Oceanographic influences on seabirds and cetaceans of the eastern tropical Pacific: A review

This paper is part of a comprehensive review of the oceanography of the eastern tropical Pacific, the oceanic region centered on the eastern Pacific warm pool, but also including the equatorial cold tongue and equatorial current system, and summarizes what is known about oceanographic influences on seabirds and cetaceans there. The eastern tropical Pacific supports on the order of 50 species of seabirds and 30 species of cetaceans as regular residents; these include four endemic species, the world’s largest populations for several others, three endemic sub-species, and a multi-species community that is relatively unique to this ecosystem. Three of the meso-scale physical features of the region are particularly significant to seabirds and cetaceans: the Costa Rica Dome for blue whales and short-beaked common dolphins, the Equatorial Front for planktivorous seabirds, and the countercurrent thermocline ridge for flocking seabirds that associate with mixed-species schools of spotted and spinner dolphins and yellowfin tuna. A few qualitative studies of meso- to macro-scale distribution patterns have indicated that some seabirds and cetaceans have species-specific preferences for surface currents. More common are associations with distinct water masses; these relationships have been quantified for a number of species using several different analytical methods. The mechanisms underlying tropical species–habitat relationships are not well understood, in contrast to a number of higher-latitude systems. This may be due to the fact that physical variables have been used as proxies for prey abundance and distribution in species–habitat research in the eastern tropical Pacific.Though seasonal and interannual patterns tend to be complex, species–habitat relationships appear to remain relatively stable over time, and distribution patterns co-vary with patterns of preferred habitat for a number of species. The interactions between seasonal and interannual variation in oceanographic conditions with seasonal patterns in the biology of seabirds and cetaceans may account for some of the complexity in species–habitat relationship patterns.Little work has been done to investigate effects of El Niño-Southern Oscillation cycles on cetaceans, and results of the few studies focusing on oceanic seabirds are complex and not easy to interpret. Although much has been made of the detrimental effects of El Niño events on apex predators, more research is needed to understand the magnitude, and even direction, of these effects on seabirds and cetaceans in space and time.     

Sport fisheries: Opportunities and challenges for diversifying coastal livelihoods in the Pacific

High population growth rates and poverty are likely to elevate the vulnerability of many coastal communities in the Pacific region to climate change. Alternative livelihood strategies which can generate income and simultaneously conserve fish stocks and their habitats are a priority. This paper investigates the feasibility of ‘sport fishing’ (recreational catch and release angling for particular species of predatory game fish) as such a strategy. The limited research of sport fisheries in developing countries is augmented with a review of community-based ecotourism, integrated conservation and development projects (ICDPs) and common property management literature to propose design principles. Five pre-requisite principles for the success of sport fishery enterprises are suggested. First, adequate local capacity must be available to manage a tourism business and facilities, supported by cross-scale co-management amongst stakeholders. Second, appropriate governance arrangements must be in place to ensure the equitable dispersal of benefits to all members of the local community, and conflict resolution. Third, resource-ownership boundaries and rights must be clearly delineated before the enterprise begins in order to minimise the potential for future conflict. Fourth, social, biodiversity and ecosystem service co-benefits should result from the enterprise. These should include improvements in income, health, education, food security, the status of the target and non-target species and their habitat and non-fishery ecosystem services. Fifth, monitoring and evaluation of these principles is required within an adaptive co-management framework which takes a social–ecological systems approach and includes all stakeholders in social learning and power-sharing. Through this, broader impacts of the enterprise may emerge which go beyond the standard assessment of ecotourism and ICDP success in financial or biodiversity terms. These principles now need to be tested by researching the experiences of case studies of sport fishing enterprises in the Pacific.     

