厌氧氨氧化细菌物种组成对环境因子响应的研究进展

分析海洋水体及沉积物中厌氧氨氧化细菌所处的环境条件,比较海洋与淡水环境中其物种组成的差异,总结了其物种组成、丰度及厌氧氨氧化活性对环境因子的响应规律。认为厌氧氨氧化细菌物种组成受多种环境因子的影响。其中,盐度为影响其物种组成的最显著因素,如Candidatus Brocadia,Candidatus Kuenenia及Candidatus Scalindua分别适应淡水、寡盐和海水环境;同一地区,其物种组成在不同季节表现出明显差异,夏季的多样性高于冬季的;根据陆源厌氧氨氧化细菌多样性及海洋沉积物中浮霉菌门多样性随深度增加而减小的趋势,推断海洋沉积物中厌氧氨氧化细菌多样性与深度成反比。厌氧氨氧化细菌丰度、厌氧氨氧化活性与温度、NO-2及NO-3浓度之间成正相关;丰度与季节的关系,在不同地区的研究结果存在差异。未来厌氧氨氧化细菌研究工作重点应在其对氧浓度的耐受范围、海洋中厌氧氨氧化细菌多样性随深度的变化规律、导致其物种组成、丰度及厌氧氨氧化活性季节性差异的具体环境因子。     

Bacterial abundance and production in different water masses around South Island,New Zealand

Abstract

Bacterial numbers and production were measured in the upper water column in the winter and spring of 1993 in five water masses surrounding the South Island of New Zealand. Average bacterial numbers and production were found to be higher in spring (8.5 × 10⁵ cells ml^?1 and 0.20 mg m³ h^?1, respectively) than winter (5.5 × 10⁵ cells ml^?1 and 0.05 mg C m³ h^?1 respectively). Bacterial production was strongly correlated with chlorophyll a and primary production (P < 0.001) in spring but not in winter. Spring bacterial production and at 10 m depth averaged across 28 stations was 23% of primary production, and with a growth efficency of 40%, may have consumed up to 57% of primary production. Bacterial biomass was greater than phytoplankton biomass for 75% of the 10 m depth comparisons during winter sampling and 44% during the spring sampling. The bacterial biomass was found to represent 24.6–33.5% of the nitrogen in particulate organic matter (<200 μm) supporting the concept that in New Zealand oceanic water masses bacteria are of significant biogeochemical importance.     

Carbon dioxide emission and carbon accumulation in coastal wetlands

Direct measurements of CO₂ fluxes were made in salt, brackish and freshwater marshes and parallel adjacent open water areas in Barataria Basin, Louisiana. Vertical flux density was determined by monitoring the accumulation of CO₂ in aluminum chambers placed over the water or sediment surfaces. Annual CO₂ fluxes were 418, 180 and 618 g Cm^?2 from the salt, brackish and freshwater marsh, respectively. Water bodies adjacent to the marsh evolved 103, 54 and 242 g CO₂-Cm^?2yr^?1 to the atmosphere from saline, brackish and freshwater lakes, respectively. The role these marshes play in serving as a major carbon sink was determined from the carbon content of the sediment, vertical accretion rates and the bulk density of the sediment. Accretion rates were calculated from the depth in the sediment of the 1963 horizon, the year of peak ¹³⁷Cs fallout. Net carbon accumulation was essentially the same in all three marshes; 183, 296 and 224 g Cm^?2yr^?1 from the salt, brackish and fresh marsh, respectively. Data presented suggest a limited net export of carbon from these coastal marshes. A large percentage of fixed carbon remained on the marsh, being immobilized in accretionary processes or lost to the atmosphere as CO₂.     

