A layered numerical model for simulating the generation and propagation of internal tides over continental slope

A layered three-dimensional nonlinear numerical model was constructed to simulate the generation and propagation of internal tides over the continental slope. The simulation was split into external mode computation (EMC) and internal mode computation (IMC) to minimize the computational load. IMC was carried out once after EMC was implemented N times. As to EMC, a semi-implicit numerical scheme was applied in such a way that the pressure gradient terms and the velocity divergence terms were discretized semi-implicitly, but the other terms were discretized explicitly. Eulerian-Lagrangian explicit discretization was applied to the convective terms simultaneously. As a result, the stability of EMC did not depend on the wave celerity and time step was not limited by the CFL condition. More than that, use of the conjugate gradient accelerated Jacobi method further improved the computational efficiency of the model. Contribution No. 3588 from the Institute of Oceanology, Chinese Academy of Sciences. Project 49676275 supported by NSFC and National Special Research Program 97-925-05-02.     

Spatial and temporal variations of Synechococcus and picoeukaryotes in the Taiwan Strait,China

The size-fractionated phytoplankton biomass, and the spatial and temporal variations in abundance of Synechococcus (SYN) and picoeukaryotes (PEUK) were measured in the Taiwan Strait during three cruises (August 1997, February-March 1998, and August 1998). The results show that picophytoplankton and nanophytoplankton dominate the phytoplankton biomass, in average of 38% and 40%, respectively. SYN and PEUK varied over time in abundance and carbon biomass, greater in summer than in winter, in range of (7.70–20...     

A layered numerical model for simulating the generation and propagation of internal tides over continental slope III. Numerical experiments and simulation

The layered model in Part I was used to simulate the internal tide in a stratified, two layer, and rectangular sea area with step-like topography. The internal tide current velocities of the upper and lower layers and the interfacial elevations were computed and the effect of the upper layer water depth and density difference were studied. Numerical experiments verified that the model can correctly simulate internal tides. The model was also applied to the northwestern part of the South China Sea to simulate the internal tides there with real topography. The distributions of internal tide amplitude in interfaces were delineated. Contribution No. 3590 from the Institute of Oceanology, Chinese Academy of Sciences. Project 49676275 supported by NSFC and also supported by National Special Research Program 97-926-05-02.     

Decadal variability of chlorophyll a in the South China Sea: a possible mechanism

Four climatologies on a monthly scale (January, April, May and November) of chlorophyll a within the South China Sea (SCS) were calculated using a Coastal Zone Color Scanner (CZCS) (1979-1983) and the Sea-viewing Wide Field-of-view Sensor (SeaWiFS) (1998-2002). We analyzed decadal variability of chlorophyll a by comparing the products of the two observation periods. The relationships of variability in chlorophyll a with sea surface wind speed (SSW), sea surface temperature (SST), wind stress (WS), and mixed layer depth (MLD) were determined. The results indicate that there is obvious chlorophyll a decadal variability in the SCS. The decadal chlorophyll a presents distinct seasonal variability in characteristics, which may be as a result of various different dynamic processes. The negative chlorophyll a concentration anomaly in January was associated with the warming of SST and a shallower MLD. Generally, there were higher chlorophyll a concentrations in spring during the SeaWiFS period compared with the CZCS period. However, the chlorophyll a concentration exhibits some regional differences during this season, leading to an explanation being difficult. The deepened MLD may have contributed to the positive chlorophyll a concentration anomalies from the northwestern Luzon Island to the northeastern region of Vietnam during April and May. The increases of chlorophyll a concentration in northwestern Borneo during May may be because the stronger SSW and higher WS produce a deeper mixed layer and convective mixing, leading to high levels of nutrient concentrations. The higher chlorophyll a off southeastern Vietnam may be associated with the advective transport of the colder water extending from the Karimata Strait to southeastern Vietnam.     

