Distribution and characterization of luminescent bacteria in a temperate estuary

The effect of temperature and salinity on numbers of luminescent bacteria present in waters of the Mystic (Conn.) River estuary was evaluated. Counts decreased with decreasing salinity; none were detected at freshwater stations. A population maximum of 35 per ml was noted at the highest salinity station (30±2‰). Highest counts were observed during winter and spring and lowest numbers occurred during summer and fall months. Isolates (111) were identified and compared with previously-described luminescent bacteria; i.e.,Beneckea (Vibrio) harveyi, Photobacterium (V.) fischeri, P. phosphoreum, andP. leiognathi. All species were isolated but distinct seasonal differences were noted.P. (V.) fischeri andB. (V.) harveyi represented 93% of the luminous population on an annual basis. Only the former was found during the period December through March (highest count 7 per ml) whileB. (V.) harveyi was the dominant species noted between May and October (maximum count 11 per ml).P. leiognathi andP. phosphoreum were found only during July and August as 7% of the total luminous population. All isolates grew at NaCl concentrations between 6 and 30‰; none grew below 6‰     

Quantification of Vibrio vulnificus in an Estuarine Environment: a Multi-Year Analysis Using QPCR

Using a refined quantitative polymerase chain reaction assay, we compared surface and bottom water concentrations of Vibrio vulnificus with total Vibrio spp. concentrations, fecal indicator bacteria (Escherichia coli and Enterococcus sp.), and environmental parameters (salinity, temperature, chlorophyll a, and turbidity) over 4 years at a mesohaline site in the Neuse River Estuary in North Carolina. V. vulnificus was not detected when water temperature was below 20 °C and 93 % of positive samples were from salinities 10–20 psu. V. vulnificus was detected in 50 % of summer samples with peak concentrations in summer bottom waters. Significant positive correlations for V. vulnificus and temperature, salinity, and bacterial group abundance were found. Significant negative correlations with chlorophyll a were also observed. Interannual comparisons indicated a significant decrease in mean V. vulnificus since 2005, corresponding with increasing salinity due to severe drought conditions in 2007 and 2008. Total Vibrio spp. abundance also decreased in 2007 but returned to the previously observed abundance by 2008. Although a significant positive relationship between total Vibrio spp. and V. vulnificus was documented, interannual comparisons indicate that total Vibrio spp. densities may not be indicative of V. vulnificus in all environmental conditions and that long-term drought conditions may alter community composition.     

Precipitation of iron in microbial mats of the spring waters of Borra Caves,Vishakapatnam, India: some geomicrobiological aspects

The Borra caves, Vishakapatnam, India, can be described as a speleothem cave with significant amounts of unexplored microbial mats in spring waters. Here, we present the first observations and hypotheses on the possible impact of the microorganisms in these mats on the cave formation, focusing on their role on iron mineral precipitation. The spring waters (pH neutral 7.5–7.7) contained dissolved metals like iron and the organic mat sludge (pH 7.0–7.3) had a TOC content of approximately 5.4 wt%. Geochemically, the spring waters deep below the microbial mats contained Fe 369 ppb, Sr 198 ppb; and the organic mat sludge contained Mg 9 ppm, Fe 427 ppb, Zn 149 ppb, Sr 190 ppb. XRD observations displayed Fe minerals (dominantly hematite), minor amounts of zinc gallium sulfide and nitrofuryl compounds. At least four groups of bacteria identified by direct microscopy and SEM-EDX on the basis of morphology could be observed in all samples: Leptothrix-like organisms, entombed bacterial mineral sheaths, a few stalks of Gallionella-like organisms and some additional bacteria that could not be further identified. Leptothrix-like organisms contained 43.22–60.08 wt % Fe and the mineral precipitated near and around these bacteria (in the actual unaltered samples on site) contained 30.76–45.22 wt% Fe as identified and quantified by SEM-EDX. This study indicates that the precipitation of these iron-rich mats in the spring waters could be linked to the presence of abundant active communities of iron precipitating bacteria at Borra caves, Vishakapatanam.     

