Geochemical constraints on CO2-rich mantle source for the Kocebu Seamount,Magellan Seamount chain in the western Pacific

The alkaline oceanic island basalts(OIBs) with under-saturated SiO_2 and high contents of CaO and alkaline are usually attributed to mantle sources different from typical tholeiitic OIBs.Based on the results of high pressure and temperature experiment study,the genesis of silica under-saturated alkaline basaltic melts could be explained by the role of CO_2, thus,the genetic relationship of alkaline basalts with CO_2 has become a topic of relevance because it is closely related to the deep carbon cycle.The Magellan Seamount chain in the West Pacific Seamount Province has wide distribution of alkali basalts.For the first time,we collected alkaline basalt samples from the Kocebu Seamount of the Magellan Seamount chain and found that magmatic apatites widely occur in the less evolved volcanic rock samples,and the high contents of phosphorus should be a feature of the alkaline OIB s of the Magellan Seamounts.Compared with typical OIBs,these alkaline volcanic rocks have higher CaO and P_2 O_5, lower SiO_2 content,negative anomaly of high field strength elements(HFSEs),more distinctly negative anomaly of potassium(K) and the ubiquity of titanaugite,indicating a CO_2-rich mantle source.Based on the relatively high K2 O and TiO_2 contents and La/Yb ratio and low MgO content of these alkaline rocks,we suggest that the volcanic rocks of the Magellan Seamounts are originated from carbonated eclogites derived possibly from ancient subducted altered oceanic crust.     

Revealing an Invasion Risk of Fish Species in Qingdao Underwater World by Environmental DNA Metabarcoding

Environmental DNA(eDNA)metabarcoding has emerged as a potentially powerful tool to monitor invasive fish species.As an alternative(or complementary)tool for biodiversity monitoring,e DNA metabarcoding had been used to detect species in aquariums,which represents an important transit avenue for introducing non-indigenous species with high population densities.In this study,eDNA metabarcoding as well as morphological characterization were used to reveal the diversity of non-indigenous species in a large aquarium at Qingdao Underwater World.Environmental DNA metabarcoding of 14 water samples at five locations from the Big Water Tank detected 24 non-indigenous species and four putative non-indigenous operational taxonomic units(OTUs).In contrast,only 20 non-indigenous species were observed by morphological characterization.Some species undetected by morphological characterization,such as Oreochromis niloticus(Linnaeus,1758),are highly adaptable to various environments and/or have invaded preferred regions where they threaten native aquatic species.eDNA metabarcoding also detected seven local fishes that were not identified by morphological characterization.However,analysis of OTU diversity among stations and sample replications revealed that eDNA varied within and/or between stations.Increasing sampling effort as well as negative controls are required to increase the detection rate of species and to eliminate false-positive OTUs.     

Microbiostratigraphy and depositional environment of Eocene Shahbazan deposits at Chenareh section,southwest of Iran

The Shahbazan Formation was deposited in the foreland basin in southwestern Iran( Lorestan Basin). In this research,microbiostratigraphy and depositional environmental implications related to the Shahbazan Formation at the northern flank of Chenaerh anticline are discussed. Carbonate sequences of the Shahbazan Formation consist mainly of large benthic foraminifera along with other skeletal and non-skeletal components.Two biozones have been recognized by distribution of large foraminifera in the studied area that indicate middle Eocene age( Lutetian). Based on analysis of large benthic foraminiferal assemblages and microfacies features,7 different microfacies have been recognized,which can be grouped into three depositional environments: inner,middle and outer ramps.     

Microbial diversity in the sediments of the southern Mariana Trench

Microbial diversity in the abyssal sediments beneath the seafloor of 30, 94, and 151 cm near the southern end of the Mariana Trench was analyzed in the Illumina HiSeq 2500 platform. Results show that the microbial populations were dominated by bacteria but merely no archaea were identified at the three depths. In the bacterial community,Proteobacteria and Firmicutes dominated the total taxon tags, followed by Bacteroidetes, Actinobacteria, Planctomycetes, Cyanobacteria, and Chloroflexi, which together account for over 99% of the total population. Similar to that in the seawater in the trench, the operational taxonomic units(OTUs) belonging to Gammaproteobacteria from the sediment samples showed high abundance.However, common bacterial OTUs in the water of the trench including Nitrospirae and Marinimicrobia were hardly found in the sediments from the southern Mariana Trench or the hadal region. Therefore, this study documented for the first time the compositions of microbial diversity in the trench sediments, revealed the difference in microbial diversity in water and sediment of the trench and will enrich the knowledge on the microbial diversity in the abyssal areas.     