Nitrous oxide production and denitrification rates in estuarine intertidal saltmarsh and managed realignment zones

Increasing concerns over habitat loss and rising costs of sea defence maintenance due to rising sea levels, has seen increases in the practice of managed realignment and reflooding of former reclaimed areas of intertidal saltmarsh and mudflat around the world. These practices are taking place with little knowledge of their impact on soil biogeochemical processes. Rates of denitrification (using the acetylene inhibition technique) and nitrous oxide (N₂O) production were measured from a long-established saltmarsh (SM) and an adjacent, recently re-flooded managed realignment (MR) site comprising former arable land in the estuary of the River Torridge, Devon, UK. Incubations were carried out in closed chambers in which patterns of tidal flooding were simulated automatically. Measurements were made during periods of flood and non-flood over a total of four tidal inundations with estuarine water. During the latter two flooding episodes floodwater was amended with nitrate (NO₃⁻). Nitrous oxide production in the SM soil generally was lower than in the MR soil, with mean values and standard errors over the whole incubation of 0.27 ± 0.16 mg N₂O-N m⁻² h⁻¹ and 0.65 ± 0.15 mg N₂O-N m⁻² h⁻¹ respectively. Denitrification rates demonstrated a similar trend although generally were an order of magnitude higher than N₂O production, with mean rates and standard errors of 2.88 ± 1.12 mg N₂O-N m⁻² h⁻¹ in the SM soil and 3.39 ± 1.16 mg N₂O-N m⁻² h⁻¹ in the MR soil. The data suggest that both soils are net sinks for NO₃⁻ and net sources for N₂O. Both patterns of tidal inundation and floodwater chemistry affect the process rates in each soil differently. The impact of flooding with NO₃⁻ – amended water was greater on the SM soil than the MR soil, and it is likely that decomposing vegetation buried in the accreting sediments following reflooding at the MR site were supplying a source of N in the soil, and so process rates were less dependent upon external supplies. The act of managed realignment in intertidal zones could therefore result in an increase in mean production of N₂O in intertidal zones, at least in the short term.     

Quantifying saltmarsh vegetation and its effect on wave height dissipation: Results from a UK East coast saltmarsh

The degree to which incident wind waves are attenuated over intertidal surfaces is critical to the development of coastal wetlands, which are, amongst other processes, affected by the delivery, erosion, and/or resuspension of sediment due to wave action. Knowledge on wave attenuation over saltmarsh surfaces is also essential for accurate assessments of their natural sea-defence value to be made and incorporated into sea defence and management schemes. The aim of this paper is to evaluate the use of a digital photographic method for the quantification of marsh vegetation density and then to investigate the relative roles played by hydrodynamic controls and vegetation density/type in causing the attenuation of incident waves over a macro-tidal saltmarsh.Results show that a significant statistical relationship exists between the density of vegetation measured in side-on photographs and the dry biomass of the photographed vegetation determined through direct harvesting. The potential of the digital photographic method for the spatial and temporal comparison of marsh surface vegetation biomass, density, and canopy structure is highlighted and the method was applied to assess spatial and seasonal differences in vegetation density and their effect on wave attenuation at three locations on a macro-tidal saltmarsh on Dengie Peninsula, Essex, UK. In this environmental setting, vegetation density/type did not have a significant direct effect on wave attenuation but modified the process of wave transformation under different hydrodynamic conditions. At the two locations, characterised by a relatively tall canopy (15–26 cm) with biomass values of 430–500 g m⁻², dominated by Spartina spp. (>70% of total dry biomass), relative incident wave height (wave height/water depth) is identified as a statistically significant dominant positive control on wave attenuation up to a threshold value of 0.55, beyond which wave attenuation showed no significant further increase. At the third location, characterised by only slightly less biomass (398 g m⁻²) but a shorter (6 cm) canopy of the annual Salicornia spp., no significant relationship existed between wave attenuation and relative wave height. Seasonally (between September and December) significant temporal increase/decrease in vegetation density occurred in one of the Spartina canopies and in the Salicornia canopy, respectively, and led to an expected (but not statistically significant) increase/decrease in wave attenuation. The wider implications of these findings in the context of form–process interactions on saltmarshes and their effect on marsh evolution are also discussed.     

