Role of shellfish hatchery as a reservoir of antimicrobial resistant bacteria

The main aim of this study was to determine the occurrence of resistant bacteria in florfenicol-treated and untreated scallop larval cultures from a commercial hatchery and to characterize some selected florfenicol-resistant strains. Larval cultures from untreated and treated rearing tanks exhibited percentages of copiotrophic bacteria resistant to florfenicol ranging from 0.03% to 10.67% and 0.49–18.34%, respectively, whereas florfenicol resistance among oligotrophic bacteria varied from 1.44% to 35.50% and 3.62–95.71%, from untreated and treated larvae, respectively. Florfenicol resistant microbiota from reared scallop larvae mainly belonged to the Pseudomonas and Pseudoalteromonas genus and were mainly resistant to florfenicol, chloramphenicol, streptomycin and co-trimoxazole. This is the first study reporting antimicrobial resistant bacteria associated to a shellfish hatchery and the results suggest that a continuous surveillance of antimicrobial resistance even in absence of antibacterial therapy is urgently required to evaluate potential undesirable consequences on the surrounding environments.     

Gilthead seabream (Sparus aurata) carrying antibiotic resistant enterococci. A potential bioindicator of marine contamination?

Antibiotic resistance in bacteria is a growing problem that is not only restricted to the clinical setting but also to other environments such as marine species that harbor antibiotic resistant bacteria and therefore may serve as reservoirs for antibiotic-resistance genetic determinants. The aim of this study was to evaluate antibiotic resistance phenotypes in enterococci isolated from fecal samples of gilthead seabream and the associated mechanisms of resistance. A collection of 118 samples were analyzed and 73 enterococci were recovered. The strains showed high percentages of resistance to erythromycin and tetracycline (58.9% and 17.8%, respectively). Lower level of resistance (<13%) was detected for quinupristin-dalfopristin, ampicillin, high-level-gentamicin, high-level-streptomycin, high-level-kanamycin, ciprofloxacin and chloramphenicol. The erm(B), tet(L) or tet(M), aac(6′)-aph(2″) and aph(3′)-IIIa genes were shown in isolates resistant to erythromycin, tetracycline, high-level gentamicin and high-level kanamycin, respectively. Antibiotic resistance in natural microbiota is becoming a concern of human and environmental health.     

The metabolic and fitness costs associated with metal resistance in Nereis diversicolor

The population of Nereis diversicolor inhabiting the upper reaches of Restronguet Creek, Cornwall, UK is highly resistant to acute zinc and copper toxicity. Here we employ bioenergetic accounting and fecundity counts to demonstrate the energetic costs associated with this phenomenon in terms of the worms’ allocation of metabolic resources and reproductive output [P_r]. Metal-resistant animals exhibited a scope for growth that was 46-62% less than that of animals from two non-resistant reference populations, corresponding to a mean metabolic cost of 1.31 mJ h⁻¹ mg DW⁻¹. The resistant population also contained 13% less lipid than animals from the reference populations and 73-81% less carbohydrates. Consequently, mass-specific fecundity was reduced in resistant animals by 39-45%, although material investment in individual gametes did not appear to vary. This demonstrates fitness costs associated with metal resistance in this ecologically important polychaete and adds to our understanding of phenotypic trade-offs associated with resistance.     

Drug-resistance transfer in Escherichia coli in New York Bight sediment

Sediment from the sewage sludge dump site area in the New York Bight contains bacteria resistant to antibiotics and heavy metals. The purpose of this study was to determine if antibiotic resistance could be transferred from donor to recipient Escherichia coli strains inoculated into glass vessels containing sediment and seawater obtained near the dump site. Temperature was maintained at 10°C, the mean winter temperature of benthic water at the dump site. Transconjugants (recipients which inherit donor genes for tetracycline resistance) were isolated from the seawater and sediment within one hour after inoculation and were found in all subsequent sediment samples for one month. Donor and recipient E. coli remained viable in the sediment for at least one month. Our results indicate that sewage sludge polluted sediment may serve as an environment conducive to conjugal transfer of antibiotic resistance genes.     