Rare earth elements,neodymium and strontium isotopic systematics in mineral waters: evidence from the Massif Central,France

Rare Earth Elements (REEs), and Sr and Nd isotope distributions, have been studied in mineralized waters from the Massif Central (France). The CO₂-rich springs are characterized by a neutral pH (6–7) associated with total dissolved solids (TDS) from 1 to 7 g l⁻¹. The waters result from the mixing of very mineralized water pools, thought to have equilibrated at a temperature of around 200°C with superficial waters. These two mineral water pools evidenced by Sr isotopes and dissolved REEs could reflect 2 different stages of water–rock interaction and an equilibrium with different mineral assemblages.The concentrations of individual dissolved REEs and total dissolved REEs (ΣREE), in the mineral waters examined, vary over several orders of magnitude but are not dependent on the main parameters of the waters (TDS, T°C, pH, Total Organic C). The dissolved REE concentrations presented as upper continental crust normalized patterns show HREE enrichment in most of the samples. The time evolution of REE patterns does not show significant fluctuations except in 1 borehole, located in the Limagne d’Allier area, which was sampled on 16 occasions over an 18 month period. Ten samples are HREE-enriched, whereas 6 samples show flat patterns.The aqueous speciation of REEs shows that CO²⁻₃ complexes dominate (>80%) over the free metal, F⁻, SO²⁻₄ and HCO⁻₃ complexes. The detailed speciation demonstrates that the fractionation of REEs (i.e. the HREE enrichment) in CO₂-rich and pH neutral fluids is due essentially to the predominance of the CO²⁻₃ complexes.The Sr isotopic composition of the mineral waters in the Massif Central shows different mixing processes; in the Cézallier area at least 3 end-member water types exist. The most dilute end-member is likely to originate as poorly mineralized waters with minimal groundwater circulation. Two other mineralized end-members are identified, although the link between the geographical location of spring outflow and the mixing proportion between the 2 end-members is not systematic. The range in ϵ_Nd(0) for mineralized waters in the Massif Central correlates well with that of the known parent rocks except for 4 springs. One way to explain the ϵ_Nd(0) in these instances is a contribution from drainage of volcanic rocks. The isotopic systematics help to constrain the hydrogeological models for this area.     

The ichthyofauna of the sundays estuary,South Africa,with particular reference to the juvenile marine component

The ichthyofauna of the Sundays Estuary was investigated by monthly seine netting over a period of a year. Forty-seven species were captured though 23 of these were represented by a total catch of less than 25 specimens each. The small clupeidGilchristella aestuarius was numerically dominant and constituted 80%, of the catch. The study confirms that in addition to this species, two species of goby,Caffrogobius multifasciatus andPsammogobius knysnaensis and the soleSolea bleekeri complete their life cycles in the estuary. Many other species such as mullet, utilize the estuary as a juvenile nursery area. First year juveniles ofRhabdosargus holubi, Lithognathus lithognathus, Pomadasys commersonni andMonodactylus falciformis, by virtue of their abundance in the Sundays Estuary and other South African estuaries, and their absence from other coastal environments, appear to be dependent on estuaries as juvenile nursery areas.     

Contrasting Bacterial Dynamics in Subtropical Estuarine and Coastal Waters

Seasonal succession and composition of both attached and free-living bacterial communities were studied in subtropical estuarine and coastal waters with contrasting hydrographic conditions. A higher abundance of attached bacteria was recovered in the estuarine waters containing high concentrations of dissolved organic carbon (DOC) resulting from the freshwater discharge in the adjacent Pearl River, and Proteobacteria, including ??-, ??-, and ??-groups, predominated the attached community at both stations. Free-living bacterial communities at both stations showed higher diversity and lower seasonality than their attached counterparts, and ??-Proteobacteria accounted for the highest proportion at both stations. Redundancy analysis (RDA) demonstrated that, in addition to the obvious temperature effects, DOC and microphytoplankton (>20???m Chl a) drive the temporal variation of attached bacteria at the estuarine and coastal stations, respectively. On the other hand, picophytoplankton (<2???m Chl a) and dissolved oxygen concentration explained most of the free-living bacterial community succession at the estuarine station, while those at the coastal station were associated with micro- and picoplankton (Chl a fractions of <2 and >20???m). These findings suggest that temperature and bottom?Cup effects play a more important role for the spatial?Ctemporal variations of both attached and free-living bacterial communities in the subtropical estuarine and coastal waters.     