New technique for study on isotopic fractionation between sea water and foraminiferal growing processes

The stable isotopic δ¹⁸O and δ¹³C composition of foraminiferal shell calcite varies as a function of many factors including temperature and salinity. In order to understand and interpret the variations in the isotopic composition of foraminiferal shell calcite, research has been recently focused on the role of the “vital effects”. Our examination of the lamella structure of several recent planktonic foraminifera indicates that the secretion of sequential lamellae results in multiple lamillae on earlier chambers and a single lamella on the final chamber. We used a very simple procedure to separate the individual whole test of foraminifera into several chambers and measured the isotopic composition of each growth stage chamber. The results indicate that the stable isotopic composition (carbon and oxygen), particularly that of the last two chambers, of the foraminiferal test varies as a function of the individual growing process. Contribution No. 1847 from the Institute of Oceanology, Academia Sinica.     

Distinct influence of trimethylamine N-oxide and high hydrostatic pressure on community structure and culturable deep-sea bacteria

Trimethylamine N-oxide(TMAO) is one of the most important nutrients for bacteria in the deep-sea environment and is capable of improving pressure tolerance of certain bacterial strains.To assess the impact of TMAO on marine microorganisms,especially those dwelling in the deep-sea environment,we analyzed the bacterial community structure of deep-sea sediments after incubated under different conditions.Enrichments at 50 MPa and 0.1 MPa revealed that TMAO imposed a greater influence on bacterial diversity and community composition at atmospheric pressure condition than that under high hydrostatic pressure(HHP).We found that pressure was the primary factor that determines the bacterial community.Meanwhile,in total,238 bacterial strains were isolated from the enrichments,including 112 strains a ffiliated to 16 genera of 4 phyla from the Yap Trench and 126 strains a ffiliated to 11 genera of 2 phyla from the Mariana Trench.Treatment of HHP reduced both abundance and diversity of isolates,while the presence of TMAO mainly af fected the diversity of isolates obtained.In addition,certain genera were isolated only when TMAO was supplemented.Taken together,we demonstrated that pressure primarily defines the bacterial community and culturable bacterial isolates.Furthermore,we showed for the first time that TMAO had distinct influences on bacterial community depending on the pressure condition.The results enriched the understanding of the significance of TMAO in bacterial adaptation to the deep-sea environment.     

Foraminiferal Changes and Response to the Channel Diversion and Discharge Fluctuation of the Yellow River in the North Yellow Sea During the Past Century

Diversion of the Yellow River is a unique geological event in offshore China, causing changes of the sedimentary environment in eastern China Seas. The last diversion took place in AD 1855, with the estuary diverted from the Yellow Sea into the Bohai Sea. The identification of the river diversion events in the shelf sediments would not only provide the definite ages for the sediments, but also give a clue for better understanding of the sedimentation in that area. In this study, 210 Pb, grain size, geochemical element, and foraminiferal data in core H205 from the north Yellow Sea were systematically investigated. A high-resolution sedimentary record was established, which was coupled with the Yellow River diversion and runoff changes. The results show that the foraminiferal composition and foraminiferal abundance of the sediments from the north Yellow Sea had good response to the Yellow River diversion in 1855. Before the change, shallow water assemblages dominated the foraminifera, and the abundance of each foraminiferal species was very low. After the diversion event, the abundance of most foraminifera increased sharply, with a maximum increase of 16 times, and the assemblage was still dominated by shallow water species. Furthermore, the changes in foraminiferal abundance in the core sediments corresponded well with the discharge fluctuation of the Yellow River since 1855. When the Yellow River began entering the Bohai Sea, the Yellow River water, which is rich in nutrients, along with the coastal currents affected the north Yellow Sea, increased the primary productivity in the north Yellow Sea, which is the main reason for the abrupt increase and fluctuation of foraminiferal abundance in this area. At the meantime, the East Asian winter monsoon could also promote the development of nearshore foraminiferal species by enhancing the coastal currents.     