Seismic microzonation of Chania,Crete (Greece) based on SASW measurements and non-linear site response analyses

Following a brief overview of past applications of, and more recent advances on seismic microzonation, the results of a seismic microzonation study for the city of Chania, Greece, are presented. The study was based on V_s vs. depth profiles obtained at 19 sites of the urban area by performing SASW measurements. The spatial distribution of V_s values was utilized in estimating V_s30 values, depth to bedrock and the fundamental ground period variation across the area of the city as well as for conducting 1-D finite element non-linear inelastic site response analyses. The input earthquake excitations employed in the response analyses were based on the results of an available seismic hazard study for the Chania Area. The results of analyses were utilized for establishing the spatial distribution of rock motion amplification, the expected ground motions and spectral values in the area of the city. Contour maps providing values of the expected ground motion in the urban area are given which may become a practical tool in assessing the seismic risk and expected damage in the Chania area. The maps can also be used in the design of new earthquake resistant structures or the seismic retrofitting of existing ones. Finally, the results were utilized to demonstrate the inadequacy of using V_s,30 values for classifying the soil conditions in the Chania area.     

Acute toxicity of inorganic mercury to Capitella

The polychaete worm Capitella capitata is shown to be fairly resistant to high concentrations of inorganic mercury. Survival of adults compared with those of the polychaete Ophryotrocha labronica shows that C. capitata can withstand 1 ppm Hg²⁺ for several days whilst O. labronica succombs to 0.5 ppm Hg²⁺ in 2 h.     

Echinoderms from Azores islands: An unexpected source of antibiotic resistant Enterococcus spp. and Escherichia coli isolates

The prevalence of antibiotic resistance and the implicated mechanisms of resistance were evaluated in Enterococcus spp. and Escherichia coli, isolated from a total of 250 faecal samples of echinoderms collected from Azorean waters (Portugal). A total of 144 enterococci (120 Enterococcus faecium, 14 E. hirae, 8 E. faecalis, 2 E. gallinarum) and 10 E. coli were recovered. High percentages of resistance in enterococci were found for erythromycin, ampicillin, tetracyclin and ciprofloxacin. The erm(A) or erm(B), tet(M) and/or tet(L), vat(D), aac(6′)-aph(2″) and aph(3′)-IIIa genes were found in isolates resistant to erythromycin, tetracycline, quinupristin/dalfopristin, high-level gentamicin and high-level kanamycin, respectively. Resistance in E. coli isolates was detected for streptomycin, amikacin, tetracycline and tobramycin. The aadA gene was found in streptomycin-resistant isolates and tet(A) + tet(B) genes in tetracycline-resistant isolates. The data recovered are essential to improve knowledge about the dissemination of resistant strains through marine ecosystems and the possible implications involved in transferring these resistances either to other animals or to humans.     

Antibiotic resistance of bacteria isolated from shrimp hatcheries and cultural ponds on Donghai Island, China

The resistance of bacteria to 12 different antibiotics was investigated in shrimp farms on Donghai Island, China. Antibiotic-resistant bacteria were found to be widespread in shrimp farms, indicating a high environmental risk. Further, significant differences were found in bacterial strains among farms (ANOVA, p < 0.05), showing resistance to antibiotics such as ampicillin, trimethoprim, compound sinomi, tetracycline, chloramphenicol and cefazolin. No significant differences in antibiotic resistance were found among 6 hatcheries evaluated in this study (ANOVA, p > 0.05), between exalted and traditional shrimp ponds (ANOVA, p > 0.05), and between cultural ponds and corresponding control water source sites (T-test, p > 0.05). In cultural ponds, no significant difference in bacterial resistance to antibiotics was found between water and sediment (T-test, p > 0.05), and antibiotic resistance of bacteria from water showed a significant positive correlation with that from sediment (p < 0.05). Therefore, our study indicates that bacterial multiple antibiotic resistance (MAR) is more widespread in shrimp hatcheries than ponds.     

Attenuation relations for strong seismic ground motion in the Himalayan region

Strong motion data from various regions of India have been used to study attenuation characteristics of horizontal peak acceleration and velocity. The strong ground motion data base considered in the present work consists of various earthquakes recorded in the northern part of India since 1986 with magnitudes 5.7 to 7.2. Using these data, relations for horizontal peak acceleration and velocity, which are $$\begin{gathered} log_{10} a = 1.14 + 0.31M + 0.65log_{10} R \hfill \\ log_{10} v = 0.571 + 0.41M + 0.768log_{10} R \hfill \\ \end{gathered} $$ have been proposed wherea is the peak horizontal acceleration in cm/sec²,v is the peak horizontal velocity in mm/sec,M is body wave magnitude, andR is the hypocentral distance in km. The proposed relations are in reasonable agreement with the small amount of strong ground motion data available for the northern part of India. The present results will be useful in estimating strong ground motion parameters and in the earthquake resistant design in the Himalayan region.     

