Dynamic simulation of littoral zone habitats in lower Chesapeake Bay. I. Ecosystem characterization related to model development

The fringing environments of lower Chesapeake Bay include sandy shoals, seagrass meadows, intertidal mud flats, and marshes. A characterization of a fringing ecosystem was conducted to provide initialization and calibration data for the development of a simulation model. The model simulates primary production and material exchange in the littoral zone of lower Chesapeake Bay. Carbon (C) and nitrogen (N) properties of water and sediments from sand, seagrass, intertidal silt-mud, and intertidal marsh habitats of the Goodwin Islands (located within the Chesapeake Bay National Estuarine Research Reserve in Virginia, CBNERR-VA) were determined seasonally. Spatial and temporal differences in sediment microalgal biomass among the habitats were assessed along with annual variations in the distribution and abundance ofZostera marina L. andSpartina alterniflora Loisel. Phytoplankton biomass displayed some seasonality related to riverine discharge, but sediment microalgal biomass did not vary spatially or seasonally. Macrophytes in both subtidal and intertidal habitats exhibited seasonal biomass patterns that were consistent with other Atlantic estuarine ecosystems. Marsh sediment organic carbon and inorganic nitrogen differed significantly from that of the sand, seagrass, and silt habitats. The only biogeochemical variable that exhibited seasonality was low marsh NH₄ ⁺. The subtidal sediments were consistent temporally in their carbon and nitrogen content despite seasonal changes in seagrass abundance. Eelgrass has a comparatively low C:N ratio and is a potential N sink for the ecosystem. Changes in the composition or size of the vegetated habitats could have a dramatic influence over resource partitioning within the ecosystem. A spatial database (or geographic information system, GIS) of the Goodwin Islands site has been initiated to track long-term spatial habitat features and integrate model output and field data. This ecosystem characterization was conducted as part of efforts to link field data, geographic information, and the dynamic simulation of multiple habitats. The goal of these efforts is to examine ecological structure, function, and change in fringing environments of lower Chesapeake Bay.     

Spatial differences in macroinvertebrate communities in intertidal seagrass habitats and unvegetated sediment in three New Zealand estuaries

This study investigated macroinvertebrate community composition in seagrass beds at a range of spatial scales, with an emphasis on the transition between vegetated and unvegetated sediment. At four intertidal sites in three New Zealand estuaries (Whangamata, Wharekawa, and Whangapoua Harbours), a large continuous bed of seagrass (Zostera capricorni) was selected with adjacent unvegetated sediment. Macroinvertebrate community composition and biomass, as well as sediment characteristics, were determined at sampling locations 1 and 50 m inside seagrass beds, and 1, 10, and 50 m outside seagrass beds. Analysis of univariate measures of community composition (total abundance, number of species, and diversity) and total biomass indicated significant differences among sites and sampling locations, but contrary to many previous studies these measures were not higher inside than outside the seagrass beds. Multivariate analysis indicated that sites with high seagrass biomass supported a similar community composition. The remaining sampling locations were clustered by site, but there were also significant differences in community composition among sampling locations within a site. There were distinctive communities at the edge of seagrass beds at sites with high seagrass biomass, and evidence that the effects of seagrass beds may extend into the unvegetated sediment. At the low seagrass biomass site there was no evidence of any edge effects, although community composition differed inside and outside the bed. Differences in community composition were driven primarily by small changes in the relative abundance of the dominant taxa. At high seagrass biomass sites the absence of deep-burrowing polychaetes and low numbers of bivalves suggests that one possible mechanism underlying the observed variation in community composition was inhibition by the dense root-rhizome mat. The results of this study emphasize the need to consider the linkages between habitats in heterogeneous estuarine landscapes and how those linkages vary among sites, if the structure and functioning of macroinvertebrate communities in seagrass habitats are to be understood.     