Pyrosequencing of nirS gene revealed spatial variation of denitrifying bacterial assemblages in response to wetland desertification at Tibet plateau

Amplicon sequencing of functional genes is a powerful technique to explore the diversity and abundance of microbes involved in biogeochemical processes. One such key process, denitrification, is of particular importance because it can transform nitrate(NO3-) to N2 gas that is released to the atmosphere. In nitrogen limited alpine wetlands, assessing bacterial denitrification under the stress of wetland desertification is fundamental to understand nutrients, especially nitrogen cycling in alpine wetlands, and thus imperative for the maintenance of healthy alpine wetland ecosystems. We applied amplicon sequencing of the nirS gene to analyze the response of denitrifying bacterial community to alpine wetland desertification in Zoige, China. Raw reads were processed for quality, translated with frameshift correction, and a total of 95,316 nirS gene sequences were used for rarefaction analysis, and 1011 OTUs were detected and used in downstream analysis. Compared to the pristine swamp soil, edaphic parameters including water content, organic carbon, total nitrogen, total phosphorous, available nitrogen, available phosphorous and potential denitrification rate were significantly decreased in the moderately degraded meadow soil and in severely degraded sandy soil. Diversity of the soil nirS-type denitrifying bacteria communities increased along the Zoige wetland desertification, and Proteobacteria and Chloroflexi were the dominant denitrifying bacterial species. Genus Cupriavidus(formerly Wautersia), Azoarcus, Azospira, Thiothrix, and Rhizobiales were significantly(P0.05) depleted along the wetland desertification succession. Soil available phosphorous was the key determinant of the composition of the nirS gene containing denitrifying bacterial communities. The proportion of depleted taxa increased along the desertification of the Zoige wetland, suggesting that wetland desertification created specific physicochemical conditions that decreased the microhabitats for bacterial denitrifiers and the denitrification related genetic diversity.     

侧孢短芽孢杆菌对铜绿微囊藻藻际微生物群落的影响

【目的】探究铜绿微囊藻(Microcystis aeruginosa)藻际微生物群落组成以及与溶藻细菌侧孢短芽孢杆菌(Brevibacillus laterosporus)Bl-zj共培养对藻际微生物群落的影响。【方法】将侧孢短芽孢杆菌Bl-zj与铜绿微囊藻共培养4 d后(BL组),收集样品,以单独培养的铜绿微囊藻(BG组)为对照,提取样品总基因组DNA后进行16S rDNA扩增、构建文库、测序及生物信息学分析,比较BL组与BG组间藻际微生物群落的差异。【结果】测序平均获得高质量序列85390条,946个OUT(Operational Taxonomic Unit),BL组特有OTU 339个。物种组成分析显示,BG组微生物群落主要以微囊藻属(Microcystis)为主,其余相对丰度由高到低分别为假单胞菌属(Pseudomonas)、中慢生根瘤菌属(Mesorhizobium)、短芽孢杆菌属(Brevibacillus)和红杆菌属(Rhodobacter)。BL组微生物群落主要以短芽孢杆菌属(Brevibacillus)为主。BL组的微生物多样性相较于BG组显著下降(P<0.05)。经预测,BG组微生物功能集中在能量代谢与外源生物降解与代谢,BL组微生物功能集中在碳水化合物代谢和氨基酸代谢功能。【结论】侧孢短芽孢杆菌Bl-zj与铜绿微囊藻共培养,打破了铜绿微囊藻藻际微生物群落的平衡,与Bl-zj的溶藻进程有关。     

Complementary DNA sequencing (cDNA): an effective approach for assessing the diversity and distribution of marine benthic ciliates along hydrographic gradients