Detection of antibiotic resistant bacteria inhabiting the sand of non-recreational marine beach

The present study examined the antibiotic resistance of heterotrophic bacteria, which were isolated from the sand of the beach located in the National Park of the southern Baltic Sea coast. The bacteria demonstrated low levels of antibiotic resistance. These microorganisms were the most resistant to cefaclor and clindamycin and the most sensitive to clarithromycin, doxycycline, gentamycin and oxytetracycline. The majority of bacteria inhabiting the sand of the studied beach were resistant to only one antibiotic out of 18 tested antibiotics in this study. The bacteria inhabiting the middle part of the beach and the dune were more antibiotic resistant than bacteria isolated from the seawater and the shoreline-seawater contact zone. Generally, there was no significant difference in antibiotic resistance between bacteria isolated from the surface and the subsurface sand layers. The bacterial antibiotic resistance level depends on the chemical structure of antibiotics.     

Occurrence and distribution antibiotic resistance of heterotrophic bacteria isolated from a marine beach

Antibiotic resistance of heterotrophic bacteria isolated from a sandy beach in Sopot, at the Southern Baltic Sea coast was determined. The levels of resistance of bacteria to various antibiotics differed considerably. Bacteria inhabiting the middle part of the beach and the dune were most resistant; the least resistant were bacteria isolated from the sea-beach contact zone. Generally, there were no significant differences in antibiotic resistance between pigmented and non-pigmented bacteria. Bacteria isolated from the surface layer of the sand were more resistant to the tested antibiotics than bacteria from the subsurface layers. The majority of bacterial strains were resistant to 3-8 antibiotics. Bacterial resistance to antibiotics was dependent on their chemical structure.     

Potential responses of oligochaetes (Annelida, Clitellata) to global changes: Experimental fertilization in a lowland stream of Argentina (South America)

One of the possible consequences of climatic change for streams and rivers in the pampean region of South America is an increment in nutrient loads. To analyze this possible perturbation on a biological scale, the response of oligochaetes to an experimental eutrophication of the La Choza Stream, Argentina was studied. We proposed that the addition of nutrients could increase the abundance, biomass, and species composition of the stream. Two stretches (Control and Treatment sites) were selected, with bimonthly samples being taken (March 2007 through February 2009) in two habitat types: the sediments and the aquatic vegetation. On each sampling occasion the environmental variables were measured. The nutrient addition consisted in the continuous dissolution of a commercial fertilizer. The oligochaete mean density and total biomass, the taxonomic richness, the Shannon diversity (H′), and the evenness (E) were calculated and the BACI ANOVA design used to compare the differences between the sites. Thirty-three species of the families Naididae (Naidinae, Pristininae, Tubificinae, and Rhyacodrilinae), Opistocystidae, Enchytraeidae plus Aphanoneura Aeolosomatidae were collected. The oligochaete abundance and biomass increased significantly in the sediments and on the aquatic vegetation, especially among the Naidinae and Pristininae during their asexual reproductive phase. The diversity and evenness varied significantly in the sediments with the nutrient addition. Significant differences in the species richness and diversity were found on the aquatic vegetation, with both increasing at the treatment site after the fertilization. A significant correlation (Spearman) was observed between the oligochaete density in the sediments and the NO₃-N and NH₄-N concentration in the water. The increment in the naidines resistant to the fertilizer throughout the experiment could be explained by the greater nutrient availability, their mode of reproduction, and their short life cycles. The results of our study suggested that the incorporation of nutrients modified the composition of the oligochaete assemblage in favor of herbivores and detrivores. The usefulness of these indicator organisms in monitoring freshwater systems is subsequently discussed.     

Molecular characterizations of chloramphenicol- and oxytetracycline-resistant bacteria and resistance genes in mariculture waters of China

In order to gain an understanding of the diversity and distribution of antimicrobial-resistant bacteria and their resistance genes in maricultural environments, multidrug-resistant bacteria were screened for the rearing waters from a mariculture farm of China. Both abalone Haliotis discushannai and turbot Scophthalmus maximus rearing waters were populated with abundant chloramphenicol-resistant bacteria. These bacteria were also multidrug resistant, with Vibriosplendidus and Vibriotasmaniensis being the most predominant species. The chloramphenicol-resistance gene cat II, cat IV or floR could be detected in most of the multidrug-resistant isolates, and the oxytetracycline-resistance gene tet(B), tet(D), tet(E) or tet(M) could also be detected for most of the isolates. Coexistence of chloramphenicol- and oxytetracycline-resistance genes partially explains the molecular mechanism of multidrug resistance in the studied maricultural environments. Comparative studies with different antimicrobial agents as the starting isolation reagents may help detect a wider diversity of the antimicrobial-resistant bacteria and their resistance genes.     