Microbial carbon cycling in oligotrophic regional aquifers near the Tono Uranium Mine, Japan as inferred from δC and ΔC values of in situ phospholipid fatty acids and carbon sources

Microorganisms are ubiquitous in deep subsurface environments, but their role in the global carbon cycle is not well-understood. The natural abundance δ¹³C and Δ¹⁴C values of microbial membrane phospholipid fatty acids (PLFAs) were measured and used to assess the carbon sources of bacteria in sedimentary and granitic groundwaters sampled from three boreholes in the vicinity of the Tono Uranium Mine, Gifu, Japan. Sample storage experiments were performed and drill waters analyzed to characterize potential sources of microbial contamination. The most abundant PLFA structures in all waters sampled were 16:0, 16:1ω7c, cy17:0, and 18:1ω7c. A PLFA biomarker for type II methanotrophs, 18:1ω8c, comprised 3% and 18% of total PLFAs in anoxic sedimentary and granitic waters, respectively, sampled from the KNA-6 borehole. The presence of this biomarker was unexpected given that type II methanotrophs are considered obligate aerobes. However, a bacterium that grows aerobically with CH₄ as the sole energy source and which also produces 56% of its total PLFAs as 18:1ω8c was isolated from both waters, providing additional evidence for the presence of type II methanotrophs. The Δ¹⁴C values determined for type II methanotroph PLFAs in the sedimentary (−861‰) and granite (−867‰) waters were very similar to the Δ¹⁴C values of dissolved inorganic carbon (DIC) in each water (∼−850‰). This suggests that type II methanotrophs ultimately derive all their carbon from inorganic sources, whether directly from DIC and/or from CH₄ produced by the reduction of DIC. In contrast, δ¹³C values of type II PLFAs in the sedimentary (−93‰) and granite (−60‰) waters indicate that these organisms use different carbon assimilation schemes in each environment despite very similar δ¹³C_CH4 values (∼−95‰) for each water. The δ¹³C_PLFA values (−28‰ to −45‰) of non-methanotrophic bacteria in the KNA-6 LTL water do not clearly distinguish between heterotrophic and autotrophic metabolisms, but Δ¹⁴C_PLFA values indicate that >65% of total bacteria filtered from the KNA-6 LTL water are heterotrophs. Ancient Δ¹⁴C values (∼−1000‰) of some PLFAs suggest that many heterotrophs utilize ancient organic matter, perhaps from lignite seams within the sedimentary rocks. The more negative range of δ¹³C_PLFA values determined for the KNA-6 granitic water (−42‰ to −66‰) are likely the result of a microbial ecosystem dominated by chemolithoautotrophy, perhaps fuelled by abiogenic H₂. Results of sample storage experiments showed substantial shifts in microbial community composition and δ¹³C_PLFA values (as much as 5‰) during 2-4 days of dark, refrigerated, aseptic storage. However, water samples collected and immediately filtered back in the lab from freshly drilled MSB-2 borehole appeared to maintain the same relative relationships between δ¹³C_PLFA values for sedimentary and granitic host rocks as observed for samples directly filtered under artesian flow from the KNA-6 borehole of the Tono Uranium Mine.     

Distribution of dissolved volatile fatty acids in some Louisiana oil field brines

Interest in the distribution of dissolved volatile fatty acids, VFAs, in subsurface brines has been stimulated by the role these substances may play as proximity indicators to hydrocarbons, as potential precursors of some natural gas, as aqueous complexing agents, and as diagenetically-reactive acids. We have studied the distribution of individual VFA species in subsurface brines from three oil fields in the hydropressured portion of the Tertiary section of South Louisiana. Total VFA concentrations vary from 2 to 166 mg/l over a sampled depth range of from 660 to 2900 m and a temperature range of from 40 to 90°C. The VFAs in part have apparently been generated at greater depth and transported upward where they have undergone progressive degradation. In some areas, acetate appears to have been preferentially degraded over propionate, and propionate preferentially degraded overiso- andn-butyrate andiso- andn-valerate. VFAs contribute from 5 to 35% of the total titration alkalinity of most of the waters analyzed.The spatial distribution of individual dissolved VFA species at each of the three fields studied is unique, complex, but internally systematic, and must ultimately be controlled by local variations in the rates of production, degradation, and transport of these compounds. The VFAs thus have the potential for helping to delineate the dynamics of on-going subsurface mass transport. As such, further understanding of controls on their distribution will aid in the exploration for hydrocarbons.     