Lessons learned: The effects of nutrient enrichment on the support of nekton by seagrass and salt marsh ecosystems

Coastal ecosystems such as eelgrass beds and salt marshes have always been valued for their high productivity and rich bounty of fish and shellfish. High plant productivity, complex physical structure, and suitable environmental characteristics combine to create areas of high production of important recreational and commercial species. If we are to successfully manage and restore these ecosystems, it is important to understand the mechanisms by which support of nekton may be affected by nutrient enrichment. A review of the literature suggests that there are some similarities and differences in the effects of nutrient enrichment on the support of nekton by seagrass and salt marsh ecosystems. Nutrient enrichment may compromise the ability of these habitats to support fish and invertebrates before the habitat itself is gone. In both ecosystems, alteration of characteristics within the ecosystem (for example, stem density in seagrass and food webs in marshes) affect the support of nekton, even though the basic ecosystem is still clearly extant. Because of differences in natural ecosystem characteristics, loss of ecosystem function does not occur through the same mechanisms. In seagrass systems, physical structure is usually lost first, followed by alteration of food webs and finally changes in dissolved oxygen. In salt marsh systems, loss of dissolved oxygen may occur early in the process, followed by food web alterations and eventually changes in the physical structure may occur. For both seagrass and salt marsh ecosystems, the mechanisms suggested to operate at the ecosystem-level are often based on relatively small-scale plot experiments that have been conducted in only a few locations. A better understanding of how these ecosystems function across broad geographic regions will be needed to ensure functioning coastal ecosystems.     

Patterns of seagrass community response to local shoreline development

Three quarters of the global human population will live in coastal areas in the coming decades and will continue to develop these areas as population density increases. Anthropogenic stressors from this coastal development may lead to fragmented habitats, altered food webs, changes in sediment characteristics, and loss of near-shore vegetated habitats. Seagrass systems are important vegetated estuarine habitats that are vulnerable to anthropogenic stressors, but provide valuable ecosystem functions. Key to maintaining these habitats that filter water, stabilize sediments, and provide refuge to juvenile animals is an understanding of the impacts of local coastal development. To assess development impacts in seagrass communities, we surveyed 20 seagrass beds in lower Chesapeake Bay, VA. We sampled primary producers, consumers, water quality, and sediment characteristics in seagrass beds, and characterized development along the adjacent shoreline using land cover data. Overall, we could not detect effects of local coastal development on these seagrass communities. Seagrass biomass varied only between sites, and was positively correlated with sediment organic matter. Epiphytic algal biomass and epibiont (epifauna and epiphyte) community composition varied between western and eastern regions of the bay. But, neither eelgrass (Zostera marina) leaf nitrogen (a proxy for integrated nitrogen loading), crustacean grazer biomass, epifaunal predator abundance, nor fish and crab abundance differed significantly among sites or regions. Overall, factors operating on different scales appear to drive primary producers, seagrass-associated faunal communities, and sediment properties in these important submerged vegetated habitats in lower Chesapeake Bay.     

Sedimentary Environment Influences Ecosystem Response to Nutrient Enrichment

As coastal catchment land use intensifies, estuaries receive increased nutrient and sediment loads, resulting in habitats that are dominated by muddy organic-rich sediments. Increased mud (i.e. silt-clay (particles <?63 μm)) content has been associated with negative effects on soft sediment biodiversity and ecosystem functioning, but the simultaneous impact of nutrient enrichment on ecosystem response is unclear. Nutrient recycling and denitrification in estuarine soft sediments represent important ecosystem functions regenerating nutrients for primary producers and regulating the ability to remove excess terrestrially derived nitrogen. To test the effect of sedimentary environment on ecosystem resilience to nutrient perturbation, we experimentally enriched sediments with slow release fertiliser across an intertidal sedimentary gradient (0–24% mud content). The enrichment successfully elevated pore water ammonium concentrations (median 36?×?control) to levels representative of enriched estuaries. Findings show that the sedimentary environment can influence ecosystem function response to nutrient stress. In particular, denitrification enzyme activity was suppressed by nutrient enrichment, but the effect was greater as sediment mud content increased. Furthermore, compared with sandy sediments, sediments with high mud content may restrict nutrient processing (release, uptake or transformation of organic nutrients by the benthos) facilitating ecosystem shifts toward eutrophication. These results show the value of investigating the impacts of stressors in different environmental settings and demonstrate that land use practices that increase the proportion of muddy habitats in estuaries may reduce denitrification which in turn may reduce ecosystem resilience to eutrophication.     

