深海适冷菌SM9913产生的低温蛋白酶

从1855m深的深海泥样中分离纯化得到200多株分泌蛋白酶的适冷菌，其中3株产低温蛋白酶，本文对其中一株Pseudomonas sp.SM9913(P.SM9913)生长的适冷性和它产生的蛋白酶的适低温特性进行了研究。该菌株能够在0℃正常生长，其最适生长温度为15℃，最高生长温度为35℃。为一株适冷菌。该菌株所产蛋白酶的比合成速率在10℃时最高，催化酪蛋白水解的最适温度为35℃，在0℃仍具有3％的酶活力。最适pH为8．0。该蛋白酶的热稳定性很低，在40℃保温10min即丧失85％的活力，40℃时的半衰期为6min，为一典型的低温酶。抑制剂试验表明，该蛋白酶为金属蛋白酶。     

南极低温降解菌的筛选、鉴定与低温降解适应性分析

以南极海洋细菌为研究对象,采用2216E和MMC液体培养基结合的方法,从菌种库里筛选南极低温降解菌,进行石油烃降解率测定、表型特征确定和16SrRNA分子鉴定,构建系统发育树,并对南极低温降解菌NJ49的低温降解适应性进行了初步研究。结果表明,3株南极海洋细菌NJ41、NJ49和NJ289可以在以柴油为惟一碳源和能源的培养基中生长,被视为南极低温降解菌;16SrRNA分子鉴定结果表明,南极低温降解菌NJ41、NJ49和NJ289分别属于Planococcus、Shewanella和Pseudoalteromonas属;NJ49通过改变脂肪酸组分的膜修饰方式适应低温降解。     

高压技术在深海沉积物兼性嗜压菌的筛选和鉴定中的应用

通过自行改进的高压培养罐及高压设备,对深海沉积物进行可培养微生物的筛选,获得6株具有较强耐受压力的细菌.16SrDNA的测序结果表明这些细菌分别属于6个不同的菌属.压力生长试验的结果表明这6株细菌在40MPa的条件下仍然具有较强的生长能力,属于兼性嗜压菌.对不同压力下生长的细菌做显微镜检,结果显示,除了一株芽孢杆菌在40MPa下的菌体形态发生了明显的变化外,其它5株细菌在压力条件下的菌体的分裂均没有受到明显的影响.     

Molecular phylogenetic analysis of sulfate-reducing bacteria from deep sediment layers of the tropical West Pacific warm pool

1IntroductionThe tropical West Pacific warm pool(TWP-WP),which spans an area roughly between10°Nto10°S of the equator from Indonesia to the dateline,has the world’s warmest sea surface temperature ofbeing greater than29℃.With the increase of recog-niz…     

极地产适冷脂肪酶菌株的酶学性质研究

从南北极环境样品中分离到7株产脂肪酶的细菌,经16SrDNA序列分析表明,这些细菌分别属于假交替单胞菌属（Pseudoalteromonas）和嗜冷杆菌属（Psychrobacter）．采用p-NPP法对这7株细菌所产的脂肪酶进行酶学性质研究,结果显示这些酶的最适作用温度在30～40cC、最适作用pH值在7—8之间,在低温下能保持较高的剩余活力,对热敏感,属于适冷脂肪酶．其中假交替单胞菌（Psychrobacter sp．7342）所产脂肪酶具有低温下酶的剩余活力高、有效作用温度和pH范围广、热稳定性较好及对多种金属离子抗性强等特点．该菌株能利用多种单一氮源和碳源产酶,最适产酶温度为25℃．在此基础上进行正交实验分析得到了该菌株的最佳发酵条件为：蛋白胨和淀粉含量各为1．33％,酵母膏含量为0．3％,温度为25℃．     

Contribution of trimethylamine N-oxide on the growth and pressure tolerance of deep-sea bacteria

Trimethylamine N-oxide(TMAO) is widely dispersed in marine environments and plays an important role in the biogeochemical cycle of nitrogen. Diverse marine bacteria utilize TMAO as carbon and nitrogen sources or as electron acceptor in anaerobic respiration. Alteration of respiratory component according to the pressure is a common trait of deep-sea bacteria. Deep-sea bacteria from dif ferent genera harbor high hydrostatic pressure(HHP) inducible TMAO reductases that are assumed to be constitutively expressed in the deep-sea piezosphere and facilitating quick reaction to TMAO released from ?sh which is a potential nutrient for bacterial growth. However, whether deep-sea bacteria universally employ this strategy remains unknown. In this study, 237 bacterial strains affliated to 23 genera of Proteobacteria,Bacteroidetes, Firmicutes and Actinobacteria were isolated from seawater, sediment or amphipods collected at dif ferent depths. The pressure tolerance and the utilization of TMAO were examined in 74 strains. The results demonstrated no apparent correlation between the depth where the bacteria inhabit and their pressure tolerance, regarding to our samples. Several deep-sea strains from the genera of Alteromonas, Halomonas,Marinobacter, Photobacterium, and Vibrio showed capacity of TMAO utilization, but none of the isolated Acinebacter, Bacillus, Brevundimonas, Muricauda, Novosphingobium, Rheinheimera, Sphingobium and Stenotrophomonas did, indicating the utilization of TMAO is a species-speci?c feature. Furthermore, we noticed that the ability of TMAO utilization varied among strains of the same species. TMAO has greater impact on the growth of deep-sea isolates of Vibrio neocaledonicus than shallow-water isolates. Taken together, the results describe for the ?rst time the TMAO utilization in deep-sea bacterial strains, and expand our understanding of the physiological characteristic of marine bacteria.     