Chlorine stable isotope distribution of Michigan Basin formation waters

The Cl isotope ratio, mass³⁷Cl/³⁵Cl, was measured on 22 formation waters from Mississippian, Devonian, Silurian, Ordovician and Cambrian strata in the Michigan Basin. Because of its resistance to fractionation, the ratio was used to find evidence of mixing of formation waters within the Michigan Basin and between the Canadian Shield and the basin. The δ³⁷Cl composition of waters decreased from +0.05 to −0.55 (per mil difference from SMOC, precision of 0.16) with age of the strata among Devonian, Silurian, Ordovician and Cambrian samples from the basin margin. Mississippian samples from the middle of the basin were isotopically heaviest at +0.1. Ordovician samples, also from mid-basin, were isotopically lightest at −1.2. On plots of δ³⁷ Cl vs Cl/Br and δ³⁷ Cl vs⁸⁷Sr/⁸⁶Sr samples at the basin margin trend toward enrichment in³⁵Cl and⁸⁷Sr and increasing Cl/Br suggesting interformational mixing of the waters. On a δ³⁷ ClCl/Br plot, three samples not on this trend and tending toward high Cl/Br may reflect evaporite dissolution. Canadian Shield Waters were plotted with Michigan Basin waters on the graphs of δ³⁷ Cl vs Ca/Cl and δ³⁷ Cl vs K/Cl. On both plots data fall along linear trends of³⁵Cl depletion with Ca/Cl increase and with K/Cl decrease. Ordovician waters from the middle of the basin and shield waters are end members on the plots. The results suggest that despite water-rock interactions, δ³⁷ Cl data may be useful in studies of mixing relations in formation waters.     

Antibiotic resistance and genetic diversity in water-borne Enterobacteriaceae isolates from recreational and drinking water sources

A total of 240 water-borne bacteria including 72 Escherichia coli, 83 Enterobacter, 30 Klebsiella, 36 Salmonella and 19 Shigella spp. isolates from drinking and recreational water sources were assessed for antibiotic resistance and genetic diversity. Escherichia coli (88.89 %) and species of Enterobacter (86.75 %), Klebsiella (83.33 %) and Salmonella (100 %) were resistant to cefadroxil, while >94 % Shigella spp. were resistant to cefaclor and cefuroxime. Ofloxacin was the most effective antibiotic against isolates of all the genera. Multiple antibiotic resistance index identified dug well, pond and piped water supplies as high risk sources of enteric pathogens. Random amplified polymorphic DNA analysis and restriction fragment length polymorphism of amplified 16S rRNA gene were studied for genetic relatedness of Enterobacteriaceae isolates. Primer P1254 identified 10, 16, 4, 4 and 1 distinct random amplified polymorphic DNA group(s) of E. coli, Enterobacter, Klebsiella, Salmonella and Shigella species, respectively. Unlike random amplified polymorphic DNA, restriction fragment length polymorphism using AluI and HaeIII could not segregate isolates in different genetic profiles. 16S rRNA gene of three Enterobacter spp. strains from different sources with similar restriction fragment length polymorphism but different random amplified polymorphic DNA patterns was sequenced, and identified as Enterobacter hormaechei strains skg0061, 0062 and 0063. The sequence information has been submitted to GenBank (HQ322393-95). Biochemically similar but genetically diverse Enterobacteriaceae members from drinking and recreational water sources exhibited varying antibiotic sensitivity. Contamination of water sources with such multiple antibiotic-resistant enteric pathogens poses threat to human health.     

