes affecting dispersal and population resilience, as well as to define the level of isolation/differentiation between shallow‐ and deep‐water populations of the Mediterranean Sea. Deep‐water C. rubrum colonies were collected at two sites (south of Malta and off Linosa Island) during the cruise MARCOS of the R/V Urania. Collected colonies were genotyped using a set of molecular markers differing in their level of polymorphism. Microsatellites have been confirmed to be useful markers for individual genotyping of C. rubrum colonies. ITS‐1 and mtMSH sequences of deep‐water red coral colonies were found to be different from those found in shallow water colonies, suggesting the possible occurrence of genetic isolation among shallow‐ and deep‐water populations. These findings suggest that genetic diversity of red coral over its actual range of depth distribution is shaped by complex interactions among geological, historical, biological and ecological processes.     

Ecological assessments of the coral reef communities in the Eastern Caribbean and the effects of herbivory in influencing coral juvenile density and algal cover

Caribbean reefs have been unevenly surveyed, with many areas lacking baseline data. In this study, the current status of Orbicella reefs, a structurally complex forereef habitat, was quantified in an understudied region, the Eastern Caribbean. During 2011 the same observers surveyed benthic assemblages, coral juvenile density, herbivorous fishes, and invertebrates at 30 Orbicella reefs in four Eastern Caribbean areas: Antigua, Barbados, St Lucia, and St Vincent and the Grenadines (hereafter St Vincent). Not all Orbicella forereefs were functionally the same in the Eastern Caribbean. Benthic communities and herbivorous fishes varied greatly among islands. Hard coral had the highest overall percent cover on most reefs in this study, with an average cover of 22%, and was greater than fleshy macroalgal cover at 83% of the sites. Overall, coral juvenile density was low but was positively associated with higher densities of Diadema antillarum, highlighting the importance of herbivory on the reefs. Nearshore coral reefs in Barbados were in a better state than other areas, exhibiting higher coral cover dominated by spawning corals, higher densities of coral juveniles exhibiting higher coral cover dominated by spawning corals, higher densities of coral juveniles and D. antillarum. Low biomass of herbivorous fishes at a majority of the coral reef sites is of major concern for the functioning of these reefs. Conservation of parrotfishes and other herbivores is necessary given the abundance of algae on most of these reefs and the beneficial effect of their presence on coral juveniles. This is the first comprehensive study that compares the state of Orbicella reefs in the Eastern Caribbean, providing valuable information that will be useful in creating realistic targets for future management and conservation.     

Ontogenetic patterns of concentration indicate lagoon nurseries are essential to common grunts stocks in a Puerto Rican bay

Estimates of abundance and size of three commercially exploited grunt species indicate ontogenetic changes in habitat utilization concentrate their juveniles within the lagoon of the Bay of La Parguera, Puerto Rico. Eleven biotopes, defined by four benthic structures (reef, mangrove, vegetation beds and unconsolidated sediments) and three geographic zones (inner lagoon, outer lagoon and bank shelf) were sampled randomly by visual surveys. French, bluestriped and white grunt (Haemulon flavolineatum, Haemulon sciurus and Haemulon plumeri) were common in the bay and appeared to exhibit similar life history patterns of cross-shelf migration and habitat selection. Recently settled grunts were dispersed over vegetated and unconsolidated soft-bottom sediments of the bay. The juvenile stage occurred in highest densities in shallow lagoon biotopes among the submerged prop-roots of mangrove stands and on inshore reefs. Length data indicates that grunts migrate offshore to adult habitat via increasingly deep reefs. Indices of biotope nursery function based on standing stock estimates of juveniles identified three biotopes, all within the inner lagoon as essential habitat for juveniles of 5–10 cm length interval. This concentration of juveniles within biotopes of the lagoon could represent a bottleneck to recruitment for grunt stocks. Evidence that quantity and quality of lagoon nurseries may limit recruitment indicates that these areas represent a key component of a marine protected area designed to restore fisheries within the bay.     