海洋生物蛋白的酶解及酶解产物的抗氧化活性

应用4种蛋白酶：实验室保藏菌株Bacillus sp．SM98011和Bacillus sp．SM97010所产的中性蛋白酶SM98011和SM97010以及购自诺维信公司的碱性蛋白酶和风味蛋白酶分别酶解鲨鱼、牡蛎、扇贝和毛虾,分析了酶解液中蛋白质含量、氨基酸组成及肽的含量,并测定了酶解液的抗氧化能力。结果表明,酶解液中必需氨基酸含量丰富、均衡,营养价值较高;SM98011蛋白酶、SM97010蛋白酶和碱性蛋白酶的酶解液中肽的比例较高;而风味蛋白酶的酶解产物主要以游离的风味氨基酸为主,肽的含量较低。SM97010和SM98011蛋白酶的酶解液具有较高的抗氧化能力,预示在功能食品开发方面具有较好的前景。     

Isolation and phylogenetic assignation of actinomycetes in the marine sediments from the Arctic Ocean

Actinomycetes in five marine sediments collected from the Arctic Ocean at depths of 43 to 3 050 m were cultivated using a variety of media. A total of 61 actinomycete colonies with substrate mycelia only were observed, and no colonies with aerial mycelia were observed under aerobic conditions at 15 ℃. From these colonies, 28 were selected to represent different morphological types.Denaturing gradient gel electrophoresis (DGGE) was used to check the purity of isolates and select representatives for subsequent sequencing. Phylogentic analyses based on nearly full-length 16S ribosomal RNA gene (rDNA) sequences indicated that the actinomycetes isolated were accommodated within genus Rhodococcus of family Nocardiaceae, genus Dietzia of family Dietziaceae,genera Janibacter and Terrabacter of family Instrasporangiaceae and genera Kocuria and Arthrobacter of family Micrococcaceae. One of the strains (P27-24) from the deep-sea sediment at depth of 3 050 m was found to be identical in 16S rDNA sequence(1474/1474)with the radiation-resistant Kocuria rosea ATCC 187T isolated from air. More than halfofthe isolates showed the similarities ranging from 99.5% to 99.9% in 16S rDNA sequence to dibenzofran-degrading, butyl 2-ethylhexanoate-hydrolysising and nitrile-metabolizing actinomycetes. All the strains isolated were psychrotolerant bacteria and grew better on the media prepared with natural seawater than on the media prepared with deionized water. Three of them (Dietzia sp. P27-10, Rhodococcus sp. S11-3 and Rhodococcus sp.P11-5)had an obligate growth requirement for salt, confirming that these strains are indigenous marine actinomycetes.     

北极细菌Pseudoalteromonas sp.A2对H2O2胁迫的转录组分析

海水中的高溶解氧浓度、低温和UV辐射导致了氧胁迫是北极海洋细菌面临的主要胁迫因素之一。本文对北极细菌Pseudoalteromonas sp.A2对H₂O₂导致的氧胁迫的应答特征进行了转录组测序和基因差异表达的比较分析,以期发现与氧胁迫相关的关键功能基因。研究表明,与对照组相比,1 mmol/L的H₂O₂可导致菌株A2转录组的很大变化,包括109个基因的显著上调与174个基因的显著下调。COG分析表明,在功能已知的基因中,与转录后修饰、蛋白质转换和分子伴侣相关的基因大部分显著上调,而与氨基酸运输和代谢等相关基因则大部分显著下调。值得指出的是,有18个与鞭毛相关的基因和4个与热激蛋白相关的基因显著上调;同时,有9个与细胞色素和细胞色素氧化酶相关的基因和5个与TonB依赖受体相关的基因显著下调。在GO分析表明具有抗氧化活性的18个基因中,只有1个基因的表达显著上调,而有2个显著下调。简言之,RNA-Seq表明,除了传统的抗氧化基因和应激蛋白外,鞭毛相关基因和功能未知基因在菌株Pseudoalteromonas sp.A2的氧胁迫适应性中起着重要作用。该转录组分析和氧胁迫相关基因的发现有助于了解北极细菌的氧胁迫适应机制。     