Sediment grain size effect on benthic microalgal biomass in shallow aquatic ecosystems

Benthic microalgal biomass is an important fraction of the primary producer community in shallow water ecosystems, and the factors controlling benthic microalgal biomass are complex. One possible controlling factor is sediment grain-size distribution. Benthic microalgal biomass was sampled in sediments collected from two sets of North Carolina estuaries Massachusetts and Cape Cod bays, and Manukau Harbour in New Zealand. Comparisons of benthic microalgal biomass and sediment grain-size distributions in these coastal and estuarine ecosystems frequently showed a negative relationship between the proportion of fine-grained sediments and benthic microalgal biomass measured as chlorophylla. The highest sedimentary chlorophylla levels generally occurred in sediments with lower percentages of fine particles (diameter <125 mm). A negative relationship between the proportion of fine sediments and benthic microalgal biomass suggests anthropogenic loadings of fine sediment may reduce the biological productivity of shallow-water ecosystems.     

Variability of dissolved organic carbon in sediments of a seagrass bed and an unvegetated area within an estuary in Southern Texas

Pore-water dissolved organic carbon (PWDOC) concentrations were examined in vegetated and bare sediments of aHalodule wrightii seagrass bed, and in a mud bottom sediment of a southern Texas estuary. Temporal variability was examined at diel (dawn and noon) and bimonthly time scales. Distribution patterns of PWDOC were compared with physical, chemical, and biological factors thought to exert control on PWDOC. Concentration of PWDOC, bacterial production, and resultant PWDOC turnover times displayed statistically significant spatial and temporal variability. Concentration of PWDOC ranged from 14 mg C 1^?1 to 107 mg C 1^?1 of pore water, or 9–71 μg C cm^?3 wet sediment. PWDOC was more variable and was approximately 5 times higher than DOC concentrations in the water column. Low PWDOC concentrations (mean = 14.6 μg C cm^?3) and high bacterial production rates (mean = 1.92 μg C cm^?3 h^?1) were observed at the mud station, whereas PWDOC concentrations were high (mean = 24.6 μg C cm^?3) and bacterial production rates were low (mean = 0.43 μg C cm^?3 h^?1) at the bare station. PWDOC turnover times (T_t), assuming 50% bacterial growth efficiency (1–840 h) were shortest at the mud station (mean=13 h) and longest at the bare station (mean=180 h). In the overlying water column, T_t values were longer, ranging from 1,000–10,000 h. PWDOC concentrations were 25% higher in vegetated sediments than in neighboring bare sediments. This difference was probably due to inputs of labile photosynthetic excretia, since bacterial production rates in vegetated sediments displayed significant diel variability and were 4 times greater than that of bare sediments. Based upon the entire data set, PWDOC was significantly related to macrofaunal biomass, sediment POC, sediment C:N ratios, and oxygen metabolism, but was significantly correlated only to the latter two variables in stepwise multiple regression. Our findings suggest that organism activities and detrital quality are the major determinants controlling variability in PWDOC.     

Production and nutrient dynamics of aSyringodium filiforme Kütz. Seagrass bed in Indian River Lagoon,Florida

A year-long analysis of the characteristics of the seagrassSyringodium filiforme and the associated dynamics of the nutrient pool in the sediment pore water was done to assess co-variation. Changes in seagrass growth rate and standing stock throughout the year were accompanied by seasonal changes in the nutrient pools. The link between plant production and morphometrics and the sediment nutrient pool was found to be predominantly physiological, with the plant balancing the ability to photosynthesize with the nutrients needed for maintaining production. Measurements of whole plant growth for this seagrass, rather than the more typical leaf growth measurements, show that the production of new shoots and rhizome elongation for these plants represents as substantial amount of growth that usually goes unmeasured. Further, these whole plant growth measures demonstrate the rapid lateral rhizome spread of this species, exceeding one meter per plant per year. The primary cause of seasonal variation in the yearly seagrass cycle was investigated. Correlation analysis supported the hypothesis that the major factor controlling seasonal variation in this seagrass was light. During the peak growing season, however, growth was not regulated by light but by nitrogen. Depletion of the sediment ammonium pool and reduction in pore water ammonium relative to adsorbed ammonium, as well as changes in N content of seagrass leaves, support our hypothesis of peak growing season nitrogen limitation. Our results forSyringodium filiforme in terrigenous sediments are in contrast to our recent findings of phosphorus limitation in this same species occurring in carbonate sediments.     