Porewater-derived dissolved inorganic carbon and nutrient fluxes in a saltmarsh of the Changjiang River Estuary

Saltmarshes are one of the most productive ecosystems, which contribute significantly to coastal nutrient and carbon budgets. However, limited information is available on soil nutrient and carbon losses via porewater exchange in saltmarshes. Here, porewater exchange and associated fluxes of nutrients and dissolved inorganic carbon(DIC) in the largest saltmarsh wetland(Chongming Dongtan) in the Changjiang River Estuary were quantified. Porewater exchange rate was estimated to be(37±35) cm/d during December 2017 using a radon(~(222)Rn) mass balance model. The porewater exchange delivered 67 mmol/(m~2·d), 38 mmol/(m~2·d) and 2 690 mmol/(m~2·d) of dissolved inorganic nitrogen(DIN), dissolved silicon(DSi) and DIC into the coastal waters,respectively. The dominant species of porewater DIN was NH_4~+ (99% of DIN). However, different with those in other ecosystems, the dissolved inorganic phosphorus(DIP) concentration in saltmarsh porewater was significantly lower than that in surface water, indicating that saltmarshes seem to be a DIP sink in Chongming Dongtan. The porewater-derived DIN, DSi and DIC accounted for 12%, 5% and 18% of the riverine inputs, which are important components of coastal nutrient and carbon budgets. Furthermore, porewater-drived nutrients had obviously high N/P ratios(160–3 995), indicating that the porewater exchange process may change the nutrient characteristics of the Changjiang River Estuary and further alter the coastal ecological environment.     

4株琼胶降解菌的分离、鉴定及产酶条件分析

从海藻及海参中分离筛选得到4株琼胶降解菌HD、JL、QJ和HS,均为革兰氏阴性菌,确定了它们发酵产酶的最佳条件均为：2216E海水培养基、初始 Ph 7.5、琼胶底物浓度0.30%、培养温度28℃、培养时间36 h。大部分酶分泌到细菌细胞外。生理生化检测、16SrDNA序列同源性及聚类分析结果表明, HD、JL、HS为白色噬琼胶菌(Agarivorans albus);QJ的16SrDNA序列与Simiduia sp.,糖噬胞菌属( Saccharophagus sp.)和船蛆杆菌(Teredinibacter sp.)的相似性为93%~94%,在进化树上单独形成一个分支,但生理生化特征与它们有所不同,分类地位需要进一步确定。从HD、JL和HS中能克隆到β-琼胶酶基因,它们与其他物种的β-琼胶酶基因序列的相似性为97%~98%。     

The influence of cadmium contamination and salinity on the survival,growth and phytoremediation capacity of the saltmarsh plant Salicornia ramosissima

The major aim of this study was to evaluate the capacity of Salicornia ramosissima on Cadmium phytoremediation under distinct salinities and, consequently, the toxic effects on the plant's development. A greenhouse experiment was performed, using two Cd concentrations (50 and 100 μg l⁻¹) in different salinities (0, 5 and 10). Mortality and weight variation, observed at the end of the experiment, showed significant differences between some treatments, meaning that these variables were affected by the salinity and Cd concentrations. The highest Cd accumulation was detected in the roots, and decreased with the increase of salinity and Cd concentration. S. ramosissima is a potential candidate for Cd phytoremediation at salinities close to 0 and its capabilities in Cd phytoaccumulation and phytoestabilization proved to be quite interesting. The optimization of phytoremediation processes by S. ramosissima could turn possible the use of this plant in the recovery of contaminated ecosystems.     

Effect of Hydrocarbons and Decontaminating Substances on Bacterial Flora of Coastal Sediments

Abstract. Seventy six samples of coastal sediments collected in the Straits of Messina were studied in order to evaluate the effects of an oil spill and the consequent "clean-up" operations on heterotrophic acrobic bacteria.
In addition, in vitro tests were carried out to estimate the effects of five dispersants on the growth and oil degrading capacity of marine strains isolated from the same sediments.     

