Coral reef health and effects of socio-economic factors in Fiji and Cook Islands

This research focuses on coral reef health in the South Pacific region, an area of high global coral diversity. Coral reef health surrounding four island case studies in the Cook Islands and Fiji have been assessed in areas that have not been previously surveyed. This study compares four islands with barrier and fringing reefs that have different levels of economic development, population pressure, land-use practices, and marine management practices. This interdisciplinary research methodology includes both ecological and social data collection to further understanding of human environment interactions. In comparing the reefs with different socio-economic factors, this research shows that reefs with traditional systems of resources management are healthier, population pressure is not the main factor causing the demise of the reefs and agro-industry is the main industry causing the degradation of the reef in these four South Pacific Islands. In addition, researchers need to use a whole reef perspective to examine coral reef health.     

Monitored and modeled coral population dynamics and the refuge concept

With large-scale impacts on coral reefs due to global climatic change projected to increase dramatically, and suitability of many areas for reef growth projected to decrease, the question arises whether particular settings might serve as refugia that can maintain higher coral populations than surrounding areas. We examine this hypothesis on a small, local scale in Honduras, western Caribbean. Dense coral thickets containing high numbers of the endangered coral Acropora cervicornis occur on offshore banks while being rare on the fringing reef on nearby Roatán. Geomorphological setting and community dynamics were evaluated and monitored from 1996 to 2005. A model of population dynamics was developed to test assumptions derived from monitoring. Coral cover on the fringing reef declined in 1998 from >30% to <20%, but the banks maintained areas of very dense coral cover (32% cover by A. cervicornis on the banks but <1% on the fringing reef). Bathymetry from satellite images showed the banks to be well-separated from the fringing reef, making asexual connectivity between banks and fringing reef impossible but protecting the banks from direct land-runoff during storms. Exposure to SE tradewinds also causes good flushing. Only four A. cervicornis recruits were recorded on the fringing reef over 6 years. Runoff associated with hurricanes caused greater mortality than did bleaching in 1998 and 2005 on the fringing reef, but not on the banks. Since 1870, our analysis suggests that corals on the banks may have been favored during 17 runoff events associated with tropical depressions and storms and potentially also during five bleaching events, but this is more uncertain. Our model suggests that under this disturbance regime, the banks will indeed maintain higher coral populations than the fringing reef and supports the assumption that offshore banks could serve as refugia with the capacity to subsidize depleted mainland populations.     

Heavy metal contamination from gold mining recorded in Porites lobata skeletons, Buyat-Ratototok district, North Sulawesi, Indonesia

Shallow marine sediments and fringing coral reefs of the Buyat-Ratototok district of North Sulawesi, Indonesia, are affected by submarine disposal of tailings from industrial gold mining and by small-scale gold mining using mercury amalgamation. Between-site variation in heavy metal concentrations in shallow marine sediments was partially reflected by trace element concentrations in reef coral skeletons from adjacent reefs. Corals skeletons recorded silicon, manganese, iron, copper, chromium, cobalt, antimony, thallium, and lead in different concentrations according to proximity to sources, but arsenic concentrations in corals were not significantly different among sites. Temporal analysis found that peak concentrations of arsenic and chromium generally coincided with peak concentrations of silica and/or copper, suggesting that most trace elements in the coral skeleton were incorporated into detrital siliciclastic sediments, rather than impurities within skeletal aragonite.     

Honduras: Caribbean Coast

The coast of Honduras, Central America, represents the southern end of the Mesoamerican Barrier Reef System, although its marine resources are less extensive and studied than nearby Belize and Mexico. However, the coastal zone contains mainland reef formations, mangroves, wetlands, seagrass beds and extensive fringing reefs around its offshore islands, and has a key role in the economy of the country. Like most tropical areas, this complex of benthic habitats experiences limited annual variation in climatic and oceanographic conditions but seasonal and occasional conditions, particularly coral bleaching and hurricanes, are important influences. The effects of stochastic factors on the country's coral reefs were clearly demonstrated during 1998 when Honduras experienced a major hurricane and bleaching event. Any natural or anthropogenic impacts on reef health will inevitably affect other countries in Latin America, and vice versa, since the marine resources are linked via currents and the functioning of the system transcends political boundaries. Much further work on, for example, movement of larvae and transfer of pollutants is required to delineate the full extent of these links.