The genetic structure of the exotic ascidian Styela plicata (Tunicata) from Italian ports,with a re‐appraisal of its worldwide genetic pattern

The pleated ascidian Styela plicata (Lesueur, 1823) is a solitary species commonly found in ports and marinas around the world. It has been recorded in the Mediterranean region since the mid‐19th century. In the present work, the species’ genetic diversity was analysed, employing a 613‐bp portion of the mitochondrial cytochrome c oxidase subunit I (COI) gene from 149 individuals collected in 14 ports along Italian coasts at spatial scales ranging from 1 to approximately 2200 km. Haplotype and nucleotide diversity values were h = 0–0.933 (total h = 0.789) and π = 0–0.145 (total π = 0.0094), respectively. A general southward trend of increasing within‐population genetic diversity was observed. Analysis of molecular variance revealed significant genetic structuring but no significant differences were detected among basins, and no isolation by distance was found. Our data were integrated with the COI sequences available from previous studies and re‐analysed in order to investigate the possible routes of introduction of this ascidian into the Mediterranean Sea. The presence of the two COI haplogroups detected in previous molecular investigations on S. plicata at intercontinental spatial scale was confirmed in the Mediterranean Sea. The results revealed multiple introductions of S. plicata, although some locations appear to have experienced rapid expansion from few founding individuals with reduced genetic diversity. However, continuous introductions would confound the pattern deriving from single founder events and make it difficult to estimate the time needed for gene diffusion into established populations. This mixing of effects creates difficulties in understanding the past and current dynamics of this introduction, and managing this alien invasive ascidian whose genetic structure is continuously shuffled by vessel‐mediated transport.     

Taxonomic distinctness in the diet of two sympatric marine turtle species

Marine turtles are considered keystone consumers in tropical coastal ecosystems and their decline through overexploitation has been implicated in the deterioration of reefs and seagrass pastures in the Caribbean. In the present study, we analysed stomach contents of green (Chelonia mydas) and hawksbill turtles (Eretmochelys imbricata) harvested in the legal turtle fishery of the Turks and Caicos Islands (Caribbean) during 2008–2010. Small juveniles to adult‐sized turtles were sampled. Together with data from habitat surveys, we assessed diet composition and the taxonomic distinctness (and other species diversity measures) in the diets of these sympatric marine turtle species. The diet of green turtles (n = 92) consisted of a total of 47 taxa: including three species of seagrass (present in 99% of individuals), 29 species of algae and eight sponge species. Hawksbill turtles (n = 45) consumed 73 taxa and were largely spongivorous (16 species; sponges present in 100% of individuals) but also foraged on 50 species of algae (present in 73% of individuals) and three species of seagrass. Plastics were found in trace amounts in 4% of green turtle and 9% of hawksbill turtle stomach samples. We expected to find changes in diet that might reflect ontogenetic shifts from small (oceanic‐pelagic) turtles to larger (coastal‐benthic) turtles. Dietary composition (abundance and biomass), however, did not change significantly with turtle size, although average taxonomic distinctness was lower in larger green turtles. There was little overlap in prey between the two turtle species, suggesting niche separation. Taxonomic distinctness routines indicated that green turtles had the most selective diet, whereas hawksbill turtles were less selective than expected when compared with the relative frequency and biomass of diet items. We discuss these findings in relation to the likely important trophic roles that these sympatric turtle species play in reef and seagrass habitats.     

Lack of association between color morphs of the Jellyfish Cassiopea andromeda and zooxanthella clade

Understanding the ecology and evolution of the cnidarian-algal symbiosis is of major scientific interest as it is sensitive to temperature and strong light and may therefore be susceptible to climate change. The stability of this mutualism is often mediated by host color pigments that influence photosynthetic activity in symbiotic dinoflagellates either by providing the photosystem with irradiance of suitable wavelength or by protecting it from much too much and potentially damaging light. Like scleractinian corals, the upside-down jellyfish, Cassiopea andromeda, relies heavily on the nutrients provided by its symbionts of the dinoflagellate genus Symbiodinium. It occurs in several conspicuously different color morphs and is found in habitats with high levels of irradiation. We tested whether the color morphs of Cassiopea were correlated with the Symbiodinium distribution in the host and whether host color was associated with different clades of Symbiodinium. We found that the presence of color pigment did not correlate with the distribution of Symbiodinium in the host. Symbiodinium was found in both the colored tentacles of the jellyfish and the colorless feeding tentacles. At least six different color morphs co-occurred in the very shallow waters of the Red Sea, but they all hosted a single Symbiodinium clade (clade A1). Therefore, no correlation of host color morph and Symbiodinium clade could be found. Photoaccumulative or photoprotective functions of host pigments, as proposed for some scleractinian corals, thus seem unlikely in the colored tentacles (vesicles) of the upside-down jellyfish Cassiopea andromeda.     