Applications of Geographic Information Systems (GIS) to habitat assessment and marine resource management

Marine scientists often assess habitats to understand the distribution and relative abundance of marine resources. Due to the spatial nature of habitats and associated temporal changes, however, assimilating data using traditional analytical methods is often difficult. Geographic Information Systems (GIS) are proving to be effective tools to help address problems inherent in the analysis of spatial data, GIS can be used to effectively collate, archive, display, analyze, and model spatial and temporal data. Additionally, by combining dissimilar data types, such as socio-political boundaries, bottom types, and fish distributions, for example, resource managers can use GIS to make informed management decisions. In this way, GIS provides resource managers with a means to integrate scientific data with prevailing cultural values and traditions. We have developed a working GIS for the Monterey Bay National Marine Sanctuary that allows interpretation of many terrestrial and marine data sets, including inter-tidal monitoring data, permit locations, seabird strandings, fisheries catch data, habitat types, marine political boundaries, as well as land cover classification from satellite imagery, watersheds, streams, roads, and political boundaries. We have linked terrestrial and marine data to create a broad spatial and temporal database that will be used in a variety of ways such as evaluating natural processes, permitting and monitoring coastal development and assessing environmental impacts (e.g. oil spills).     

Implications of defining fisheries closed areas based on predicted habitats in Shetland: A proactive and precautionary approach

During 2010 a set of 22 voluntary closed areas, distributed around Shetland, were proposed by local industry in order to help protect and conserve threatened habitats from potential physical disturbance from scallop dredging. Initially, closed areas were implemented on a precautionary basis over predicted beds of maerl and horse mussel (Modiolus modiolus) derived from historical data. Horse mussel and maerl beds are classed as priority habitats which have been identified as being threatened and requiring conservation under the UK Biodiversity Action Plan (UK BAP). Legalisation of the voluntarily adopted closed areas occurred in 2011. Detailed surveys were conducted to map each closed area with specific reference to the defining features located within. Closed areas were surveyed using a hull mounted multibeam system and ground-truthed with an underwater camera system. Information was imported to a Geographic Information System (GIS) in order to create georeferenced habitat maps of the two species of interest. The appropriateness of each closed area was assessed and a proposed methodology and procedure outlined for any future closed areas. The primary aim was to provide information on which to test the validity of initial closed area boundaries and subsequently allow managers to refine and add to them in the future. The survey illustrated the need to have good quality acoustic and visual survey work undertaken whenever areas have been closed based on historical data and/or predicted habitats. Predicted beds were not found to be representative of the survey findings. The survey highlighted the lack of good quality, robust, accurate, and up to date species information for the waters around Shetland, especially with regard to priority marine features. Although some were neither fully protecting the UK BAP habitats they were designed to protect nor were protecting any UK BAP habitats, a degree of protection had been conferred to some priority features in the first iteration of implementation of closed areas. Survey data were subsequently used to legally alter the closed area boundaries to more appropriately reflect the distribution of priority features. Recommendations were made on appropriate procedures for defining a species bed and on the wider implications of the study’s findings for other fisheries areas developing spatial management plans.     

Guiding ecological principles for marine spatial planning

The declining health of marine ecosystems around the world is evidence that current piecemeal governance is inadequate to successfully support healthy coastal and ocean ecosystems and sustain human uses of the ocean. One proposed solution to this problem is ecosystem-based marine spatial planning (MSP), which is a process that informs the spatial distribution of activities in the ocean so that existing and emerging uses can be maintained, use conflicts reduced, and ecosystem health and services protected and sustained for future generations. Because a key goal of ecosystem-based MSP is to maintain the delivery of ecosystem services that humans want and need, it must be based on ecological principles that articulate the scientifically recognized attributes of healthy, functioning ecosystems. These principles should be incorporated into a decision-making framework with clearly defined targets for these ecological attributes. This paper identifies ecological principles for MSP based on a synthesis of previously suggested and/or operationalized principles, along with recommendations generated by a group of twenty ecologists and marine scientists with diverse backgrounds and perspectives on MSP. The proposed four main ecological principles to guide MSP—maintaining or restoring: native species diversity, habitat diversity and heterogeneity, key species, and connectivity—and two additional guidelines, the need to account for context and uncertainty, must be explicitly taken into account in the planning process. When applied in concert with social, economic, and governance principles, these ecological principles can inform the designation and siting of ocean uses and the management of activities in the ocean to maintain or restore healthy ecosystems, allow delivery of marine ecosystem services, and ensure sustainable economic and social benefits.     