Are ARM and TRM analogs? Thellier analysis of ARM and pseudo-Thellier analysis of TRM

We test the possibility of using the pseudo-Thellier method as a means of determining absolute paleointensity. Thellier analysis of anhysteretic remanent magnetization (ARM) and pseudo-Thellier analysis of thermoremanent magnetization (TRM) have been carried out on a large collection of sized synthetic magnetites and natural rocks. In all samples, the intensity of TRM is larger than that of ARM and the ratio R (=TRM/ARM) is strongly grain size dependent. The best-fit slope (b_TA) from pseudo-Thellier analysis of TRM shows a linear correlation with R. The ratio b_TA/R yielded approximately correct paleointensities, although uncertainties are larger than in typical Thellier-type determinations. For single-domain and multidomain magnetites, alternating field and thermal stabilities of ARM and TRM are fairly similar. However, for ∼0.24 μm magnetite, ARM is both much less intense and less resistant to thermal demagnetization than TRM, reflecting different domain states for the two remanences and resulting in severely non-linear Arai plots for Thellier analysis of ARM.     

Changes of P, Ca, Al and Fe contents in fringe marshes along a pedogenic chronosequence in the Pearl River estuary, South China

Soil and plant samples were collected in four fringe marsh zones (i.e., A, B, C and D zones) along a pedogenic chronosequence in the Pearl River estuary in the Spring of 2009. Samples were subjected to a total digestion technique and analyzed for P, Ca, Al and Fe in order to study the changes of nutrient contents, storages in soils and their bioavailabilities to wetland plants (e.g. Cyperus malaccensis) in four zones. Results showed that soil Ca increased with depth along soil profiles, while P, Al and Fe generally kept constant in soil profiles in four zones. Al and Fe contents in the top 10 cm soils showed significant decreases from D to A zone, while a significant increase in Ca contents (P<0.05). Significant increases along pedogenic chronosequence for P, Al and Fe at 30-40 cm soil horizons were also observed. Ca was mainly accumulated in plant aboveground parts; Al and Fe were accumulated in the belowground parts; while P was homogenously distributed among the tissues of C. malaccensis. C. malaccensis in D zone had lower Bio-concentration factors (BCFs) of P in the shoots and Al and Fe in the roots, and higher values of Ca in the shoots than those in older zones (P<0.05). Compared to Al and Fe, both Ca and P had relatively higher translocation capacities for C. malaccensis, while only lower TFs for P and higher values for Al and Fe in D zone were observed than those in A and B zones (P<0.05). Except for Al with no significant changes, the total BCFs for P and Fe showed an increasing trend with soil ages, while a decreasing trend for Ca. The total bio-storage factors (TBSFs) of P and Ca declined with the pedogenic time, whereas an increase for Fe. The results of this study can contribute to the wetland conservation and management in the Pearl River estuarine region.     

Variations in leaf characteristics of three species of angiosperms with changing of altitude in Qilian Mountains and their inland high-altitude pattern

In this study,39 leaf samples of three angiosperms(Betula albo-sinensis,tree species;and Caragana jubata and Berberis diaphana,shrub species) were collected in the middle-east parts at 2300–3640 m asl of the Qilian Mountains to study the variations of leaf characteristics of angiosperms with altitude change in inland high-altitude regions of China.Five leaf indexes,viz.epidermal cell density(ED),stomatal density(SD),stomatal index(SI),leaf vein density(VD) and carbon isotopic ratio(δ13C),were analyzed in laboratory.The results show that there are significant or even very significant linear correlations between the five indexes and altitude,of which SD,SI and VD exhibit a negative correlation with altitude,while ED and δ13C exhibit a positive correlation with altitude.Such a correlation assemblage is quite different from the situation in the low-altitude humid environment.Generally,only an assemblage of positive correlations can be observed between the indexes(viz.SD,SI and δ13C,etc.) and the altitude in the low-altitude humid environment,which were caused mainly by the plants' responses to the change of atmospheric CO2 concentration(Cα).However,an assemblage of the negative and positive correlations found here may be attributed mainly to the plants' responses to the change of physiological drought caused by change of low temperature,and here it is preliminarily called the inland high-altitude pattern of plant leaf variations.     