壳寡糖对虹鳟幼鱼肠道菌群影响的研究

研究壳寡糖对虹鳟幼鱼肠道菌群的影响。以5 g左右的虹鳟(Oncorhynchus mykiss)幼鱼为实验对象,在其饲料中分别添加浓度为20 mg.kg-1(COS20组),40 mg.kg-1(COS40组),60 mg.kg-1(COS60组)的壳寡糖,另设1组不加壳寡糖的对照组(COS0组)。在养殖56 d后,对肠道菌群的数量、组成,利用壳寡糖作为惟一碳源的肠道细菌以及虹鳟幼鱼抗嗜水气单胞菌感染情况进行了检测。结果显示,各组虹鳟幼鱼肠内细菌的总数之间没有显著差异(p>0.05),但各组的肠道优势菌有所变化:COS20组的为棒杆菌属(Corynebacterium),COS40组的为不动杆菌属(Acinetobacter)和气单胞菌属(Aeromonas),而COS60组和COS0组的虽然均为不动杆菌属(Acinetobacter),但在比例上有差异,而且各实验组肠道菌群的多样性降低,肠杆菌科(Enterobacteriaceae)和假单胞菌属(Pseudomonas)减少或消失了,说明壳寡糖对虹鳟幼鱼肠道菌群的组成产生了影响。另外,各实验组能够利用壳寡糖作为惟一碳源的菌株数量多于对照组,尤其是COS40组和COS60组,这种差异表明,能够利用壳寡糖作为惟一碳源的菌株数量受到壳寡糖及其浓度的影响。抗感染实验结果表明,壳寡糖能够提高虹鳟幼鱼抗嗜水气单胞菌感染的能力。     

Studies of a mangrove basin,Tuff Crater,New Zealand: I. Mangrove biomass and production of detritus

The mangrove, Avicennia marina var. resinifera in a tidally-flooded explosion crater, Tuff Crater, near the southern latitudinal limit of mangroves in New Zealand adopts two distinct growth forms, taller tree-like mangroves up to 4 m tall along the banks of the tidal creek, and low stunted shrub mangroves less than 1 m tall on the mudflats. Twelve trees were felled and on the basis of a biomass/height relationship for the taller trees and a biomass/canopy width relationship for the lower, above-ground biomass (excluding pneumatophores) was estimated. Average above-ground biomass for the taller mangrove was estimated to be 104·1 t ha^?1 and for the lower 6·8 t ha^?1. While the value for the taller mangroves is similar to figures reported for more complex tropical mangroves, the fact that 94% of the basin is covered by low generally sparse mangroves means that total biomass for the basin is estimated to be 153 t, an average of only 7·6 t ha^?1. Litter-fall beneath the taller mangroves is estimated as 7·6±2·5 t ha^?1 a^?1 and beneath the lower mangroves 3·3±0·5 t ha^?1 a^?1. The value for the taller mangroves is similar to that reported from mangroves in many other parts of the world, but because of the extensive low sparse mangroves the total for the basin is estimated as 53·7 t a^?1, an average rate of 2·7 t ha^?1 a^?1, a very low rate of litter-fall when compared with elsewhere. Decomposition of mangrove leaves occurs relatively rapidly with leaves losing half their dry weight in 10 weeks and then continuing to degrade but at a slower rate. Substrate sediment samples contain high organic matter content, and although some organic matter appears to be exported via the tidal creek, a proportion of the detrital production is evidently recycled in situ.     

Symbiotic Relations of Sediment-Agglutinating Nematodes and Bacteria in Detrital Habitats: The Enzyme-Sharing Concept

Abstract. A new concept (‘enzyme sharing’) concerning the interaction of marine nematodes and microbes in the degradation of sedimentary detritus is presented. Elements of this concept are (1) the notorious tendency of many aquatic nematodes to agglutinate detrital particles by mucus secretions, (2) new observations on the stimulation of microbial growth by nematodes in agar plates, and (3) literature data on limited endogenous proteolytic capacities of aquatic nematodes.
Observations on nematode‐microbe associations in agar plates prompted the conceptual synthesis. In agar medium without the addition of any nutrients a spectacular growth of bacteria was visible on the sinusoidal crawling trails of nematodes only 2 – 3 days after introduction of the worms (species of Adoncholaimus, Anoplostoma and Sabatieria). Juveniles of Anoplostoma that hatched in the agar cultures left their minute trails in the medium and these were rapidly occupied by bacteria. The nematodes repeatedly visited their bacterial trails, which persisted as a peculiar biotic structure for more than one year and survived the nematodes.
In sterile agar preparations containing the fluorogenic methylumbelliferyl‐β‐glucoside in the presence of the nematode Adoncholaimus, an enhanced fluorescence of the medium was visible, indicating β‐glucosidase activity. We therefore assume that oncholaimid nematodes discharge enzymes that alone, or in concert with microbial activities, contribute to the hydrolytic cleavage of refractory polysaccharides containing β‐glucosidic bonds such as agar components and cellulose. The sugars thus produced may then be taken up by the nematodes and concomitantly support the conspicuous growth of microbes. Since we did not observe any feeding of the nematodes on the associated microbes in agar plates, we question the nutritive potential of intact microbial cells for a number of nematodes abounding in detrital habitats, and call attention to the significance of ambient dissolved or adsorbed organic monomeric nutrients.
Consequently, we perceive the puzzling perpetual accretion of detrital organic particles to sediment agglutinations by nematodes as an adaptation for operating an ‘enzymatic reactor’ for the production of dissolved nutrients. We hypothesise a relationship of mutual commensalism of nematodes and heterotrophic microbes in detrital habitats and propose the term ‘enzyme sharing’ for this relationship. Both parties invest in a common enzyme pool that decomposes organic detritus for their nutrition. We present here evidence that nematodes contribute β‐glucosidase, which is involved in the cellulase system. Data from the literature suggest that microbial enzymatic processing of detrital proteins yields amino acids available to nematodes, which apparently have no efficient proteolytic enzyme system in their intestines.     