Spatial and temporal variations of <Emphasis Type="Italic">Synechococcus</Emphasis> and picoeukaryotes in the Taiwan Strait,China

The size-fractionated phytoplankton biomass, and the spatial and temporal variations in abundance of Synechococcus (SYN) and picoeukaryotes (PEUK) were measured in the Taiwan Strait during three cruises (August 1997, February–March 1998, and August 1998). The results show that picophytoplankton and nanophytoplankton dominate the phytoplankton biomass, in average of 38% and 40%, respectively. SYN and PEUK varied over time in abundance and carbon biomass, greater in summer than in winter, in range of (7.70–209.2)×10⁶ and (0.75–15.4)×10⁶ cells/cm² in the abundance, and 1.93–52.3 and 1.57–32.4 μgC/cm² in the carbon biomass, for SYN and PEUK, respectively. The horizontal distributions of both groups were diurnal but heterogeneous in abundance, depending on the groups and layer of depths. Temperature is the key controlling factor for picophytoplankton distribution (especially in winter) in the Strait. Supported by Natural Science Foundation of China (No.40730846; 40521003)     

Seasonal-to-interannual variability of chlorophyll in central western South China Sea extracted from SeaWiFS

Using 10-year (January 1998–October 2007) dataset of Sea-viewing Wide Field-of-view Sensor (SeaWiFS), we extracted the dominant spatial patterns and temporal variations of the chlorophyll distribution in the central western South China Sea (SCS) through Empirical Orthogonal Function (EOF) analysis. The results show that the first EOF mode is characterized by a high chlorophyll concentration zone along the Vietnam coast. We found two peaks in summer (July–August) and in winter (December), respectively, in no...     

Long-term variability of the sharp thermocline in the Yellow and East China Seas

Based on observed temperature data since the 1950s, long-term variability of the summer sharp thermocline in the Yellow Sea Cold Water Mass (YSCWM) and East China Sea Cold Eddy (ECSCE) areas is examined. Relationships between the thermocline and atmospheric and oceanic forcing were investigated using multiyear wind, Kuroshio discharge and air temperature data. Results show that: 1) In the YSCWM area, thermocline strength shows about 4-year and 16-year period oscillations. There is high correlation between summer thermocline strength and local atmospheric temperature in summer and the previous winter; 2) In the ECSCE area, interannual oscillation of thermocline strength with about a 4-year period (stronger in El Ni o years) is strongly correlated with that of local wind stress. A transition from weak to strong thermocline during the mid 1970s is consistent with a 1976/1977 climate shift and Kuroshio volume transport; 3) Long-term changes of the thermocline in both regions are mainly determined by deep layer water, especially on the decadal timescale. However, surface water can modify the thermocline on an interannual timescale in the YSCWM area.     

Effects of internal tidal dissipation and self-attraction and loading on semidiurnal tides in the Bohai Sea,Yellow Sea and East China Sea: a numerical study

A parameterized internal tide dissipation term and self-attraction and loading(SAL) tide term are introduced in a barotropic numerical model to investigate the dynamics of semidiurnal tidal constituents M_2 and S_2 in the Bohai Sea, Yellow Sea and East China Sea(BYECS). The optimal parameters for bottom friction and internal dissipation are obtained through a series of numerical computations. Numerical simulation shows that the tide-generating force contributes 1.2% of M_2 power for the entire BYECS and up to 2.8% for the East China Sea deep basin. SAL tide contributes 4.4% of M_2 power for the BYECS and up to 9.3% for the East China Sea deep basin. Bottom friction plays a major role in dissipating tidal energy in the shelf regions, and the internal tide eff ect is important in the deep water regions. Numerical experiments show that artifi cial removal of tide-generating force in the BYECS can cause a signifi cant dif ference(as much as 30 cm) in model output. Artifi cial removal of SAL tide in the BYECS can cause even greater diff erence, up to 40 cm. This indicates that SAL tide should be taken into account in numerical simulations, especially if the tide-generating force is considered.     

Thermal lenses and internal solitons in Chapala Lake, Mexico

INTRODUCTIONThelargestlakeinMexicoandthirdlargestinLatinAmerica,ChapalaLake(approximately2 0°N) ,is 1 50 0mabovesealevel,measures 75× 2 5km ,hasaveragedepthof6m (maximumdepthcloseto 1 1m)andamountainchainalongitsnorthernandsouthernshores (Fig .1a) .TheLermaRiverflowsintoit;theSantiagoRiverflowsoutofit.Thebeautifullandscape,andwarmclimateconducivetobreezecirculationalongitsshore ;absenceofabrupttemperaturevariations,andthemoderateairhumidityat tractmanytouriststothelake .Manyretirees…     

Seasonal variability of salinity budget and water exchange in the northern Indian Ocean from HYCOM assimilation