Anthropogenic impacts, largely driven by the increasing population and proportion of people living in coastal areas, are numerous and include key factors such as agricultural run-off, over-fishing, urban and industrial pollution (particularly sewage) and infrastructure development. Many of these threats act synergistically and, for example, poor watershed management via shifting cultivation, increases sedimentation and pesticide run-off onto coral reefs, which increases stress to corals already affected by decreasing water quality and coral bleaching. Threats from agriculture and fishing are particularly significant because of the size of both industries. The desire to generate urgently required revenue within Honduras has also led to increased tourism which provides an over-arching stress to marine resources since most tourists spend time in the coastal zone. Hence the last decade has seen a dramatic increase in coastal development, a greater requirement for sewage treatment and more demand for freshwater, particularly in the Bay Islands.

Although coastal zone management is relatively recent in Honduras, it is gaining momentum from both large-scale initiatives, such as the Ministry of Tourism's ‘Bay Islands Environmental Management Project', and national and international NGO projects. For example, a series of marine protected areas and legislative regulations have been established, but management capacity, enforcement and monitoring are limited by funding, expertise and training. Existing and future initiatives, supported by increased political will and environmental awareness of stakeholders, are vital for the long-term economic development of the country.     

A relic coral fauna threatened by global changes and human activities, Eastern Brazil

Coral species composition of drilled cores from emergent bank reefs, and coral cover of the surface of old and living reefs located along the coast of the state of Bahia, Eastern Brazil, revealed that there is a marked change in the occurrence of the major building coral species in different time intervals of the reef structure, as well as in the living surface of reefs located in two different geographical sites. Holocene core sections from two reef areas (12 degrees 40'S-38 degrees 00'W and 18 degrees 00'S-39 degrees 00'W) have as major reef builders, on its topmost core interval (3 to 4 ky old), the endemic coral Mussismilia braziliensis Verrill, 1868, which also dominate on the 2.5-3.5 ky old surfaces of truncated reef tops. At the base of the cores (the 2m lower interval, older than 4 ky BP), another endemic coral Mussismilia harttii Verrill, 1868 is the dominant reef component. The relative abundance of M. braziliensis on the living surfaces of shallow reefs from both areas, shows that in the southern area, it is up to 98% on reefs located 60 km off the coast, in depths between 3 and 4m, but do not exceed 1.3% on the surface of the northern reefs located 1-2 km off the coast in depths 4-5m. The Holocene falling sea level that occurred along the coast of Brazil since 5.1 ky BP, causes an increasing runoff into the area of coastal reefs. This phenomenon may have affected the nearshore reef building fauna, replacing a more susceptive coral fauna with one better adapted to low light levels and higher sediment influx. The high turbidity associated with early Holocene shelf flooding, should also be responsible for the absence of M. braziliensis during the initial stages of reef buildup in Brazil. At the present time, the rapidly increasing human pressure, due to changes in land uses of the coastal zone (increasing sedimentation rate, nutrification of coastal waters, industrial pollution) and underwater practices, such as overfishing and an intense tourism, is aggravating the recovery capacity of this already naturally threatened coral community. If this situation coupled with increasing sea surface temperature persists, modern coral reef growth, in Brazil cannot be maintained and the major reef building coral species of the reefs in Bahia, a remnant endemic coral fauna will very soon appear in the list of endangered species.     

Coral recruitment and potential recovery of eutrophied and blast fishing impacted reefs in Spermonde Archipelago,Indonesia

Coral recruitment was assessed in highly diverse and economically important Spermonde Archipelago, a reef system subjected to land-based sources of siltation/pollution and destructive fishing, over a period of 2 years. Recruitment on settlement tiles reached up to 705 spat m⁻² yr⁻¹ and was strongest in the dry season (July–October), except off-shore, where larvae settled earlier. Pocilloporidae dominated near-shore, while a more diverse community of Acroporidae, Poritidae and others settled in the less polluted mid-shelf and off-shore reefs. Non-coral fouling community appeared to hardly influence initial coral settlement on the tiles, although, this does not necessarily infer low coral post-settlement mortality, which may be enhanced at the near- and off-shore reefs as indicated by increased abundances of potential space competitors on natural substrate. Blast fishing showed no local reduction in coral recruitment and live hard coral cover increased in oligotrophic reefs, indicating potential for coral recovery, if managed effectively.     