Predictive habitat modelling of humpback (Megaptera novaeangliae) and Antarctic minke (Balaenoptera bonaerensis) whales in the Southern Ocean as a planning tool for seismic surveys

Seismic surveys are frequently a matter of concern regarding their potentially negative impacts on marine mammals. In the Southern Ocean, which provides a critical habitat for several endangered cetacean species, seismic research activities are undertaken at a circumpolar scale. In order to minimize impacts of these surveys, pre-cruise planning requires detailed, spatio-temporally resolved knowledge on the likelihood of encountering these species in the survey area. In this publication we present predictive habitat modelling as a potential tool to support decisions for survey planning. We associated opportunistic sightings (2005–2011) of humpback (Megaptera novaeangliae, N=93) and Antarctic minke whales (Balaenoptera bonaerensis, N=139) with a range of static and dynamic environmental variables. A maximum entropy algorithm (Maxent) was used to develop habitat models and to calculate daily basinwide/circumpolar prediction maps to evaluate how species-specific habitat conditions evolved throughout the spring and summer months. For both species, prediction maps revealed considerable changes in habitat suitability throughout the season. Suitable humpback whale habitat occurred predominantly in ice-free areas, expanding southwards with the retreating sea ice edge, whereas suitable Antarctic minke whale habitat was consistently predicted within sea ice covered areas. Daily, large-scale prediction maps provide a valuable tool to design layout and timing of seismic surveys as they allow the identification and consideration of potential spatio-temporal hotspots to minimize potential impacts of seismic surveys on Antarctic cetacean species.     

Characteristics and landcover of estuarine boundaries: implications for the delineation of the South African estuarine functional zone

This study investigated whether the current lateral boundary for estuaries in South Africa, i.e. the estuarine functional zone (EFZ), includes all estuarine habitats. The EFZ covers 173 930 ha in 304 estuaries/outlets nationally. Field surveys and analysis of available aerial images showed that 82 (12 956.70 ha) of these estuaries (26%) had estuarine habitats occurring outside of this boundary. As a result of mapping scale, the National Vegetation Map does not represent habitats that are associated with small estuaries (approximately 50% of South Africa's estuaries). For estuaries in the Western and Eastern Cape provinces, most habitats have been lost due to urban development, whereas in subtropical areas (northern Eastern Cape and KwaZulu-Natal), cultivation has removed estuarine habitat. Although delineation of boundaries can be complicated by landcover changes, the estuarine lateral boundary in Cape estuaries could be identified based on sediment characteristics (moisture content, organic content, electrical conductivity), groundwater characteristics (salinity, conductivity and depth) and plant species. The delineation of the EFZ needs to be consistent, inclusive of all estuarine physical and biological processes, and cost-effective to identify so that it can protect estuarine habitats.     

Marine artificial micro‐reserves: a possibility for the conservation of endangered species living on artificial substrata

The installation of urban and commercial infrastructures on the coast has a severe impact on the marine environment. This impact is mostly negative but, simultaneously, some of the species that colonize artificial substrata (sometimes rare or threatened) find refuge in man‐made structures. The protection of endangered species is usually provided by marine protected areas or by laws that punish their damage or collection, but effective enclosure and custody must be achieved in the case of easily accessible intertidal species. We used the ferruginous limpet, Patella ferruginea, as a case study because it is the most endangered invertebrate in the Mediterranean. This species, which lives in the intertidal zone and is very accessible to people, is a free‐spawning, protandric hermaphrodite, highly dependent on population density and individual size for its reproductive success. Previous work by the authors found the species is especially abundant on artificial substrates on both shores of the Strait of Gibraltar, where people collect fewer of them. Spanish laws of coastal management do not allow the enclosure of the natural coastline, but artificial installations like harbour breakwaters may be closed or guarded, and visits for educational purposes may be carried out under control. The possibility of declaring some kind of environmental protection for these artificial areas would be a very helpful tool for conservation and management purposes. Protected individuals would grow larger and eventually produce exponentially more offspring, which could be transported by currents to adjacent habitats. Here we propose a protection concept for artificial sites termed Artificial Marine Micro‐Reserve (AMMR), where some endangered species experience a refuge from human disturbance. This concept is a modification of the land micro‐reserves that have been recently declared in small natural sites that keep rare plant species. A network of AMMRs would be the final objective, allowing the creation of a great metapopulation of P. ferruginea and also giving refuge to other endangered species that have been found to grow in this type of substratum. Critically, the declaration of a micro‐reserve cannot be used as a reason in favour of new construction because of the negative influence of such structures on the marine environment, together with the fact that there is no certainty that valuable species will settle on them.     