Based on HYbrid Coordinate Ocean Model (HYCOM) assimilation and observations, we analyzed seasonal variability of the salinity budget in the southeastern Arabian Sea (AS) and the southern part of the Bay of Bengal (BOB), as well as water exchange between the two basins. Results show that fresh water flux cannot explain salinity changes in salinity budget of both regions. Oceanic advection decreases salinity in the southeastern AS during the winter monsoon season and increases salinity in the southern BOB during the summer monsoon season. In winter, the Northeast Monsoon Current (NMC) carries fresher water from the BOB westward into the southern AS; this westward advection is confined to 4°-6°N and the upper 180 m south of the Indian peninsula. Part of the less saline water then turns northward, decreasing salinity in the southeastern AS. In summer, the Southwest Monsoon Current (SMC) advects high-salinity water from the AS eastward into the BOB, increasing salinity along its path. This eastward advection of high-salinity water south of the India Peninsula extends southward to 2°N, and the layer becomes shallower than in winter. In addition to the monsoon current, the salinity difference between the two basins is important for salinity advection.     

Effect of copper on the growth of shrimps Litopenaeus vannamei: water parameters and copper budget in a recirculating system

Shrimps( Litopenaeus vannamei) were intensively cultured in a recirculating aquaculture system for 98 days to investigate effects of 0.3 mg/L Cu on its performance, Cu budget, and Cu distribution. Shrimps in Cu-treated systems had greater mean final weight(11.10 vs 10.50 g), body length(107.23 vs 106.42 mm), survival rate(67.80% vs 66.40%), and yield(6.42 vs 5.99 kg/m 3), and lower feed conversion ratio(1.20 vs 1.29) than those in control systems but the differences were not significant. Vibrio numbers remained stable(10 4 –10 6 colony forming units/mL) in the rearing tanks of both control and treated systems. Total ammonium-N, nitrite-N, nitrate-N, pH, chemical oxygen demand, 5-day carbonaceous biochemical oxygen demand, and total suspended solids were similar in controls and treatments. Dissolved Cu concentration in the treated systems decreased from 0.284 to 0.089 mg/L while in the control systems it increased from 0.006 2 to 0.018 mg/L. The main sources of Cu in the treated systems were the artificially added component(75.7% of total input), shrimp feed(21.0%), water(2.06%), and shrimp biomass(1.22%). The major outputs of Cu occurred via the mechanical filter(41.7%), water renewal(15.6%), and draining of the sediment trap(15.1%). The foam fractionator removed only 0.69% of total Cu input. Harvested shrimp biomass accounted for 11.68% of Cu input. The Cu concentration of shrimps in the Cu-treated systems(30.70 mg/kg wet weight) was significantly higher than that in control systems(22.02 mg/kg). Both were below the maximum permissible concentration(50 mg/kg) for Cu in seafood for human consumption in China. Therefore, recirculating systems can be used for commercial on-growing of Litopenaeus vannamei without loss of shrimp quality, even in water polluted by 0.30 mg/L Cu. The mechanical filter is the main route for Cu removal.     

Molecular Cloning and Expression ofPoIR2, a Novel Gene Involved in Immune Response in Japanese Flounder （Paralichthys olivaceus）

A novel immune-related gene was expressed in Japanese flounder (Paralichthys olivaceus) injected with Vibrio anguillarum. The complete cDNA contained a 169 bp 5’UTR, a 336 bp open reading frame (ORF) encoding 111 amino acids and a 556bp 3’UTR. Six exons and five introns were identified in the PoIR2 gene. Blastp similarity comparison showed its encoding protein had 50% similarity to Danio rerio neuromedin S (NMS), but further alignment indicated they did not have NMS C-terminal conservational signature domain. So it was not defined as an NMS homologue. Protein structure analysis indicated it had a 26aa signal peptide and was a secretory pathway protein. RT-PCR demonstrated that the expression of PoIR2 was quickly induced and drastically increased in liver, kidney, spleen, gills, intestine, heart, and skeletal muscle after infected with V. anguillarum. These results indicated that the PoIR2 might play some important role in Japanese flounder immune response system. This gene was named PoIR2 (P.olivaceus immune-related gene 2, GenBank accession number: EU224372). The mature PoIR2 peptide was expressed in BL21(DE3) pLysS using pET-32a(+) vector and a great part of the recombinant mature peptide existed as soluble type.