Benthic status of near-shore fishing grounds in the central Philippines and associated seahorse densities

Benthic status of 28 near-shore, artisanal, coral reef fishing grounds in the central Philippines was assessed (2000-2002) together with surveys of the seahorse, Hippocampus comes. Our measures of benthic quality and seahorse densities reveal some of the most degraded coral reefs in the world. Abiotic structure dominated the fishing grounds: 69% of the benthos comprised rubble (32%), sand/silt (28%) and dead coral (9%). Predominant biotic structure included live coral (12%) and Sargassum (11%). Rubble cover increased with increasing distance from municipal enforcement centers and coincided with substantial blast fishing in this region of the Philippines. Over 2 years, we measured a significant decrease in benthic 'heterogeneity' and a 16% increase in rubble cover. Poor benthic quality was concomitant with extremely low seahorse densities (524 fish per km(2)). Spatial management, such as marine reserves, may help to minimize habitat damage and to rebuild depleted populations of seahorses and other reef fauna.     

Management of coral reefs: we have gone wrong when neglecting active reef restoration

The current best management tools employed in coral reefs worldwide do not achieve conservation objectives as coral reefs continue to degrade. Even improved reef management helps, at best, to reduce the degradation pace, whereas the worsening global changes foretell a dismal fate for coral reefs. The assertion made here is that the prospect for reefs' future is centered on omnipresent acceptance of restoration, an 'active' management instrument. A recent promising such tool is the 'gardening concept', influenced by the well-established scientific discipline of terrestrial forestation. This notion is supported by a two-step protocol. The first step entails rearing coral "seedlings", in specially designed underwater nurseries, to transplantable size, before applying the second step, out-planting into damaged areas of the nursery-farmed coral colonies. Only the establishment of large-scale nurseries and transplantation actions, together with conventional management tools, will be able to cope with extensive reef degradation on the global scale.     

Hydrodynamic response of a fringing coral reef to a rise in mean sea level

Ningaloo Reef, located along the northwest coast of Australia, is one of the longest fringing coral reefs in the world extending ~300 km. Similar to other fringing reefs, it consists of a barrier reef ~1–6 km offshore with occasional gaps, backed by a shallow lagoon. Wave breaking on the reef generates radiation stress gradients that produces wave setup across the reef and lagoon and mean currents across the reef. A section of Ningaloo Reef at Sandy Bay was chosen as the focus of an intense 6-week field experiment and numerical simulation using the wave model SWAN coupled to the three-dimensional circulation model ROMS. The physics of nearshore processes such as wave breaking, wave setup and mean flow across the reef was investigated in detail by examining the various momentum balances established in the system. The magnitude of the terms and the distance of their peaks from reef edge in the momentum balance were sensitive to the changes in mean sea level, e.g. the wave forces decreased as the mean water depth increased (and hence, wave breaking dissipation was reduced). This led to an increase in the wave power at the shoreline, a slight shift of the surf zone to the lee side of the reef and changes in the intensity of the circulation. The predicted hydrodynamic fields were input into a Lagrangian particle tracking model to estimate the transport time scale of the reef-lagoon system. Flushing time of the lagoon with the open ocean was computed using two definitions in renewal of semi-enclosed water basins and revealed the sensitivity of such a transport time scale to methods. An increase in the lagoon exchange rate at smaller mean sea-level rise and the decrease at higher mean sea-level rise was predicted through flushing time computed using both methods.     