The source of radium in anomalous accumulations near sandstone escarpments,Australia

The source of Ra has been determined in water samples from four areas in Australia where anomalously high surface concentrations of²²⁶Ra have accumulated from groundwaters. All four anomalies were located adjacent to sandstone formations, and the groundwaters, which were generally all acidic and low in dissolved salts, appeared to be meteoric water with short ground-residence times. Uranium,²²⁶Ra and²²⁸Ra concentrations of waters feeding the anomalous areas were comparable to those found in standing waters within the sandstones. The²²⁶Ra/²²⁸Ra isotopic ratios were distributed about a median of 1.1 which suggests that the waters are in contact with rocks with near-normal U/Th ratios and, hence, that the Ra in the anomalies was derived from within the sandstones.The presence of the short-lived Ra isotopes,²²³Ra and²²⁴Ra, in high concentrations in most spring waters feeding these anomalies suggests that Ra enters groundwaters by recoil following alpha decay of a precursor parent radionuclide within mineral grains. Thus, although three of the areas were considered prospective for U, the radioactive anomalies studied appear to be due to natural transfer of Ra from the sandstones to the surface environment. In no case were the anomalies related to nearby known or undiscovered U deposits. Accordingly, a geochemical procedure, which includes Ra isotopic measurements, is recommended for evaluating radioactive anomalies for U exploration. This procedure should enable selection of only those anomalies with the highest potential for further exploration by more expensive techniques.     

Nutrients limiting the algal growth potential (AGP) in the Po River plume and an adjacent area, Northwest Adriatic Sea: Enrichment bioassays with the test algaeNitzschia closterium andThalassiosira pseudonana

From April 1993 to March 1994, 135 samples were collected at two sites in the coastal Adriatic Sea, both near (14.5 km) and far (63 km) from the Po River delta. The nutrient(s) limiting algal growth potential (AGP) were estimated by bioassay usingNitzshia closterium (local isolate) andThalassiosira pseudonama (strain 3-H). Estimates were also made by comparing the nutrient molar ratios, ΣN:P and ΣN:Si (whereΣN=NO₃ ^?+NO₂ ^?+NH₄ ⁺+urea), to the Redfield Ratio (16∶1, 1∶1). According to the bioassay results, phosphorus was the sole nutrient limiting AGP in 2% of the samples and was the most limiting nutrient in 69% of the samples; nitrogen was sole limiting nutrient in 18% of the samples. In 11% of samples, nitrogen and phosphorus were equally co-limiting. Omission of phosphorus from spike enrichments allowed, on average, only a 1.6-fold increase in biomass over that in the unenriched controls. Similar omission of nitrogen allowed a 4-fold increase, while silicon, iron, and micronutrients resulted in 14-fold, 18-fold, and >20-fold increases, respectively. In most of the samples, ΣN:P was much greater than 16, indicating a marked phosphorus deficiency, while ΣN:Si values suggested that silicon was the third most limiting nutrient in 35% of samples. In water collected for from the Po delta, the yield ofN. closterium was not limited by any nutrients other than the three major ones: P, N and Si. In these same waters,T. pseudonana was also potentially limited by iron and, to a lesser extent, by vitamins. The role of iron varied. In samples collected near the Po delta, iron acted as the third most limiting nutrient forN. closterium in June and September; it appeared 29 times out of 78 on the list of potentially limiting nutrients forT. pseudonana, including 5 times as the most limiting. Altogether, comparison with published results suggests that the roles of iron and silicon in AGP limitation have increased during the past three decades, and could become even more important if eutrophication in the Adriatic Sea continues to increase.     

Seasonal abundance and vertical distribution of crab larvae in Delaware Bay

Larvae of 15 species or genera of crabs were collected and identified during a six month (May 26 to October 28, 1978) study in the mouth of Delaware Bay. Seasonal abundance and vertical distribution of each species were investigated. Most species studied had peak abundance in July and August except forCancer irroratus andOvalipes ocellatus which showed peak occurrence in May and June, respectively. Larvae of species strongly dependent on estuarine habitats, such asUca spp.,Pinnixa chaetopterana, andP. sayana, showed a tendency to congregate in near-bottom waters where net flow of water is landward, thus favoring retention within the estuary. Larvae ofOvalipes ocellatus, Cancer irroratus, andCallinectes sapidus were more common at the surface. This vertical distribution suggests that these larvae are flushed out of the estuary. The mechanisms of recruitment and replenishment of adult populations within the estuary would therefore depend on migration of megalopa and juveniles. *** DIRECT SUPPORT *** A01BY019 00006     