深海生物原位实验与生态监测研究进展

深海在黑暗、高静水压、低温(黑烟囱等热液系统除外)和寡营养的极端环境下形成了特殊的生境。对深海生物/微生物的研究,不仅可以揭示各种深海生物的生理代谢特性和动态变化规律,而且有助于深海生物资源的开发利用,特别是深海微生物碳循环机制的相关研究可为全球实现碳中和目标提供新的路线图。研究深海生物的首要条件是获得大量保持原位特性的样本,然而传统深海采样手段的局限可能导致深海相关研究结果无法反映深海环境下真实的生命过程,亟需发展满足深海生物原位研究的采样方法和生态监测技术。本文对深海生物研究现状,相关科学问题和原位组学研究进展,以及原位生态监测装备研发和应用进行综述,并对深海原位生物实验室进行了展望。     

印度洋深海沉积物样品纯培养细菌的分离鉴定

为探索印度洋深海沉积物中纯培养细菌的多样性,本文对采自印度洋12个沉积物样品进行细菌纯培养分离,共获得343株细菌.所有细菌采用16S?rRNA基因进行比对分析,鉴定为4个门:厚壁菌门(Firmicutes)、变形菌门(Proteobacteria)、放线菌门(Actinobacteria)和拟杆菌门(Bacteroi...     

深海化能生态系统双壳纲共生体系互作机制研究进展

双壳纲贝类在深海特殊生境——热液、冷泉及有机沉落生态系统中分布广泛,并且在其体内常含有化能共生细菌为贝类提供营养物质.双壳纲贝类与化能共生菌形成的共生体系对于其适应深海还原性生境至关重要.近40a来随着海洋科考力度加大,深海化能生境的神秘面纱被逐渐揭开,越来越多的深海物种被发现,双壳纲贝类无疑是这些化能生态系统中的优势...     

南极菲尔德斯半岛可培养土壤微生物多样性及理化性质鉴定

为了探索南极可培养土壤微生物的多样性,本研究对中国第31次南极科学考察采集自南极菲尔德斯半岛的5份土壤样品进行了细菌、真菌的分离培养。选择形态差异较大的细菌和真菌进行了16S rDNA和ITS鉴定及系统发育分析。最终共鉴定得到20个属的33株细菌和6个属的8株真菌,其中8株细菌,10株真菌序列相似性较低,可能是新种。该结果表明南极菲尔德斯半岛地区具有丰富的微生物多样性,其中假单胞菌属的细菌居多。对分离得到的细菌和真菌分别进行理化性质和胞外酶活性鉴定,实验结果显示,分离获得的细菌和真菌绝大多数可产生水解酶类并同化多种碳源。初步认定这些微生物在参与南极物质代谢、适应南极极端环境方面发挥作用。本研究丰富了对南极菲尔德斯半岛可培养土壤微生物多样性的认识,并筛选获得了一些产低温酶特性的菌株,这为极地微生物资源的利用研究奠定了基础。     

深海沉积物宏基因组文库构建及淀粉酶筛选

深海环境通常具有高盐,高压,高/低温,无光照等特点,使得海洋微生物存在一套独特的生理代谢机制和分子细胞结构,然而迄今绝大部分深海微生物不能在实验室条件下被分离培养,深海微生物资源开发遇到很大挑战。本研究通过不依赖培养的方法研究海洋微生物的基因资源,构建了南海深海沉积物fosmid宏基因组文库,共获得约39 600个克隆,插入片段范围在24~45 kb之间,平均插入片段大小为33 kb,克隆片段的总库容达到1 320 Mb。通过功能筛选获得3个具有淀粉酶活性的克隆子,选取其中最适温度较低的amy7作为进一步研究对象。构建amy7插入片段的重组质粒文库,获得一个同样有淀粉酶活性的克隆子amy7-6。经测序,克隆子amy7-6含有3 291 bp插入片段,序列比对分析后发现其中一个大小为1 920 bp的ORF,其编码的蛋白质序列(AmyS)与各种来源的糖苷酶有着较高的相似性。     