Changes in algal, coral and fish assemblages along water quality gradients on the inshore Great Barrier Reef

Macroalgae, hard corals, octocorals, and fish were surveyed on 10 to 13 inshore coral reefs of the Great Barrier Reef, along a water quality gradient in two regions with contrasting agricultural land use. A water quality index was calculated for each reef based on available data of particulate and dissolved nutrients, chlorophyll and suspended solids. Strong gradients in ecological attributes occurred along the water quality gradient. Macroalgae of the divisions Rhodophyta and Chlorophyta increased with increasing nutrients, while Phaeophyta remained similar. Octocoral richness and abundances of many hard coral and octocoral taxa decreased, and none of the hundreds of species increased. At reefs in higher nutrient environments, hard coral and octocoral assemblages were composed of subsets of the many species found in lower nutrient environments, whereas fish and macroalgal assemblages consisted of contrasting suites of species. The study identifies species groups that are likely to increase or decrease in abundance with changing water quality.     

ENCORE: the effect of nutrient enrichment on coral reefs. Synthesis of results and conclusions

Coral reef degradation resulting from nutrient enrichment of coastal waters is of increasing global concern. Although effects of nutrients on coral reef organisms have been demonstrated in the laboratory, there is little direct evidence of nutrient effects on coral reef biota in situ. The ENCORE experiment investigated responses of coral reef organisms and processes to controlled additions of dissolved inorganic nitrogen (N) and/or phosphorus (P) on an offshore reef (One Tree Island) at the southern end of the Great Barrier Reef, Australia. A multi-disciplinary team assessed a variety of factors focusing on nutrient dynamics and biotic responses. A controlled and replicated experiment was conducted over two years using twelve small patch reefs ponded at low tide by a coral rim. Treatments included three control reefs (no nutrient addition) and three + N reefs (NH4Cl added), three + P reefs (KH2PO4 added), and three + N + P reefs. Nutrients were added as pulses at each low tide (ca twice per day) by remotely operated units. There were two phases of nutrient additions. During the initial, low-loading phase of the experiment nutrient pulses (mean dose = 11.5 microM NH4+; 2.3 microM PO4(-3)) rapidly declined, reaching near-background levels (mean = 0.9 microM NH4+; 0.5 microM PO4(-3)) within 2-3 h. A variety of biotic processes, assessed over a year during this initial nutrient loading phase, were not significantly affected, with the exception of coral reproduction, which was affected in all nutrient treatments. In Acropora longicyathus and A. aspera, fewer successfully developed embryos were formed, and in A. longicyathus fertilization rates and lipid levels decreased. In the second, high-loading, phase of ENCORE an increased nutrient dosage (mean dose = 36.2 microM NH4+; 5.1 microM PO4(-3)) declining to means of 11.3 microM NH4+ and 2.4 microM PO4(-3) at the end of low tide) was used for a further year, and a variety of significant biotic responses occurred. Encrusting algae incorporated virtually none of the added nutrients. Organisms containing endosymbiotic zooxanthellae (corals and giant clams) assimilated dissolved nutrients rapidly and were responsive to added nutrients. Coral mortality, not detected during the initial low-loading phase, became evident with increased nutrient dosage, particularly in Pocillopora damicornis. Nitrogen additions stunted coral growth, and phosphorus additions had a variable effect. Coral calcification rate and linear extension increased in the presence of added phosphorus but skeletal density was reduced, making corals more susceptible to breakage. Settlement of all coral larvae was reduced in nitrogen treatments, yet settlement of larvae from brooded species was enhanced in phosphorus treatments. Recruitment of stomatopods, benthic crustaceans living in coral rubble, was reduced in nitrogen and nitrogen plus phosphorus treatments. Grazing rates and reproductive effort of various fish species were not affected by the nutrient treatments. Microbial nitrogen transformations in sediments were responsive to nutrient loading with nitrogen fixation significantly increased in phosphorus treatments and denitrification increased in all treatments to which nitrogen had been added. Rates of bioerosion and grazing showed no significant effects of added nutrients. ENCORE has shown that reef organisms and processes investigated in situ were impacted by elevated nutrients. Impacts were dependent on dose level, whether nitrogen and/or phosphorus were elevated and were often species-specific. The impacts were generally sub-lethal and subtle and the treated reefs at the end of the experiment were visually similar to control reefs. Rapid nutrient uptake indicates that nutrient concentrations alone are not adequate to assess nutrient condition of reefs. Sensitive and quantifiable biological indicators need to be developed for coral reef ecosystems. The potential bioindicators identified in ENCORE should be tested in future research on coral reef/nutrient interactions. Synergistic and cumulative effects of elevated nutrients and other environmental parameters, comparative studies of intact vs. disturbed reefs, offshore vs. inshore reefs, or the ability of a nutrient-stressed reef to respond to natural disturbances require elucidation. An expanded understanding of coral reef responses to anthropogenic impacts is necessary, particularly regarding the subtle, sub-lethal effects detected in the ENCORE studies.     