An energy conversion system based on deep-sea pressure

A novel seawater pressure energy conversion system that utilizes seawater pressure to generate electricity has been studied in this paper. The energy conversion system utilizes the pressure difference between the pressurized seawater and the empty pressure container to drive hydraulic motor and the coaxially coupled generator to generate electric power. The output electric energy is recorded by the data logger throughout the process. In the current study, technical analysis is performed with the emphasis on conversion efficiency between seawater pressure energy and output electric energy. The analysis is conducted at various pressure differences through the throttle valve so as to obtain maximum conversion efficiency. Research shows that the optimum pressure difference through the throttle valve and the maximum conversion efficiency can be theoretically calculated when the properties of the conversion system are given. Simulation results have demonstrated the influence of pressure difference on conversion efficiency. The test apparatus has been designed, built and tested in 2004. It successfully generated electric energy of approximately 0.85 kW h at the depth of 2400 m with empty pressure container's holding capacity of 200 L in the voyage “DY105-16” in South China Sea on June 12, 2004. The actual conversion efficiency from seawater pressure energy to electric energy reaches as high as 63.8% which is attractive for underwater equipments. The success of the experiment has tested the feasibility of utilizing seawater pressure energy and brings a new power supply way for long-term in-situ underwater equipments.     

Mangrove (Avicennia marina subsp. australasica) litter production and decomposition in a temperate estuary

Mangrove forests can provide important cross-boundary subsidies of organic matter to adjacent habitats through the production, export, decomposition and assimilation of litter. We quantified two of these components in a temperate mangrove forest in Whangamata Harbour, New Zealand: 1) litter production; and 2) decomposition rates as a function of tidal elevation, sediment type and burial depth. Litter traps sampled monthly for a year measured an annual detrital input of 3.24–5.38 t DW ha^?1, of which 77% occurred in summer. Decomposition rates depended on litter type, with leaves decomposing faster (63 d to decay by 50%) than pneumatophore and wood material (316 and 460 d, respectively). Buried leaf and wood litter decomposed 1.3–1.4 times slower than litter on the sediment surface; however, tidal elevation and sediment type (mud vs. sand) had no effect. The slow decay of litter (an order of magnitude slower than tropical mangrove litter) suggests that its incorporation into temperate marine food webs may be relatively slow.     

Studies on the role of marine bacteria in the upwelling ecosystem——Ⅰ.Bacterial biomass in the upwelling regions

-Six cruises were carried out off the south bank of Fujian - Taiwan during the period of December 21, 1987 to November 15, 1988 to estimate the contribution of bacterial biomass carbon (BBC) to the totai particulate organic pools using epifluorescent microscopic technique. The results show that the standing crop of bacteria fluctuated from 0. 95 to 66. 60 mg /m3 (dry weight). Upwelling phenomena appeared in the region around Nanpeng Island in summer while in the region of Waixie in all seasons. The average value of BBC was 27. 60(±6. 08)mg/m3and 21. 32 (±2. 34) mg/m3 respectively. The seasonal and spatial distribution is discussed in relation to environmental factors as well as upwelling phenomena. The role of bacteria in the flow of material and energy in the upwelling ecosystem is emphasized.     