An Unusual Bluegreen Alga Symbiotic with Two New Species of Ulosa (Porifera: Hymeniacidonidae) from Carrie Bow Cay,Belize*

Abstract. Two new species of the sponge genus Ulosa were found living in symbiosis with a chroococcacean cyanophyte (cyanobacterium) in shallow Caribbean coral reefs off Belize (Central America). Ulosa funicularis is a stringy green sponge (styles: 157 × 2.5 μm, mean dimensions); U. arenosa is a thickly encrusting, shaggy, brownish-greenish mottled species with sandy ectosome (styles: 175 × 3.6 μm). The endosymbiotic algae make up 50% of the cellular sponge tissue. The algal cells are light green, spherical, 5–9 μm in diameter, and divide by median constriction. Electron microscopy shows that cell walls are fully developed but that thylakoids are unusual for their inflated sacs, which are in communication with the nucleoplasmic regions. Although the pigment composition is typical for the Cyanophyta, the phycobiliproteins occur in considerably     

Symbiodinium diversity within Acropora muricata and the surrounding environment

Several long‐term studies have monitored populations of algal symbionts, Symbiodinium sp., in coral hosts over different temporal and spatial scales, and among multiple host species. The extension of these studies to include environmental pools of algal symbionts from sources such as the water column, sediments, free‐floating mucus mats and those settling on biofilms has only been studied by a few, yet has the potential to enhance our understanding of the dynamics and controls on symbiont populations. Adaptive changes in the coral symbiont complement rely either on the uptake of new strains from the environment or population expansion of rarer strains in the existing symbiont population. The relative scope for these alternative pathways of uptake is unknown. This study therefore examined spatial changes in Symbiodinium clades within the water column at two different time periods and compared these with other environmental pools (biofilms, sediments, and mucus mats) and those within the dominant reef‐building species at the study site, Acropora muricata. A diversity of algal symbiont clades were detected in environmental pools, with specific clades associated with different habitats. At an island scale, there was significant variation in clade composition between sites separated by 0.5–7 km, a result which was repeated for both sample periods encompassing different seasons (March 2009 and August 2010). Although no single environmental pool contained a Symbiodinium complement comparable to that of the host coral species investigated, the dominant coral Symbiodinium were available in combinations of the environmental pools, indicating that the coral has the potential to obtain its symbionts from a variety of environmental sources.     

Growth and population dynamics of the non‐indigenous species Branchiomma luctuosum Grube (Annelida,Sabellidae) in the Ionian Sea (Mediterranean Sea)

The population dynamics and gametogenesis of the non‐indigenous polychaete species Branchiomma luctuosum Grube, 1869 (Annelida, Sabellidae) has been investigated at three sites in the Taranto Seas (Ionian Sea, Mediterranean Sea). The species, probably introduced from the Red Sea, has been reported in the Mediterranean Sea since 1983. The species is hermaphrodite, and the reproductive season is between June and October when the largest mean size of oocytes was recorded together with the presence of mature spermatozoa. Small oocytes are present in specimens reaching about 20–25 mm in length. Therefore oogenesis seems to begin early during the first year of life, but the first reproduction can occur when the worms attain a larger size and are at least 6 months of age. Although most of the individuals reproduce seasonally within a discrete period, some individuals can reproduce in different periods during the year, the oogenesis of individuals not being synchronous. A life span of at least 2 years is highlighted, with a faster growth rate during the first months (about 20 mm per month) decreasing to about 10 mm from the 3rd to the 8th months and slowing down again after the worm reaches 100 mm in size. Some differences in growth performance are discussed, enhanced by comparing the sites located at greater depth (5–7 m) and those located at 0.5 m depth, together with the possible interactions of this alien species with the autochthonous sabellid Sabella spallanzanii.     