The Yellow Sea Cold Water Mass(YSCWM) is a distinct hydrographic phenomenon of the Yellow Sea,and the distribution pattern of meio-and macrobentho s diffe rs inside and outside of the YSCWM.However,such a pattern has never been observed in the microbenthic ciliate communities.Therefore,we hypothesized that benthic ciliates followed a similar distribution pattern as meio-and macrobentho s,but this pattern has not been uncovered by morphological methods.We evaluated the diversity and distribution of benthic ciliates at five stations along hydrographic gradients across the YSCWM and adj acent shallow water by using morphology and DNA and complementary DNA(cDNA) high-throughput sequencing of the V4 region of 18 S rRNA gene.Results showed that the diversity of benthic ciliate s detected by DNA(303 OTU s),and the cDNA(611 OTUs) sequencing was much higher than that detected by the morphological method(79 species).Morphological method detected roughly different ciliate communities inside and outside of the YSCWM,but without statistical significance.No clear pattern was obtained by DNA sequencing.In contrast,cDNA sequencing revealed a distinct distribution pattern of benthic ciliate communities like meioand macrobenthos,which coincided well with the results of the environmental parameter analysis.More than half of the total sequences detected by DNA sequencing belonged to planktonic ciliates,most(if not all) of which were recovered from historic DNA originating through the sedimentation of pelagic forms because none of them were observed morphologically.The irrelevant historic DNA greatly influenced the recovery of rare species and thus limited the understanding of the benthic ciliate diversity and distribution.Our research indicates that the methods used have significant effects on the investigation of benthic ciliate communities and highlights that cDNA sequencing has great advantages in estimating the diversity and distribution of benthic ciliates,as well as the potential for benthic environmental assessments.     

Phase evolution of Holocene paleoenvironmental changes in the southern Yellow Sea: Benthic foraminiferal evidence from core C02

Assemblages of benthic foraminifera in a sediment core (C02) near the western margin of the southern Yellow Sea Mud were studied to decipher the phase evolution of Holocene paleoenvironmental changes associated with the Holocene marine transgression. It appears that during the early Holocene (11.2–10.1 kyr BP), the faunal was dominated by low salinity and shallow water species Cribrononion subincertum, Buccella frigida and Ammonia beccarii, reflecting a near coast depositional environment. A rapid increase of the relative abundance of Ammonia compressiuscula between 10.1–9.3 kyr BP indicates that the sea level rose rapidly during that time period. From 9.3–7.7 kyr BP, the benthic foraminiferal assemblage was dominated by high percentage of A. compressiscula, suggesting that the sea level was relatively stable. An obvious transition of benthic foraminifera, from the A. compressiuscula-dominated assemblage to an Ammonia ketienziensis-dominated assemblage, occurred between 7.7–6.2 kyr BP, possibly corresponding to a second sea level rapid rise period in the Yellow Sea during the Holocene. This transition may correspond to the gradually strengthened Yellow Sea warm current (YSWC) and finally is established the modern-type circulation in the Yellow Sea. It may also mark the formation of the Yellow Sea cold bottom water (YSCBW) during that period. Since then, the benthic foraminiferal assemblage based on core C02 was dominated by typical YSCBW species, A. ketienziensis, Astrononion italicum and Hanzawaia nipponica, at 6.2–4 kyr BP. A non-deposition period occurred since ～4 kyr BP, which possibly related to the hydrology changes caused by the East Asia monsoon. The two obvious benthic foraminiferal transitions recorded in core C02 during the early and middle Holocene provide evidence that the Yellow Sea has undergone a two-phase rapid sea level rise during the Holocene marine transgression.     

Enhancing the culturability of bacteria from the gastrointestinal tract of farmed adult turbot Scophthalmus maximus

Eighteen agar media were tested for the culture of gut-associated bacteria from farmed adult turbot(Scophthalmus maximus),including 16 agar media with or without 1% gastrointestinal(GI)supernatant,or with 2% or 4% GI supernatant.A total of 1 711 colonies were analyzed and 24 operational taxonomic units(OTUs)were identifi ed.The greatest bacterial diversity was isolated on Zobell 2216E/Zobell 2216E+ agar media,whereas MRS/MRS+ agar media produced a low diversity of colonies.Agar media with GI supernatant(1%,2%,or 4%)showed increased diversity and yielded different profi les of OTUs from the corresponding original media,suggesting that GI supernatant provides substances that enhance the culture effi ciency of bacteria from the turbot GI tract.The large majority of the colonies(82%)were γ-Proteobacteria,whereas 15.6% and 2.4% of colonies were Firmicutes and Actinobacteria,respectively.At the genus level,49.4% of all colonies were assigned to Vibrio.Other potential pathogens,including Pseudomonas,Photobacterium,and Enterobacter,and potential probiotics,including Bacillus,Paenibacillus,and Pseudomonas,were also isolated on agar media.Most cultured bacteria belonged to species that were fi rst described in the turbot GI tract.The impact of these species on turbot physiology and health should be investigated further.     