Seasonal Changes in Nano/Micro-Zooplankton Herbivory and Heterotrophic Nano-Flagellates Bacterivory off Cape Esan, Southwestern Hokkaido, Japan

Seasonal changes in nano/micro-zooplankton grazing on pico-, nano- and micro-size phytoplankton and heterotrophic nano-flagellates (HNF) feeding on heterotrophic bacteria were quantified by the dilution technique in the surface layer off Cape Esan, southwestern Hokkaido, Japan. Pico- and nano-size phytoplankton were major components throughout the year except in spring when a diatom bloom was observed. Although there was little seasonal variation in bacteria and HNF biomass throughout the year, the micro-zooplankton biomass varied appreciably with a peak in spring. Nano/micro-zooplankton grazing or feeding on pico-size chl-a and bacteria were well balanced throughout the year. However, nano-size and micro-size chl-a growth were much greater than grazing in summer. Nano/micro-zooplankton ingestion of phytoplankton was greater than their ingestion of bacteria almost throughout the year, which suggests phytoplankton are more important as food sources of nano/micro-zooplankton in microbial food webs off Cape Esan than bacteria off Cape Esan. This revised version was published online in July 2006 with corrections to the Cover Date.     

Phylogenetic analysis of aerobic anoxygenic phototrophic bacteria and their relatives based on farnesyl pyrophosphate synthase gene

The study aims to reveal phylogenetic and evolutionary relationship between aerobic anoxygenic phototrophic bacteria (AAnPB) and their relatives, anaerobic anoxygenic phototrophic bacteria (AnAnPB) and nonphototrophic bacteria (NPB, which had high homology of 16S rDNA gene with AAnPB and fell into the same genus), and validate reliability and usefulness of farnesyl pyrophosphate synthase (FPPS) gene for the phylogenetic determination. FPPS genes with our modified primers and 16S rDNA genes with general primers, were amplified and sequenced or retrieved from GenBank database. In contrast to 16S rDNA gene phylogenetic tree, AAnPB were grouped into two clusters and one branch alone with no intermingling with NPB and AnAnPB in the tree constructed on FPPS. One branch of AAnPB, in both trees, was located closer to outgroup species than AnAnPB, which implicated that some AAnPB would be diverged earlier in FPPS evolutionary history than AnAnPB and NPB. Some AAnPB and NPB were closer located in both trees and this suggested that they were the closer relatives than AnAnPB. Combination codon usage in FPPS with phylogenetic analysis, the results indicates that FPPS gene and 16S rRNA gene have similar evolutionary pattern but the former seems to be more reliable and useful in determining the phylogenic and evolutionary relationship between AAnPB and their relatives. This is the first attempt to use a molecular marker beside 16S rRNA gene for studying the phylogeny of AAnPB, and the study may also be helpful in understanding the evolutionary relationship among phototrophic microbes and the trends of photosynthetic genes transfer.     

Temporal Variations of Benthic Bacterial Microflora on the Northwestern Mediterranean Continental Shelf and Slope

Abstract. Bacterial (direct and heterotrophic counts, heterotrophic potentials) and organic matter (org C, org N) parameters were studied over 2 years in the surface sediments of 3 stations located on the continental shelf (station A: 15m; station B: 35m) and slope (station C: 910m) in the northwestern Mediterranean Basin.
Although logistic constraints did not allow a satisfactory sampling periodicity in the offshore survey, some seasonal trends were still observable at the deepest station. Variations were quantitatively more important in the two shallow sediments (from 3×10² heterotrophic bacteria – ml^-1 in December 1984 to 10⁷ heterotrophic bacteria-ml^-1 in March 1986). Epifluorcsccncc direct counts were relatively constant (5×10⁸ cells-ml^-1), while heterotrophic potentials (with ¹⁴C labelled glucose and glutamic acid) showed a succession of very short pulses over the year. Different concentrations of organic matter (from 0.2% orgC at 15m to 0.8% orgC at 35m) appeared to sustain very similar bacterial numbers. Nevertheless, a certain relation between the seasonal evolution of bacterial and organic matter parameters was discernable. Although depth apparently had no measurable effect on maximal spring bacterial densities, it seemed to lessen the summer and winter decreases in the two shallow stations.