Reefs at the edge: coral community structure around Rapa,southernmost French Polynesia

Rapa (27°36′ S, 144°20′ W) is a small (~40 km²) volcanic island isolated in the Southern Austral Archipelago, where direct anthropogenic stressors are extremely limited. Here, we present the results of the first quantitative survey of coral community structure across habitats and depths around the island. Despite its geographical isolation in the depauperate South Central Pacific, its small size and unfavourable environmental conditions (competition with macroalgae, low sea surface temperatures, reduced reef accretion), the diversity of scleractinian corals at Rapa is particularly high (112 species from 32 genera, including 37 species of Acropora) in comparison to other French Polynesian islands and subtropical Pacific locations. Our results indicate that the abundance (>100 colonies per 10 m² recorded at nine of the 17 sampling stations) and cover (>40% at four stations) of corals are relatively high for a marginal reef location. Strong spatial heterogeneity was found, with high variation in diversity, abundance, cover and community composition among stations. Variation in community composition was related to habitat types, with distinct assemblages among fringing reefs within bays, reef formations at bay entrances, and those on the submerged platform surrounding the island. On the platform, a depth gradient was detected, with generic richness, abundance and cover generally greater at deeper stations (18–20 m depth) compared with medium‐depth (10–12 m) and shallow (1–3 m) stations. A gradient was also recorded along bays, with increasing coral diversity and abundance from the bay heads to the bay entrances. The coral community at Rapa was characterized by the presence of several taxa not found in other French Polynesian archipelagos and the rarity of others that are common and abundant in the Society and the Tuamotu islands. Another distinctive feature of reef communities at Rapa is the high cover and dominance of macroalgae, particularly in the shallower parts of the surrounding platform, which probably explains the lower densities of coral colonies recorded there. These characteristics of the diversity and biogeographical composition of coral assemblages at Rapa provide considerable ecological grounds for its conservation.     

Current status of coral takeover by an encrusting excavating sponge in a Caribbean reef

On Caribbean reefs, the excavating sponge Cliona tenuis opportunistically colonized dead skeletons of the elkhorn coral Acropora palmata after its massive die‐off in the 1980s. Further C. tenuis population increase occurred by colonization of other coral species, causing coral tissue death through undermining of live tissue and lateral growth. To follow up on a previous (2001) characterization of the abundance and size structure of C. tenuis at Islas del Rosario (Colombia), these factors were again estimated in 2014, along with its substratum utilization. The fate of sponge individuals colonizing massive coral colonies marked in 2001–2004 was also followed. By 2014 C. tenuis was still disproportionally occupying dead A. palmata branches, but its abundance and density, and the cover of other benthic elements, had not significantly changed over the 13‐year period, suggesting that a stasis has been reached. Cliona tenuis was thus initially favored in the 1980s, but substratum monopolization did not occur. From 2001 to 2014, small individuals increased in number and very large ones decreased, suggesting not only that new recruitment is occurring, but also that larger sponges are shrinking or fragmenting. Marked sponges continued killing corals over the first few years, but over longer times they retreated or died, allowing corals to resume upward growth. However, it could not be ascertained whether the sponge retreat was age‐related or the result of some environmental effect. The apparent preference for recently dead clean coral by larvae of C. tenuis and its current dynamics of recruitment, growth, fragmentation and mortality have stabilized its space occupation at Islas del Rosario.     

Benthic Foraminifera as ecological indicators for water quality on the Great Barrier Reef

Benthic foraminifera are established indicators for Water Quality (WQ) in Florida and the Caribbean. However, nearshore coral reefs of the Great Barrier Reef (GBR) and other Pacific regions are also subjected to increased nutrient and sediment loads. Here, we investigate the use of benthic foraminifera as indicators to assess status and trends of WQ on GBR reefs. We quantified several sediment parameters and the foraminiferan assemblage composition on 20 reefs in four geographic regions of the GBR, and along a water column nutrient and turbidity gradient. Twenty-seven easily recognisable benthic foraminiferan taxa (>63 μm) were distinguished. All four geographic regions differed significantly (p < 0.05, ANOSIM) in their assemblage composition, and a redundancy analysis (RDA) showed that sediment parameters only explained a small proportion of the variance in the assemblage composition. On nine reefs along a previously studied water quality gradient, foraminifera showed a distinct shift in assemblage composition towards larger symbiont-bearing taxa from turbid inner shelf towards clearer outer shelf reefs. A RDA separated symbiotic and aposymbiotic (heterotrophic) taxa. In addition, total suspended solid and water column chlorophyll a concentrations were negatively correlated, and optical depth and distance to the mainland were positively correlated, with the abundance of symbiont-bearing taxa. Several large foraminifera were identified as indicators for offshore, clear water conditions. In contrast, heterotrophic rotaliids and a species retaining plastids (Elphidium sp.) where highly characteristic for low light, higher nutrient conditions. Application of the FORAM index to GBR assemblage composition showed a significant increase in the value of this index with increased distance from the mainland in the Whitsunday region (r² = 0.75, p < 0.001), and therefore with increasing light and decreased nutrient availability. We conclude that it will be possible to apply this index to GBR and possibly other Pacific reefs after some adaptations and additional experimental work on species-specific limiting factors.     