Water toxicity and metal contamination assessment of a polluted river: the Upper Vistula River (Poland)

In aquatic systems, the bioavailability of an element to microorganisms is greatly influenced by its chemical speciation. The goal of this work was to assess metal toxicity to a green algae (Pseudokirchneriella subcapitata) and a bacterium (Vibrio fisheri) as a function of size fractionation and chemical speciation (using the program MINTEQA2) in contaminated water of the Upper Vistula River. Water samples were collected at 1 reference site, 4 polluted sites and one polluted site on the Vistula's main tributary, the Przemsza River. Toxicity measurements were performed on unfiltered samples and, total dissolved (<1.2 μm), and truly dissolved (<1 kDa) fractions. Trace metal (Cd, Co, Cr, Cu, Mn, Pb, Zn) concentrations were measured in these samples and also in the colloidal fraction (1 kDa–1.2 μm). At the reference site, the low metal concentrations were in agreement with the absence of measurable toxicity. In the polluted section of the river, free metal concentrations were largely below the potential toxic levels for bacteria, which was in agreement with the absence of toxicity. Although Zn²⁺ was at potentially toxic-level concentrations in total dissolved and truly dissolved fractions in the polluted riverine section, toxicity for algae was observed, only in truly dissolved fractions from two stations. The absence of toxicity in most samples was related to metal association with particles and with low molecular weight ligands as well as the presence of organic ligands (phenol). The reason for toxic effects in two ultrafiltered samples is not clear, but may be related to the elimination of the colloidal organic fraction and thus the eradication of its protective effect occurring in natural samples.     

Br/Cl ratios and O, H, C, and B isotopic constraints on the origin of saline waters from eastern Canada

Saline groundwaters were recovered from undisturbed (Restigouche deposit) and active (Brunswick #12 mine) Zn-Pb volcanogenic massive sulfide deposits in the Bathurst Mining Camp (BMC), northern New Brunswick, Canada. These groundwaters, along with fresh to brackish meteoric ground and surface waters from the BMC, have been analyzed to determine their major, trace element and stable isotopic (O, H, C, and B) compositions. Saline groundwaters (total dissolved solids = 22-45 g/L) are characterized by relatively high Na/Ca ratios compared to brines from the Canadian Shield and low Na/Cl_molar and δ¹¹B isotopic compositions (−2.5‰ to 11.1‰) compared to seawater. Although saline waters from the Canadian Shield commonly have oxygen and hydrogen isotopic compositions that plot to the left of the global meteoric water line, those from the BMC fall close to the water line. Fracture and vein carbonate minerals at the Restigouche deposit have restricted carbon isotopic compositions of around −5‰ to −6‰. The carbon isotopic compositions of the saline waters at the Restigouche deposit (+12‰ δ¹³C_DIC) are the result of fractionation of dissolved inorganic carbon by methanogenesis. We suggest that, unlike previous models for shield brines, the composition of saline waters in the BMC is best explained by prolonged water-rock reaction, with no requirement of precursor seawater. We suggest that elevated Br/Cl ratios of saline waters compared to seawater may be explained by differential uptake of Br and Cl during groundwater evolution through water-rock reaction.     

Amino acid composition of suspended particles,sediment-trap material,and benthic sediment in the Potomac Estuary