Comparison of fungal community composition within different intestinal segments of tilapia and bighead carp

Although intestinal fungi play important roles in host health and disease,the composition and diversity of fungal communities remain poorly reported in fish.In this study,fungi in the fore-,mid-,and hindintestine of tilapia(Oreochromis mossambicus) and bighead carp(Aristichthys nobilis) from Hongchaojiang Reservoir in Guangxi,China were investigated by ITS sequencing.Based on this,we obtained 1 763 478 high-quality tags,which clustered into 1 089 operational taxonomic units(OTUs).In total,404 OTUs were annotated,of which 310,68,and 26 belonged to Ascomycota,Basidiomycota,and other,respectively.Results show significant differences in the community composition of intestinal fungi between tilapia and bighead carp but not within their different intestinal segments.Furthermore,154 of the 404 annotated OTUs were considered reliable and were classified into three trophic modes and nine guilds.The three trophic modes consisted of 108 OTUs of saprotrophic fungi,41 OTUs of pathotrophic fungi,and five OTUs of symbiotrophic fungi.The top three most abundant OTUs overall(i.e.,Otu000002,Scopulariopsis acremonium; Otu000018,Alternaria palandui; Otu000034,Aureobasidium pullulans) showed lower abundance in the hind-intestinal segments of bighead carp,suggesting uneven distribution of these fungi in this species.In addition,saprotrophic and pathotrophic fungi were markedly decreased in the hindintestine.It is indicated that the fungal community was not only related to host species specificity but also to the respective physiological functions of different intestinal segments.These findings provide valuable information on the composition,structure,and potential function of the intestinal fungi community associated with different intestinal segments in tilapia and bighead carp under natural conditions,thus highlighting the importance of fungi as an integral part of the inte stinal microbiota in maintaining host health.     

Sedimentary facies of the subaqueous Changjiang River delta since the late Pleistocene

The sedimentary facies of the subaqueous Changjiang(Yangtze) River delta since the late Pleistocene was studied based on lithology and foraminifera analysis for two boreholes,CJK07 and CJK11,along with14C dating.Four sedimentary facies were identified,namely fluvial,tidal flat,offshore,and prodelta facies.The fluvial sedimentary facies is comprised of fluvial channel lag deposits,fluvial point bar deposits,and floodplain deposits,showing a fining-upward sequence in general with no benthic foraminifera.A layer of stiff clay overlies the fluvial deposits in core CJK07,indicating a long-term exposure environment during the Last Glacial Maximum(LGM).During the postglacial sea-level rise around 13-7.5 cal ka BP,the tidal flat facies was deposited in core CJK11,characterized by abundant silt-clay couplets.Euryhaline species dominate the subtidal flat foraminiferal assemblages,while almost no foraminifera was found in the intertidal flat.The offshore environment was the major sedimentary environment when the sea level reached its highest level around 7.5 cal ka BP,with a maximum accumulation rate of 10 mm/a found in core CJK11.Prodelta sediments have been deposited in core CJK11 since ~3 cal ka BP,after the formation of the Changjiang River delta.The difference in sedimentary facies between core CJK07 and CJK11 is due to their location: core CJK07 was in an interfluve while core CJK11 was in an incised valley during the LGM.Furthermore,AMS14C dating of core CJK07 shows poor chronological order,indicating that the sediments were reworked by strong tidal currents and that sediment deposited since ~7.7 cal ka BP in core CJK07 was eroded away by modern hydrodynamic forces caused by the southward shift of the Changjiang River delta depocenter.     