Marine debris accumulation in the Northwestern Hawaiian Islands: an examination of rates and processes

Large amounts of derelict fishing gear accumulate and cause damage to shallow coral reefs of the Northwestern Hawaiian Islands (NWHI). To facilitate maintenance of reefs cleaned during 1996-2005 removal efforts, we identify likely high-density debris areas by assessing reef characteristics (depth, benthic habitat type, and energy regime) that influence sub-regional debris accumulation. Previously cleaned backreef and lagoonal reefs at two NWHI locations were resurveyed for accumulated debris using two survey methods. Accumulated debris densities and weights were found to be greater in lagoonal reef areas. Sample weight-based debris densities are extrapolated to similar habitats throughout the NWHI using a spatial 'net habitat' dataset created by generalizing IKONOS satellite derivatives for depth and habitat classification. Prediction accuracy for this dataset is tested using historical debris point data. Annual NWHI debris accumulation is estimated to be 52.0 metric tonnes. For planning purposes, individual NWHI atolls/reefs are allotted a proportion of this total.     

Turbidity regimes over fringing coral reefs near a mining site at Lihir Island,Papua New Guinea

An extensive sediment transport survey took place at Lihir Island (Papua New Guinea), where mining operations involve disposal of waste rocks and soil in nearshore waters. To investigate the potential impact of these practices over neighbouring fringing reefs, turbidity and sediment accumulation were measured continuously for extended periods. Turbidity records provided a map of observed impact zones based on turbidity thresholds. The main zoning features were (a) that an extreme turbidity gradient persists between the inner harbour (turbidity levels of 100-1000 mg l(-1)) and the adjacent reefs (turbidity levels in the order of 10 mg l(-1)), and (b) that observed zones conform with pre-operations impact predictions. Accumulation measurements unveiled no significant sediment accumulation over fringing coral reefs. This study contributes to the understanding of the potential impact of sediment discharge to nearshore waters.     

Photosystem II herbicide pollution in Hong Kong and its potential photosynthetic effects on corals

Photosystem II (PSII) herbicides have been shown to affect the photosynthesis of corals at low, environmentally relevant concentrations. The recent detection of the PSII herbicide Irgarol-1051 in coastal waters of Hong Kong at concentrations above the EC(50) for reduction of photosynthesis of corals prompted further investigation into the extent of PSII herbicide pollution in coral reefs of Hong Kong. Snap-shot and passive samples were taken from coral reef sites and evaluated via HPLC/MS-MS and a novel bioanalytical technique. Low concentrations (less than 10 ng L(-1)) of diuron and atrazine were found at all study sites. Extracts from these samples concentrated by a factor of 10 were found to reduce the photosynthetic yield of zooxanthellae. It appears unlikely that herbicide pollution is a key issue in isolation but may act synergistically with other stressors to reduce the viability of Hong Kong's coral reefs. The study has also demonstrated the feasibility of combining sample extraction techniques with a coral specific bioanalytical technique for a sensitive assessment of risks associated with herbicide exposure in corals.     

An assessment of the use of stabilized coal and oil ash for construction of artificial fishing reefs: Comparison of fishes observed on small ash and concrete reefs

Fishes present on small artificial reefs located 2 km off the central east coast of Florida (USA) were surveyed to determine the acceptability of using stabilized oil and coal ash residue as a component material in construction of artificial fishing reefs. Species richness was not significantly different over 2.5 yr on stabilized oil and coal ash reefs compared to concrete control reefs. Of 19 species tested for significant differences in mean abundance, lane snapper was observed at significantly higher mean abundances on fossil-fuel ash reefs (stabilized oil ash/coal fly ash), while three reef species (hairy blenny, porkfish and gray snapper) were significantly more common on concrete control reefs. Further study is needed to determine whether contaminants (Cu, V, Ni and Zn) from stabilized ash blocks can cause abundance differences for some fishes. Plausible alternate explanations for the differences in mean abundance include both interspecific interactions (competition and predation) and differences in the attraction or retention of fish among reef replicates due to slight variations in reef dimensions.     