Sediment trap deployments in estuaries provide a method for estimating the amount of organic material transported to the sediments from the euphotic zone. The amino acid composition of suspended particles, benthic sediment, and sediment-trap material collected at 2.4 m, 5.8 m, and 7.9 m depths in the Potomac Estuary was determined in stratified summer waters, and in well-mixed oxygenated waters (DO) in late fall. The total vertical flow, or flux, of material into the top traps ranged from 3 g m^?2 d^?1 in August to 4.9 g m^?2 d^?1 in October. The carbon and nitrogen fluxes increased in the deepest traps relative to the surface traps during both sampling periods, along with that of the total material flux (up to 47.3 g m^?2 d^?1 in the deepest trap), although the actual weight percent of organic carbon and organic nitrogen decreased with depth. Amino acid concentrations ranged from 129 mg g^?1 in surface water particulate material to 22 mg g^?1 in particulate material in 9-m-deep waters and in the benthic sediment. Amino acid concentrations from 2.4-mg-depth sediment traps averaged 104±29 mg g^?1 in stratified waters and 164±81 mg g^?1 in well-mixed waters. The deep trap samples averaed, 77.3±4.8 mg g^?1 amino acids in summer waters and 37±16 mg g^?1 in oxygenated fall waters. Amino acids comprised 13% to 39% of the organic carbon and 12% to 89% of the orgnaic nitrogen in these samples. Analysis of the flux results suggest that resuspension combined with lateral advection from adjacent slopes can account for up to 27% of the material in the deep traps when the estuary was well-mixed and unstratified. When the estuary was stratified in late summer, the amino acid carbon produced by primary productivity in the euphotic zone decreased by 85% (86% for total organic carbon) at the pycnocline at 6 m depth, leaving up to 15% of the vertical organic flux available for benthic sediment deposition.     

Regulation of bacterial sulfate reduction and hydrogen sulfide fluxes in the central namibian coastal upwelling zone

The coastal upwelling system off central Namibia is one of the most productive regions of the oceans and is characterized by frequently occurring shelf anoxia with severe effects for the benthic life and fisheries. We present data on water column dissolved oxygen, sulfide, nitrate and nitrite, pore water profiles for dissolved sulfide and sulfate,³⁵S-sulfate reduction rates, as well as bacterial counts of large sulfur bacteria from 20 stations across the continental shelf and slope. The stations covered two transects and included the inner shelf with its anoxic and extremely oxygen-depleted bottom waters, the oxygen minimum zone on the continental slope, and the lower continental slope below the oxygen minimum zone. High concentrations of dissolved sulfide, up to 22 mM, in the near-surface sediments of the inner shelf result from extremely high rates of bacterial sulfate reduction and the low capacity to oxidize and trap sulfide. The inner shelf break marks the seaward border of sulfidic bottom waters, and separates two different regimes of bacterial sulfate reduction. In the sulfidic bottom waters on the shelf, up to 55% of sulfide oxidation is mediated by the large nitrate-storing sulfur bacteria, Thiomargarita spp. The filamentous relatives Beggiatoa spp. occupy low-O₂ bottom waters on the outer shelf. Sulfide oxidation on the slope is apparently not mediated by the large sulfur bacteria. The data demonstrate the importance of large sulfur bacteria, which live close to the sediment-water interface and reduce the hydrogen sulfide flux to the water column. Modeling of pore water sulfide concentration profiles indicates that sulfide produced by bacterial sulfate reduction in the uppermost 16 cm of sediment is sufficient to account for the total flux of hydrogen sulfide to the water column. However, the total pool of hydrogen sulfide in the water column is too large to be explained by steady state diffusion across the sediment-water interface. Episodic advection of hydrogen sulfide, possibly triggered by methane eruptions, may contribute to hydrogen sulfide in the water column.     

Characterization, classification, and determination of drinkability of some Algerian thermal waters