Forecasting the consequences of climate-driven shifts in human behavior on cetaceans

While climate change is expected to affect cetaceans primarily via loss of habitat and changes in prey availability, additional consequences may result from climate-driven shifts in human behaviors and economic activities. For example, increases in shipping, oil and gas exploration and fishing due to the loss of Arctic sea ice are highly likely to exacerbate acoustic disturbance, ship strikes, bycatch and prey depletion for Arctic cetaceans. In the tropics, climate change may result in increased hunting pressure on near-shore dolphins and whales off Asia, Latin America, Africa, and elsewhere as the availability of other marine resources diminishes. This study explores the range of potential consequences to cetaceans worldwide from predicted climate-driven shifts in human behavior, and evaluates the risks to particular species given their geographic ranges and habitat preferences. While concern about impacts of climate change on cetaceans has largely focused on polar species, the analysis presented here suggests tropical coastal and riverine cetaceans such as the Irawaddy dolphin, Indo-Pacific humpback dolphin, and finless porpoise are particularly vulnerable to those aspects of climate change that are mediated by changes in human behavior. Policy recommendations include the following: (1) information about cetacean populations should be incorporated into national, regional and international climate adaptation decisions wherever possible (for example, via GEF-sponsored adaptation initiatives); and (2) human-mediated impacts of climate change should be included in cetacean conservation and management plans, such as the management procedures of the International Whaling Commission (IWC), where possible. Because human responses to climate change are likely to evolve rapidly over the coming years and decades, it is important that local, regional and international cetacean conservation and management plans include regular reviews to allow them to adapt to new information.     

Habitat overlap between southern bluefin tuna and yellowfin tuna in the east coast longline fishery - implications for present and future spatial management

Southern bluefin tuna (SBT) are presently a quota-managed species in the multi-species eastern Australian tuna and billfish longline fishery (ETBF). Capture of SBT is regulated by quota, as is access to regions likely to contain SBT. A habitat prediction model combining data from an ocean model and pop-up satellite archival tags is used to define habitat zones based on the probability of SBT occurrence. These habitat zones are used by fishery managers to restrict access by ETBF fishers to SBT habitat during a May-November management season. The zones display a distinct seasonal cycle driven by the seasonal southward expansion and northward contraction of the East Australia Current (EAC) and as a result access by fishers to particular ocean regions changes seasonally. This species also overlaps with the commercially valuable yellowfin tuna (YFT), thus, we modified the SBT model to generate YFT habitat predictions in order to investigate habitat overlap between SBT and YFT. There is seasonal variation in the overlap of the core habitat between these two species, with overlap early (May-Jul) in the management season and habitat separation occurring towards the end (Aug-Nov). The EAC is one of the fastest warming ocean regions in the southern hemisphere. To consider the future change in distribution of these two species compared to the present and to explore the potential impact on fishers and managers of the future, we use future ocean predictions from the CSIRO Bluelink ocean model for the year 2064 to generate habitat predictions. As the ocean warms on the east coast of Australia and the EAC extends southward, our model predicts the suitable habitat for SBT and YFT will move further south. There was an increase in the overlap of SBT and YFT habitat throughout the management season, due to regional variation of each species’ habitat. These results illustrate that a management tradeoff exists between restricting fisher access to SBT habitat and allowing access to YFT habitat. We suggest that some options to address this tradeoff are possible by identifying the seasonal variability of the overlap.     

The occurrence of Clithon retropictus (v. Martens, 1879) (Gastropoda: Neritidae) in an unusual habitat, northern Jeju Island, Republic of Korea

Clithon retropictus is a neritid gastropod inhabiting mainly brackish water. Currently this species has been listed as a second grade endangered species of wildlife in Korea by the Ministry of Environment, due to the decrease in its population size. C. retropictus has previously been identified from estuaries on the south coast of Korea. In Jeju Island, this species has been reported only from the south coast. However, a population has recently been discovered on the north coast of the island in an apparently new type of habitat, under rocks adjacent to a dry riverbed on a muddy substrate. C. retropictus was found to be aggregated under some of the larger rocks, and the habitat was located near the high tide line. The present study reports some possible reasons for the occurrence of the population in this unusual habitat, and provides useful information on the biometry and population size which can be used in the management of this endangered species.     