Field scale impacts of spatially correlated relative permeability in heterogeneous multiphase systems

Two-dimensional numerical simulations of two-phase (DNAPL-water) flow in spatially correlated random fields demonstrate the influence of nonwetting phase (NWP) relative permeability–saturation (k_r,N–S_W) relationships correlated to porous media intrinsic permeability (k). Both the volume of porous media invaded by the NWP and the length of time during which the NWP is migrating are under predicted if k_r,N–k correlation is not accounted for in the model formulation. Not accounting for the k_r,N–k correlation resulted in under predicting the volume of porous media invaded by up to approximately 10%, which is likely not significant for many practical applications. However, not accounting for the k_r,N–k correlation resulted in under predicting field scale migration times by up to a factor of 4, which is likely significant in that the migration times are on the order of years to several decades for the DNAPL (1,2-DCE) considered in this study. The under prediction of migration times was greater for lower permeability aquifers.     

Simulation of irregular waves in an offshore wind farm with a spectral wave model

A numerical study of irregular waves in the Norwegian continental shelf wind farm (HAVSUL-II) was conducted using 3rd generation spectral wave models. The study was composed of two parts: the study of the effect of a single windmill monopile in the local incoming wave field using an empirical JONSWAP spectrum, and a wave hindcast study in the wind farm area using realistic incoming wave spectra obtained from large scale simulations for the 1991-1992 winter period. In the single windmill monopile study the SWAN wave model was used, while the hindcast study was conducted by successively nesting from a coarse grid using the WAM model up to a high-resolution (56 m) grid covering 26.2 km² of the HAVSUL-II windmill farm using the SWAN model. The effect of a single monopile on incident waves with realistic spectra was also studied. In the single windmill study the monopile was represented as a closed circular obstacle and in the hindcast study it was represented as a dry grid point. The results showed that the single windmill monopile creates a shadow zone in the down wave region with lower significant wave height (H_s) values and a slight increase of H_s in the up wave region. The effects of the windmill monopile on the wave field were found to be dependent on the directional distribution of the incoming wave spectrum and also on the wave diffraction and reflection. The hindcast study showed that the group of windmill monopiles may contribute to the reduction of the wave energy inside the offshore wind farm and that once the waves enter into the offshore wind farm they experience modifications due to the presence of the windmill monopiles, which cause a blocking of the wave energy propagation resulting in an altered distribution of the H_s field.     

Dimensional analysis of structures with translating and rocking foundations under near-fault ground motions

This paper evaluates the inertial soil–structure interaction (SSI) effects on linear and bilinear structures supported on foundation that is able to translate and rock when subject to near-fault ground motions. Through rigorous dimensional analysis, the peak structural responses (e.g. structural drift and total acceleration) of the soil–foundation–structure interacting (SFSI) systems are characterized by a set of dimensionless Π-parameters, which can decisively describe the interactive behavior of SFSI systems. By comparing the normalized structural responses of various structure–foundation systems with their fixed-base counterparts, the study reveals that SSI effects highly depend on the structure-to-pulse frequency ratio, Π_ω, the foundation-to-structure stiffness ratio, Π_k, damping coefficient of foundation impedance, Π_c, the foundation rocking, and the development of nonlinearity in structures. For linear structures, the SSI effects are insignificant when the structure-to-pulse frequency ratio (Π_ω) is smaller than 1.5 and can amplify the structural responses when Π_ω is higher than 1.5. Foundation rocking can shift and enlarge the response amplification zone of SSI. For nonlinear structures, SSI tends to reduce the structural responses for Π_ω<3 while can increase the ductility demands for Π_ω≥3. The bilinear structures may experience more significant SSI effects than linear structures in certain frequency ranges. The numerical simulations on ten real building cases exhibiting significant rocking and a detailed case study on a nine-story frame structure demonstrate the applicability of dimensional analysis results to predict the SSI effects on realistic building structures. The study demonstrates that the dimensional analysis provides a concise and systematic way of evaluating SSI effects.     

Effects of a fully submerged boulder within a boulder array on the mean and turbulent flow fields: Implications to bedload transport

The objective of this coupled experimental and numerical study is to provide insight into the mean and turbulent flow fields within an array of fully submerged, isolated, immobile boulders. Our study showed that the velocity defect law performed well for describing the mean flow around the boulder within the array. A prerequisite, however, was to accurately estimate the spatial variability of u* around the boulder, which was achieved via the boundary characteristics method. The u* exhibited considerable spatial variability within the array and form roughness was shown to be up to 2 times larger than the skin roughness in the boulder near-wake region. Because the boulders bear a significant amount of the flow shear, the available bed shear stress for entrainment of the mobile sediment, ?? _ols , near the boulders was roughly 50% lower than the ambient ?? _ols . The ?? _ols variability induced by the boulders could lead to a threefold overestimation of the sediment transport rate.