Coral colonization by the encrusting excavating Caribbean sponge Cliona delitrix

The Caribbean sponge Cliona delitrix is among the strongest reef space competitors; it is able to overpower entire coral heads by undermining coral polyps. It has become abundant in reefs exposed to organic pollution, such as San Andrés Island, Colombia, SW Caribbean. Forty‐four sponge‐colonized coral colonies were followed‐up for 13 months to establish the circumstances and the speed at which this sponge advances laterally into live coral tissue and the coral tissue retreats. Cliona delitrix presence and abundance was recorded at seven stations to interpret current reef space and coral species colonization trends. The spread of C. delitrix on a coral colony was preceded by a band of dead coral a few millimeters to several centimeters wide. However, the sponge was directly responsible for coral death only when live coral tissue was within about 2 cm distance; coral death became sponge advance‐independent at greater distances, being indirectly dependent on other conditions that tend to accelerate its retreat. Cliona delitrix advanced fastest into recently killed clean coral calices; however, sponge spread slowed down when these became colonized by algae. The lateral advance of C. delitrix was slower than other Cliona spp. encrusting excavating sponges, probably owing to the greater depth of its excavation into the substratum. Cliona delitrix prefers elevated portions of massive corals, apparently settling on recently dead areas. It currently inhabits 6–9% of colonies in reefs bordering San Andrés. It was found more frequently in Siderastrea siderea (the most abundant local massive coral), which is apparently more susceptible to tissue mortality than other corals. Current massive coral mortality caused by C. delitrix could initially change the relative proportions of coral species and in the long‐term favor foliose and branching corals.     

Life after death: shallow‐water Mediterranean invertebrate communities associated with mammal bones

Invertebrate and microbial marine communities associated with mammal bones are interesting and poorly understood habitats, mainly known from studies on deep‐water whale remains. In order to characterize these communities in the shallow‐water Mediterranean, we present here the results of a pioneering experiment using mammal bones. Minke whale, pig and cow bones were experimentally deployed on three different background communities: rocky substrate, soft‐bottom and a Posidonia oceanica meadow. Bones were deployed for a year at about 20 m depth and collected every 3 months, and the invertebrate fauna colonizing the bones was identified to the lowest possible taxonomic level. As expected, mammal bones showed remarkable differences when compared with background communities. Within bones, four different clusters could be identified, primarily on the basis of the polychaete fauna, the most abundant and diverse group in the survey. Clusters A1–A3 corresponded to high to moderately altered successional stages composed by a fauna closer to that of anthropogenically enriched shallow‐water environments. These clusters were characterized by the occurrence of the opportunist polychaetes Ophryotrocha puerilis, Neanthes caudata (Cluster A1), Protodorvillea kefersteini (Cluster A2) and Ophryotrocha alborana (Cluster A3). Cluster B was characterized by the presence of the polychaete Oxydromus pallidus together with typical invertebrate background fauna, which suggests that this community, after a year of deployment, was closer to that found in natural conditions. As opposed to similar shallow‐water studies in other geographic areas, no occurrence of the polychaete Osedax (commonly known as bone‐eating worms) was reported from our experiments. Apart from the study on the invertebrate communities, insights about the population dynamics of three of the most abundant species (O. puerilis, O. alborana, N. caudata) are given as well as remarks on a hypothetical trophic network based on fecal pellet analysis.