黄河口及其邻近水域春季东亚江豚分布规律

东亚江豚(Neophocaena asiaeorientalis sunameri)是渤黄海水域仅有的常见鲸类动物,为我国二级保护水生野生动物,在世界自然保护联盟(International Union for Conservation of Nature,IUCN)物种名录中被列为濒危级.渤海黄河口及其邻近水域是东亚...     

The conservation of seals in Irish waters: How research informs policy

Ireland's waters represent a valuable resource encompassing productive fishing grounds and important oil and gas reserves. As a species rich marine environment, Ireland's waters are also an important habitat for many species of marine mammal. Specifically, grey seals (Halichoerus grypus) and harbour seals (Phoca vitulina) are widespread in Irish coastal waters and at least 24 species of cetacean have been reported at sea. The coastal zone represents critical habitat for many of these species, in particular seals that use both terrestrial and aquatic coastal habitat and are vulnerable to habitat degradation. Increasing exploitation of marine resources has increased their exposure to a range of anthropogenic effects including pollution and habitat loss. As top predators seals interact with commercial fisheries both directly and indirectly for resources and conflicts arise. The relatively recent move towards ‘greener’ resource exploitation such as marine renewable energy does not come without negative consequences for marine mammals including seals, which are afforded protection under national and international conservation legislation, highlighting the difficulties faced by resource managers. The sustainable exploitation of resources whilst conserving biodiversity is a challenging task and effective management implementation depends on appropriate policy informed by reliable scientific data. This paper outlines the conservation needs of seals in Irish waters, reviews our current knowledge of these species in Irish water, provides a critical analysis of the existing legislative framework and describes how research outputs can inform present and future policy decisions.     

Assessment of the likely sensitivity to climate change for the key marine species in the southern Benguela system

Climate change is altering many environmental parameters of coastal waters and open oceans, leading to substantial present-day and projected changes in the distribution, abundance and phenology of marine species. Attempts to assess how each species might respond to climate change can be data-, resource- and time-intensive. Moreover, in many regions of the world, including South Africa, species may be of vital socioeconomic or ecological importance though critical gaps may exist in our basic biological or ecological knowledge of the species. Here, we adapt and apply a trait-based sensitivity assessment for the key marine species in the southern Benguela system to estimate their potential relative sensitivity to the impacts of climate change. For our analysis, 40 priority species were selected based on their socioeconomic, ecological and/or recreational importance in the system. An extensive literature review and consultation with experts was undertaken concerning each species to gather information on their life history, habitat use and potential stressors. Fourteen attributes were used to estimate the selected species’ sensitivity and capacity to respond to climate change. A score ranging from low to high sensitivity was given for each attribute, based on the available information. Similarly, a score was assigned to the type and quality of information used to score each particular attribute, allowing an assessment of data-quality inputs for each species. The analysis identified the white steenbras Lithognathus lithognathus, soupfin shark Galeorhinus galeus, St Joseph Callorhinchus capensis and abalone Haliotis midae as potentially the most sensitive species to climate-change impacts in the southern Benguela system. There were data gaps for larval dispersal and settlement and metamorphosis cues for most of the evaluated species. Our results can be used by resource managers to determine the type of monitoring, intervention and planning that may be required to best respond to climate change, given the limited resources and significant knowledge gaps in many cases.     