Paleo-fluvial sedimentation on the outer shelf of the East China Sea during the last glacial maximum

Evidence from lithology, foraminiferal assemblages, and high-resolution X-ray fluorescence scanning data of core SFK-1 indicates tidally influenced paleo-fluvial sedimentation during the last glacial maximum (LGM) on the outer shelf of the East China Sea. The paleo-fluvial deposits consist of river channel facies and estuarine incised-valley-filling facies. Different reflections on the seismic profile across core SFK-1 suggest that the river channels shifted and overlapped. River channel deposition formed early in the LGM when sea level fell and the estuary extended to the outer shelf. Channel sediments are yellowish-brown in color and rich in foraminifera and shell fragments owing to the strong tidal influence. Following the LGM, the paleo-river mouth retreated and regressive deposition of estuarine and incised-valley-filling facies with an erosion base occurred. The river channel facies and estuarine incised-valley-filling facies have clearly different sedimentary characteristics and provenances. The depositional environment of the paleoriver system on the wide shelf was reconstructed from the foraminiferal assemblages, CaCO₃ content and Ca/Ti ratio. The main results of this study provide further substantial constraints on the recognition of late Quaternary stratigraphy and land-sea interactions on the ECS shelf.     

Diversity and community structure of eukaryotic microalgae in surface sediments in the central Bohai Sea,China, based on a metabarcoding approach

Sediment samples were collected at 17 stations in the central Bohai Sea, China, and the diversity and community structure of eukaryotic microalgae were assessed by metabarcoding the V4 region of 18S rDNA. A total of 930 operational taxonomic units (OTUs) were detected for microeukaryotes, including 98 algal OTUs. The algal communities comprised 42 genera belonging to 19 classes of six phyla, and they were dominated by chrysophytes and dinoflagellates. Dinoflagellates were also the most diverse microalgal group. The nano-sized dinoflagellates Biecheleria halophila and Azadinium trinitatum occurred abundantly in the study area; however, they have not been reported previously, as they may be overlooked or misidentified in light microscopy. Many pico-sized chlorophytes were detected in the sediment samples. Sixteen of the detected OTUs were assigned to potentially harmful and/or bloom-forming microalgae, suggesting some potential risks of harmful algal blooms in the central Bohai Sea. The capacity of metabarcoding to detect morphologically cryptic and small species makes this method a sufficiently sensitive means of detection for assessing eukaryotic microalgae in sediments.

     

Molecular analyses of bacterioplankton communities with highly abundant Vibrio clades: a case study in Bohai Sea coastal waters

We investigated the bacterioplankton abundance,community composition and the associated Vibrio clades of natural seawater in Bohai Sea coastal waters.Seawater samples(10 L in triplicate)were collected at 0.5,3,and 5 m depths near the coastal aquaculture zone of the Bohai Sea on May 12,2016.Real-time PCR and 16 S rRNA gene amplicon high-throughput sequencing methods were employed by which 485 operational taxonomic units(OTUs)at a 97% sequence similarity level were generated.Gammaproteobacteria,Alphaproteobacteria,and Bacteroidetes were the most abundant groups,accounting for 49.5%,23.5%,and 18.9% ofthe total assemblage,respectively.Obvious variations in Pseudoalteromonas,Vibrio,and Octadecabacter,which were the most abundant genera,could be observed among different samples.Notably,the results of Vibrio-specific real-time PCR indicated that Vibrio had extremely high 16 S rRNA gene copy numbers.The 16 S rRNA gene sequencing results across all the samples also indicated that they occupied a large proportion of the total assemblage.Both the alpha diversity and major bacterioplankton group Pseudoalteromonas had significant correlations with the concentration of PO43-.Overall,studies on bacterioplankton communities with highly abundant Vibrio clades can provide interesting insight into the microbial function and health assessment of the Bohai Sea coastal ecosystem.     

Impact of redox-stratification on the diversity and distribution of bacterial communities in sandy reef sediments in a microcosm