In this study, the physicochemical parameters (Conductivity, pH, Cl^?, HCO ₃ ^? , PO ₄ ^3? , SO ₄ ^2? , NO ₃ ^? , NO ₂ ^? , F^?, TH, Ca²⁺, K⁺, Mg²⁺, Na⁺, and DS) were determined for 41 samples collected from fourteen places in Algeria. The temperature of the thermal water samples at collection sites varied from 26°C to 86°C. pH values varied from 6.5 to 8.5 (i.e., from slightly acidic to moderately alkaline); 90.24% of the samples exhibited relatively high salinity (DS?=?550–5,500 mg L^?1). Total hardness measurements indicated these waters to be moderately hard. Forty-six percent of the samples are Na–Cl in character. The ratios Na⁺/Ca²⁺, Na⁺/Mg²⁺, and (Na⁺ + K⁺)/(Ca²⁺ + Mg²⁺) were high in 90.24% of the samples. This indicates the ion exchange process is important, which indicates that most of the Algerian thermal waters had developed over a long period at a depth sufficient to react with the rock. Statistical analyses of the physicochemical data gave positive correlation values, thereby enabling good interpretation of the results and revealing the composition of ions present in the thermal waters, as well as some information about their origin. The therapeutic properties associated with thermal waters encourage people at spas to drink the water they bathe in. Therefore, we examined the drinkability of these thermal waters. World Health Organization (WHO 1993) standards were used to evaluate the thermal water quality for drinking. With respect to hardness, the samples were classified as moderately hard (58.54% of the samples), very hard (36.58% of the samples), and soft (4.88% of the samples). The drinkability study shows that only 16 samples of the investigated waters were drinkable and thus could be consumed without special precaution.     

The tubificidae (Annelida,oligochaeta) of a louisiana estuary: Ecology and systematics,with the description of a new species

Spatial and temporal variations in the abundances and distributions of oligochaetes of a southwestern Louisiana estuary were examined as part of a long term study of community structure of benthic macroinvertebrates. Quantitative samples were collected at monthly intervals from nine stations for two years and an additional 17 stations were sampled once. A tubificid oligochaete,Tubificoides denouxi n. sp., is described from the five species collected. The two predominant oligochaetes,Tubificoides heterochaetus andT. denouxi, were congeneric and exhibited completely allopatric distributions. Two oligochaete species with-restricted distributions,Monopylephorus helobius andLimnodriloides sp., were sympatric withT. denouxi, whileThalassodrilides belli, although less abundant, was sympatric with bothT. denouxi andT. heterochaetus. Sexually mature specimens ofT. denouxi andT. belli were collected only in the summer,T. heterochaetus was sexually mature in both winter and summer collections, andMonopylephorus helobius was sexually mature in spring and summer collections. Many of the studies of Oligochaeta have concluded that correlation exists between sediment grain size and species demography. Our data demonstrate a strong relationship between salinity and the abundance and distribution of estuarine species.Tubificoides denouxi was found only within the salinity range of 14.8 to 22.0‰ salinity,T. heterochaetus was found only within the range of 2.3 to 14.1‰, andT. belli had a salinity distribution intermediate between the previous species. No relationship was found between sediment grain-size analysis, water depth or hydrographic variables and species distribution.     

Isolation,biodegradation ability and molecular detection of hydrocarbon degrading bacteria in petroleum samples from a Brazilian offshore basin

The detection of microorganisms with potential for biodeterioration and biodegradation in petroleum fields is of great relevance, since these organisms may be related to a decrease in petroleum quality in the reservoirs or damage in the production facilities. In this sense, petroleum formation water and oil samples were collected from the Campos Basin, Brazil, with the aim of isolating microorganisms and evaluating their ability to degrade distinct classes of hydrocarbon biomarkers (9,10-dihydrophenanthrene, phytane, nonadecanoic acid and 5α-cholestane). Twenty eight bacterial isolates were recovered and identified by sequencing their 16S rRNA genes. Biodegradation assays revealed that bacterial metabolism of hydrocarbons occurred through reactions based on oxidation, carbon–carbon bond cleavage and generation of new bonds or by the physical incorporation of hydrocarbons into microbial cell walls. Based on the biodegradation results, selective PCR-based systems were developed for direct detection in petroleum samples of bacterial groups of interest, namely Bacillus spp., Micrococcus spp., Achromobacter xylosoxidans, Dietzia spp. and Bacillus pumilus. Primer sets targeting 16S rRNA genes were designed and their specificity was confirmed in silico (i.e. computational analysis) and in PCR reactions using DNA from reference strains as positive and negative controls. Total DNA from oil was purified and the amplification tests revealed the presence of the target bacteria in the samples, unraveling a significant potential for petroleum deterioration in the reservoirs sampled, once proper conditions are present for hydrocarbon degradation. The application of molecular methods for rapid detection of specific microorganisms in environmental samples would be valuable as a supporting tool for the evaluation of oil quality in production reservoirs.