Seagrass patches and landscapes: The influence of wind-wave dynamics and hierarchical arrangements of spatial structure on macrofaunal seagrass communities

The spatial arrangement of seagrass beds varies from scales of centimeters to meters (rhizomes, shoot groups), meters to tens of meters (patches), to tens of meters to kilometers (seagrass landscapes). In this study we examine the role of patch scale (patch size, seagrass % cover, seagrass biomass), landscape scale (fractal geometry, patch isolation) and wave exposure (mean wind velocity and exceedance) variables in influencing benthic community composition in seagrass beds at three intertidal sites in northern New Zealand (two sites in Manukau Harbour and one site in Whangapoua Harbour). Analysis of univariate community measures (numbers of individuals and species, species richness, diversity and evenness) and multivariate analyses indicated that there were significant differences in community composition inside and outside of seagrass patches at each of the three sites. Partialling out the spatial and temporal components of the ecological variation indicated that seagrass patch variables explained only 3–4% of the patch scale variation in benthic community composition at each of the sites. The temporal component was more important, explaining 12–14% of the variation. The unexplained variation was high (about 75%) at all three sites, indicating that other factors were influencing variation in community composition at the scale of the patches, or that there was a large amount of stochastic variation. Landscape and wave exposure variables explained 62.5% of the variation in the species abundance data, and the unexplained variation at the landscape level was correspondingly low (12%). Canonical correspondence analysis produced an ordination that suggests that, while mean wind velocity and exceedance were important in explaining the differences between the communities in the two harbours, spatial patterning of the habitat, primarily fractal dimension, and secondarily patch isolation (or some factors that were similarly correlated), were important in contributing to variability in community composition at the two sites in Manukau Harbour. This study suggests that spatial patterning of seagrass habitat at landscape scales, independent of the patch scale characteristics of the seagrass beds, can affect benthic community composition. Community composition inside and outside seagrass habitats involves responses to seagrass bed structure at a series of hierarchical levels, and we need to consider more than one spatial scale if we are to understand community dynamics in seagrass habitats.     

Ecosystem Engineering Effects of <Emphasis Type="Italic">Aster tripolium</Emphasis> and <Emphasis Type="Italic">Salicornia procumbens</Emphasis> Salt Marsh on Macrofaunal Community Structure

This paper examines how perennial Aster tripolium and annual Salicornia procumbens salt marshes alter the biomass, density, taxon diversity, and community structure of benthic macrofauna, and also examines the role of elevation, sediment grain size, plant cover, and marsh age. Core samples were collected on a fixed grid on an intertidal flat in the Westerschelde estuary (51.4° N, 4.1° E) over 5 years (2004–2008) of salt marsh development. In unvegetated areas, macrobenthic biomass, density, and taxon diversity were highest when elevation was highest, benthic diatoms were most abundant, and sediment median grain size was smallest. In contrast, in salt marsh areas, macrobenthic biomass and taxon diversity increased with median grain size, while the effects of elevation and diatom abundance on macrobenthic biomass, density, and diversity were not significant. In fine sediments, macrofaunal community structure in the salt marsh was particularly affected; common polychaetes such as Nereis diversicolor, Heteromastus filiformis, and Pygospio elegans had low abundance and oligochaetes had high abundance. Marsh age had a negative influence on the density of macrofauna, and A. tripolium stands had lower macrofaunal densities than the younger S. procumbens stands. There were no significant effects of marsh age, plant cover, and vegetation type on macrobenthic biomass, taxon diversity, and community structure. The results highlight that ecosystem engineering effects of salt marsh plants on macrofauna are conditional. Organic enrichment of the sediment and mechanical hindering of macrofaunal activity by plant roots are proposed as plausible mechanisms for the influence of the salt marsh plants on macrofauna.     