Relationships between microbial communities and geochemical environments are important in marine microbial ecology and biogeochemistry. Although biogeochemical redox stratification has been well documented in marine sediments, its impact on microbial communities remains largely unknown. In this study, we applied denaturing gradient gel electrophoresis (DGGE) and clone library construction to investigate the diversity and stratification of bacterial communities in redox-stratified sandy reef sediments in a microcosm. A total of 88 Operational Taxonomic Units (OTU) were identified from 16S rRNA clone libraries constructed from sandy reef sediments in a laboratory microcosm. They were members of nine phyla and three candidate divisions, including Proteobacteria (Alpha-, Beta-, Gamma-, Delta-, and Epsilonproteobacteria), Actinobacteria, Acidobacteria, Bacteroidetes, Chloroflexi, Cyanobacteria, Firmicutes, Verrucomicrobia, Spirochaetes, and the candidate divisions WS3, SO31 and AO19. The vast majority of these phylotypes are related to clone sequences from other marine sediments, but OTUs of Epsilonproteobacteria and WS3 are reported for the first time from permeable marine sediments. Several other OTUs are potential new bacterial phylotypes because of their low similarity with reference sequences. Results from the 16S rRNA, gene clone sequence analyses suggested that bacterial communities exhibit clear stratification across large redox gradients in these sediments, with the highest diversity found in the anoxic layer (15–25 mm) and the least diversity in the suboxic layer (3–5 mm). Analysis of the nosZ, and amoA gene libraries also indicated the stratification of denitrifiers and nitrifiers, with their highest diversity being in the anoxic and oxic sediment layers, respectively. These results indicated that redox-stratification can affect the distribution of bacterial communities in sandy reef sediments.     

Phylogenetic diversity and bioactivity of culturable deep-sea-derived fungi from Okinawa Trough

Deep-sea sediments are now recognized as a home for rich and largely microbial community. Recently, it has been believed in an increasing number of studies that bacteria could be abundant in deepsea sediments of many types; however, fungi in deep-sea sediments remain relatively unknown. The phylogenetic diversity and bioactivity of culturable deep-sea-derived fungi from Okinawa Trough sediments were investigated in traditional method combined with fungal identification of molecular biology in this study. A total of 76 isolates belonged to 15 fungal taxa were recovered in a harsh condition of low nutrient and low temperature, indicating that the fungal communities in deep-sea sediments from Okinawa Trough were relatively abundant and diversified. Aspergillus, Cladosporium, and Penicillium were the dominant fungal genera, while Mycosphaerella, Purpureocillium, and Schizophyllum were relatively rare in the deep-sea sediments from Okinawa Trough. Among the six genera recovered, Mycosphaerella was firstly recovered from deep-sea sediments in this study. Moreover, about 75% of the extracts from the 15 fungal representative isolates displayed distinct bioactivity against at least one indicator bacterium or marine macrofouler, emphasizing the potentials of these deep-sea-derived fungi from Okinawa Trough as producers of bioactive metabolites. Notably, isolates Cladosporium oxysporum SCSIO z001 and Penicillium citrinum SCSIO z049 displayed a wide spectrum of bioactivities, isolates Cladosporium cladosporioides SCSIO z015, Cladosporium sphaerospermum SCSIO z030, and Penicillium verruculosum SCSIO z007 exhibited a strong anti-bacterial-growth activity, and isolate Penicillium chrysogenum SCSIO z062 displayed a strong anti-larval-settlement activity. These results suggest that these isolates deserved further study as potential sources of novel bioactive metabolites.     

Analysis of DNA Methylation of <Emphasis Type="Italic">Gracilariopsis lemaneiformis</Emphasis> Under Temperature Stress Using the Methylation Sensitive Amplification Polymorphism (MSAP) Technique

Gracilariopsis lemaneiformis is an economically important agarophyte, which contains high quality gel and shows a high growth rate. Wild population of G. lemaneiformis displayed resident divergence, though with a low genetic diversity as was revealed by amplified fragment length polymorphism (AFLP) and simple sequence repeat (SSR) analyses. In addition, different strains of G. lemaneiformis are diverse in morphology. The highly inconsistence between genetic background and physiological characteristics recommends strongly to the regulation at epigenetic level. In this study, the DNA methylation change in G. lemaneiformis among different generation branches and under different temperature stresses was assessed using methylation sensitive amplified polymorphism (MSAP) technique. It was shown that DNA methylation level among different generation branches was diverse. The full and total methylated DNA level was the lowest in the second generation branch and the highest in the third generation. The total methylation level was 61.11%, 60.88% and 64.12% at 15°C, 22°C and 26°C, respectively. Compared with the control group (22°C), the fully methylated and totally methylated ratios were increased in both experiment groups (15°C and 26°C). All of the cytosine methylation/demethylation transform (CMDT) was further analyzed. High temperature treatment could induce more CMDT than low temperature treatment did.