珠江口3种鲸豚的MHC-I基因多态性研究

旨在了解珠江口栖息的中华白海豚(Sousa chinensis)、宽脊江豚(Neophocaena phocaenoides)和点斑原海豚(Stenella attenuate)免疫相关基因MHC-I(Major Histocompatibility Complex)的多态性及其表达情况,以期为这3种鲸豚的保育工作提供基础资料。通过克隆测序的方法,首次证实MHC-I基因在这3种鲸豚体内表达。选择压力分析,表明MHC-I基因在这3种鲸豚中均受到强烈的正选择作用,提示其具有重要的免疫功能。3种鲸豚的MHC-I基因在系统发育树上相互混杂在一起,表明MHC-I基因存在跨物种多态性。结合选择压力分析和跨物种多态性,发现MHC-I基因受到平衡选择作用。珠江口3种鲸豚MHC-I基因多态性可能由平衡选择维持。     

Analyzing the habitat suitability for migratory birds at the Chongming Dongtan Nature Reserve in Shanghai,China

The Dongtan Nature Reserve, one of the largest nature reserves in East Asia, is located in the mouth of the Yangtze Estuary and is an important habitat for migratory birds. The Dongtan wetlands were listed in the Chinese Protected Wetlands in 1992, and were designated as internationally important under the Ramsar Wetlands Convention in 2001 and as a national nature reserve in 2005. By their very nature and location, the estuarine and coastal habitats are dynamic and their biodiversity conservation and management relies on up-to-date spatial information. By establishing qualitative and quantitative relationships between bird populations and key habitat factors such as elevation, land cover type, tidal creek density and macrophytobenthos biomass, we developed an object-oriented image approach, in conjunction with Geographical Information Systems and the data from current field surveys, to analyze and assess the habitat suitability for the main types of birds, namely Anatidae, Charadriidae, Ardeidae and Laridae, at the reserve. The results from this study showed that about 40% of the total area of the Dongtan Reserve contained suitable habitats for these four bird families. The Scirpus mariqueter zone, mudflat zone, and tidal creeks were the most important habitats for these birds. This study indicated the potential of this approach for objective and effective evaluation of the species habitat suitability in a dynamic estuarine and coastal area. The implications of the results as a tool for biodiversity conservation, wetland conservation, and ecosystem management are discussed.     

中国濒危红树植物研究与恢复现状

我国红树植物种类约占全世界的1/3,在世界红树植物多样性保护中占有重要地位.但在我国近一半的红树植物呈现出不同程度的濒危状态,科学保护迫在眉睫.本文从濒危红树植物的濒危现状、濒危机制、保护性研究工作和恢复现状等方面对我国濒危红树植物进行了综述,对濒危红树植物的种群扩大和恢复提出了建议.本文认为我国濒危红树植物濒危特点为...     

The intermingling of benthic macroinvertebrate communities during a period of shifting range: The “East of Nantucket” Atlantic Surfclam Survey and the existence of transient multiple stable states

A survey of the region eastward of Nantucket provided an opportunity to examine the cold temperate–boreal boundary along the high‐energy Great South Channel. Here described are the benthic macroinvertebrate community types encountered, with a focus on the influence of climate change on the range boundaries of the benthic biomass dominants and the potential existence of transient multiple stable states. The survey identified three primary community types. The shallowest sites were occupied by a surfclam‐dominated community, comprising an abundance of large (≥150 mm) surfclams, and a few common attached epibiota primarily attached to exposed surfclam shell. Two communities exist at intermediate depths, one dominated by submarket and small market‐size surfclams (<150 mm) and the other, created by mussel mats and their attendant epibiota, crabs, sea urchins, and other mobile epifauna. Mussels are a foundational species, establishing a hard‐bottom terrain conducive to these other denizens in soft‐bottom habitat. Cobbles were nearly ubiquitous, rocks were routinely recovered, and boulders were encountered occasionally. Slow growing attached epibionts were exceedingly rare and mobile epifauna were not obviously associated with these large sedimentary particles; nor were the surfclam or mussel communities. The frequency of barnacle scars suggests sediment scour under the high‐flow regime characteristic of the surveyed region, which voids the habitat potential of these sedimentary particles. The abundance of surfclam shell indicates that surfclams have inhabited the shoaler depths for an extended time; limited shell at deeper sites supports the inference from the absence of large animals that these sites are relatively newly colonized and represent further evidence of an offshore shift in range brought on by increasing bottom water temperatures. The dichotomous nature of the two primary community types at mid‐depths suggests that these two communities represent multiple stable states brought on by the interaction of an invading cold temperate species with the receding boreal fauna resulting in a transient intermingling of species, which, however, structure the habitat into exclusionary stable states rather than overlapping in a co‐occurrence ecotone.