Stress response model for the tropical seagrass<Emphasis Type="Italic">Thalassia testudinum</Emphasis>: The interactions of light,temperature, sedimentation,and geochemistry

Our modeling objective was to better define the relationship between subtropical seagrass and potential water column and sediment stressors (light, organic and particle sedimentation, sediment nutrients, and the porewater sulfide system). The model was developed and optimized for sediments inThalassia testudinum seagrass beds of Lower Laguna Madre, Texas, U.S., and is composed of a plant submodel and a sediment diagenetic submodel. Simulations were developed for a natural stressor (harmful algal bloom,Aureoumbra lagunensis) and an anthropogenic, stressor (dredging event). The observed harmful algal bloom (HAB) was of limited duration and the simulations of that bloom showed no effect of the algal bloom on biomass trends but did suggest that sediment sulfides could inhibit growth if the bloom duration and intensity were greater. To examine this hypothesis we ran a simulation using data collected during a sustained 4-yr bloom in Upper Laguna Madre. Simulations suggested that light attenuation by the HAB could cause a small reduction inT. testudinum biomass, while input of organic matter from the bloom could promote development of a sediment geochemical environment toxic toT. testudinum leading to a major reduction in biomass. A 3-wk dredging event resulted in sedimentation of a layer of rich organic material and reduction of canopy light for a period of months. The simulations suggested that the seagrass could have recovered from the effects of temporary light reduction but residual effects of high sulfides in the sediments would make the region inhospitable for seagrasses for up to 2.5 yr. These modeling exercises illustrate that both natural and anthropogenic stressors can result in seagrass losses by radically altering the sedimentary geochemical environment.     

Small-scale spatial variation of macrobenthic community structure

Examination of small-scale spatial variation in essential to understanding the relationships between environmental factors and benthic community structure in estuaries. A sampling experiment was performed in October 1993 to measure infauna association with sediment composition and salinity gradients in Nueces Bay, Texas, USA. The bay was partitioned into four salinity zones and three sediment types. Higher densities of macrofaua, were found in sediments with greater sand content and in areas with higher salinity. High diversity was also associated with high homogeneous salinity (31–33‰) and greater sand content. Macrofauna biomass and diversity were positively correlated with bottom salinity, porewater salinity, and bottom dissolved inorganic nitrogen (DIN). Furthermore, species dominance shifted along the estuarine gradient.Streblospio benedicti dominated at lower salinity, but,Mediomatsus ambiseta andMulinia lateralis were the dominant species at higher salinity. Statistical analyses revealed significant correlations for sediment characteristics (i.e., increased fine sediments, water content, and total organic carbon) with decreased total abundance and diversity. Increased salinity and DIN were correlated with increased total biomass, diversity, and macrofauma community structure. These physico-chemical variables are regulated by freshwater inflow, so inflow is an important factor influencing macrofauna community structure by indirectly influencing the physico-chemical environment.     

Extreme <Superscript>15</Superscript>N Depletion in Seagrasses

Seagrass beds form an important part of the coastal ecosystem in many parts of the world but are very sensitive to anthropogenic nutrient increases. In the last decades, stable isotopes have been used as tracers of anthropogenic nutrient sources and to distinguish these impacts from natural environmental change, as well as in the identification of food sources in isotopic food web reconstruction. Thus, it is important to establish the extent of natural variations on the stable isotope composition of seagrass, validating their ability to act as both tracers of nutrients and food sources. Around the world, depending on the seagrass species and ecosystem, values of seagrass N normally vary from 0 to 8?‰ δ¹⁵N. In this study, highly unusual seagrass N isotope values were observed on the east coast of Qatar, with significant spatial variation over a scale of a few metres, and with δ¹⁵N values ranging from +2.95 to ?12.39?‰ within a single bay during March 2012. This pattern of variation was consistent over a period of a year although there was a seasonal effect on the seagrass δ¹⁵N values. Seagrass, water column and sediment nutrient profiles were not correlated with seagrass δ¹⁵N values and neither were longer-term indicators of nutrient limitation such as seagrass biomass and height. Sediment δ¹⁵N values were correlated with Halodule uninervis δ¹⁵N values and this, together with the small spatial scale of variation, suggest that localised sediment processes may be responsible for the extreme isotopic values. Consistent differences in sediment to plant ¹⁵N discrimination between seagrass species also suggest that species-specific nutrient uptake mechanisms contribute to the observed δ¹⁵N values. This study reports some of the most extreme, negative δ¹⁵N values ever noted for seagrass (as low as ?12.4?‰) and some of the most highly spatially variable (values varied over 15.4?‰ in a relatively small area of only 655 ha). These results are widely relevant, as they demonstrate the need for adequate spatial and temporal sampling when working with N stable isotopes to identify food sources in food web studies or as tracers of anthropogenic nutrients.     