Epsilon-变形菌趋化信号通路中偶联蛋白CheV与趋化受体蛋白的CZB结构域的功能研究

细菌通过趋化系统感知和响应外界环境变化并进行趋利避害, 因此很多细菌进化出了非常复杂多样的趋化系统以适应不同的生态位。Epsilon-变形菌广泛存在于自然界中, 能适应不同的生态环境, 特别是深海Epsilon-变形菌能适应深海热液口和冷泉等极端环境, 其趋化系统可能有其独特之处。通过BlastP和MIST数据库分析, 我们发现大部分深海Epsilon-变形菌拥有F3类型趋化系统且具有单拷贝的双功能域融合蛋白CheV。此外, 一种特殊结构域CZB (C-terminal Zinc-Binding) 存在于深海Epsilon-变形菌的趋化受体蛋白中, 而且在部分深海Epsilon-变形菌的趋化受体中还发现并鉴定了一种新的结构域CZB-like结构域。文章以Epsilon-变形菌的模式菌株空肠弯曲杆菌(Campylobacter jejuni 81-176)为研究对象, 用细菌双杂交试验证实了CheV能与所有含MA结构域的趋化受体相互作用。用电感耦合等离子体质谱(ICP-Mass)技术证实了CZB-like结构域不能结合Zn离子, 但细菌双杂交试验证实它能介导趋化受体Tlp9与CheV的互作。     

Production and characterization of an extracellular polysaccharide of antarctic marine bacteria Pseudoalteromonas sp. S-15-13

1Introduction Antarctica is often viewed as one of earth s lastgreat frontiers. Low temperature, high gradients insalinity, and strong ultraviolet radiation combinedwith lowlight conditions provide inhospitable condi-tions for life. Surviving in these ext…     

西南印度洋深海热液区铠甲虾初探

简述了深海热液区铠甲虾的分类研究现状,整理出铠甲虾总科下属科的形态分类检索表,并对2008年10月-2009年2月中国大洋科考第20航次在西南印度洋深海热液区获得的铠甲虾样品进行详细的形态描述和分类,初步鉴定为5种,隶属于2科5属,分别是:劣柱虾科(Chirostylidae)的折尾虾(Uroptychus sp.),...     

The response of abyssal organisms to low pH conditions during a series of CO2-release experiments simulating deep-sea carbon sequestration

The effects of low-pH, high-pCO₂ conditions on deep-sea organisms were examined during four deep-sea CO₂ release experiments simulating deep-ocean C sequestration by the direct injection of CO₂ into the deep sea. We examined the survival of common deep-sea, benthic organisms (microbes; macrofauna, dominated by Polychaeta, Nematoda, Crustacea, Mollusca; megafauna, Echinodermata, Mollusca, Pisces) exposed to low-pH waters emanating as a dissolution plume from pools of liquid carbon dioxide released on the seabed during four abyssal CO₂-release experiments. Microbial abundance in deep-sea sediments was unchanged in one experiment, but increased under environmental hypercapnia during another, where the microbial assemblage may have benefited indirectly from the negative impact of low-pH conditions on other taxa. Lower abyssal metazoans exhibited low survival rates near CO₂ pools. No urchins or holothurians survived during 30–42 days of exposure to episodic, but severe environmental hypercapnia during one experiment (E1; pH reduced by as much as ca. 1.4 units). These large pH reductions also caused 75% mortality for the deep-sea amphipod, Haploops lodo, near CO₂ pools. Survival under smaller pH reductions (ΔpH<0.4 units) in other experiments (E2, E3, E5) was higher for all taxa, including echinoderms. Gastropods, cephalopods, and fish were more tolerant than most other taxa. The gastropod Retimohnia sp. and octopus Benthoctopus sp. survived exposure to pH reductions that episodically reached −0.3 pH units. Ninety percent of abyssal zoarcids (Pachycara bulbiceps) survived exposure to pH changes reaching ca. −0.3 pH units during 30–42 day-long experiments.     

国产深海准实时传输潜标系统设计

基于海洋环境安全保障、海洋环境预报和海洋科学研究的需要,开展国产深海准实时传输潜标系统的设计,重点进行锚泊系统水动力分析、观测设备工作同步性、准实时通讯系统安全可靠和系统低功耗等整体技术设计;开展轻型感应耦合传输缆制作、大深度感应耦合传输和智能收放通讯等数据实时通讯技术的研究;进行适用于准实时传输潜标系统的多种类国产设备的稳定性和可靠性优化、规模化集成和系统化的应用示范,形成半潜升降式准实时通讯潜标与浮子式准实时通讯潜标各1套。所设计的准实时传输潜标系统集成了1台抗污染CTD、19台感应耦合CTD、8台感应耦合T、4台感应耦合传输的ADCP、2台单点海流计和6台感应耦合数据传输仪,并配有2套声学释放器;潜标系统本体设计含有3个水下流线型浮体、1套通讯浮子、1套准实时卫星通讯装置（半潜式水下绞车或海面浮子）和1套锚泊缆系,可实现深达2 000 mm的剖面温盐深和海流等海洋要素的高频率、多要素、多层次的长期连续观测和数据准实时传输,以便对科学问题解决和海洋环境安全保障等提供及时的数据支撑。