Depositional environments of well‐sorted detrital limestone from the Minatogawa Formation in the southern part of Okinawa Island,the Ryukyu Archipelago,Japan

Well‐sorted detrital limestone is one of the typical lithofacies of the latest interval of the Pleistocene Ryukyu Group, which is exposed in the Ryukyu Archipelago in southwestern Japan. The depositional environments of the limestone are interpreted to be extremely shallow and to include back‐reef lagoons or moats and subaerial sand dunes. However, detailed micropaleontological analyses have not been performed on this limestone. In this study, the interpretation of the depositional environments and paleo‐water depths was improved by quantitative examination of foraminiferal assemblages for the well‐sorted detrital limestone of the Minatogawa Formation in the southern part of Okinawa Island. Thin sections of limestone collected from the Minatogawa (Horikawa) quarry were subjected to sedimentological and foraminiferal analyses. Comparison with modern foraminiferal distribution within the Ryukyu Archipelago indicates that back‐reef and fore‐reef dwelling foraminifers characterize the fossil assemblages from the well‐sorted detrital limestone (bioclastic grainstone). Three ratios of indicator foraminiferal taxa (ratios of back‐reef to fore‐reef taxa, planktonic foraminifers to Amphistegina lobifera and Amphistegina lessonii, and Calcarina gaudichaudii to other Calcarina species), as well as multivariate analyses suggest that the well‐sorted detrital limestone was deposited in fore‐reef setting shallower than 40 m in water depth. A comparable depth range was reconstructed from the coral assemblage in the associated coral limestone, suggesting that the Minatogawa Formation was deposited in a gently inclined ramp setting with patch reefs and/or fringing reefs. Stratigraphic changes in paleo‐water depth, together with evidence of several unconformities associated with paleosol layers suggest that there were repeated transgressions and regressions, with an amplitude up to several tens of meters, when the Minatogawa Formation was deposited.     

Metals in Pocillopora damicornis exposed to tin smelter effluent

Metal concentrations in tissues and skeleton of the coral Pocillopora damicornis were compared from intertidal reefs adjacent to a tin smelter at Phuket, Thailand. Tissue concentrations of ten metals were significantly higher for corals collected at the tin smelter than at control reefs, 1 km distant. Elevated tissue metal concentrations were considered not to be derived from particulate material but probably from solution. Analyses of skeletal material revealed no differences in metal concentrations between study sites. The implications of elevated tissue metal concentrations are discussed in relation to reduced growth rates and low abundance of branching coral species at the reef adjacent to the tin smelter when compared to the control reefs.     

A numerical study of the dynamics of the wave-driven circulation within a fringing reef system

The circulation driven by wave breaking, tides and winds within a fringing coral reef system (Ningaloo Reef) in Western Australia was investigated using the ocean circulation model ROMS two-way coupled to the wave model SWAN. Currents within the system were dominantly forced by wave breaking, with flow driven over the shallow reefs and towards the lagoon, which returned to the ocean through channels in the reef. Hindcast model simulations were compared against an extensive field dataset, revealing that the coupled wave–circulation model could accurately predict the waves and currents throughout this morphologically complex reef–lagoon system. A detailed momentum budget analysis showed that, over the reef, a dominant cross-shore balance was established between radiation stress gradients and a pressure (mean water level) gradient (similar to a beach). Within the lagoon, alongshore currents were primarily balanced by alongshore gradients in wave setup, which drove flow towards (and ultimately out) the channels. The importance of these wave-driven currents to Ningaloo Reef was quantified over a full seasonal cycle, during periods when wave and wind conditions significantly differed. These results showed that wave breaking still overwhelmingly dominated the circulation and flushing of Ningaloo Reef throughout the year, with winds playing an insignificant role.