Environmental texture and geochemistry of the sediments of a subtropical mangrove ecosystem and surrounding areas,Red Sea Coast,Egypt

The textural and geochemical aspects of the sediments of subtropical mangrove ecosystem and surrounding areas have been studied and discussed. Forty sediment samples were collected from different areas of mangrove environment and surrounding areas along the Egyptian Red Sea coast. The sediments of each study areas are characterized by the abundance of sand with minor amounts of mud and gravel. The mean size of the sediments ranged from medium grained to fine grained at the study areas. Cluster analysis showed that the distribution of gravel, sand, and mud fractions is related to bottom facies and type of sediment source. Generally, sand fraction is the main category among the three constituents. Carbonate content recorded minor values in the study areas. The CaCo₃ content of the sediments ranged from 4.7 % at Hamata area to 64.9 % at Erier area. Terrigenous and biogenic components are the factor controlling of the carbonate content of studies sediments. The organic carbon content ranged from 1.10 at Hamata area to 3.1 % at Sharm el-Qibli and Erier areas, which is controlled by particle size of the sediments. Phosphorus content in the different studied localities is related to the sources of phosphorus to the area. Our observations provide evidence that there are no significant differences in environmental texture and geochemistry of the sediments of subtropical mangrove ecosystem and surrounding areas of the Egyptian Red Sea coast.     

Fertilization Changes Seagrass Community Structure but not Blue Carbon Storage: Results from a 30-Year Field Experiment

Seagrass ecosystems are attracting attention as potentially important tools for carbon (C) sequestration, comparable to those terrestrial and aquatic ecosystems already incorporated into climate change mitigation frameworks. Despite the relatively low C stocks in living biomass, the soil organic carbon pools beneath seagrass meadows can be substantial. We tested the relationship between soil C storage and seagrass community biomass, productivity, and species composition by revisiting meadows experimentally altered by 30 years of consistent nutrient fertilization provided by roosting birds. While the benthos beneath experimental perches has maintained dense, Halodule wrightii-dominated communities compared to the sparse Thalassia testudinum-dominated communities at control sites, there were no significant differences in soil organic carbon stocks in the top 15 cm. Although there were differences in δ¹³C of the dominant seagrass species at control and treatment sites, there was no difference in soil δ¹³C between treatments. Averages for soil organic carbon content (2.57?±?0.08 %) and δ¹³C (?12.0?±?0.3?‰) were comparable to global averages for seagrass ecosystems; however, our findings question the relevance of local-scale seagrass species composition or density to soil organic carbon pools in some environmental contexts.     

Dynamic simulation of littoral zone habitats in low Chesapeake Bay. II. Seagrass habitat primary production and water quality relationships

Seagrasses are indicators of ecosystem state because they are sensitive to variations in water composition and clarity resulting from watershed-level impacts. A simulation model designed to studyZostera marina (eelgrass) habitat dynamics in a variable littoral zone environment was used to address the potential ecological responses to eutrophication in lower Chesapeake Bay. The adjacent channel boundary environment is a source of dissolved and particulate materials to the littoral zone. In the simulations, concentrations of key water quality variables in the adjacent estuarine channel boundary were either halved or doubled relative to the base case to investigate light versus nitrogen effects. The role of the seagrass meadow in littoral zone carbon and nitrogen dynamics was evaluated when meadow size was changed in the model. Particulate and dissolved organic carbon accounted for 83% of the submarine light attenuation in the seagrass meadow. In all model runs, the water column concentrations of chlorophylla and dissolved inorganic nitrogen (DIN) were below the habitat criteria proposed as critical to seagrass survival. Eelgrass community production was carefully regulated by the interactive effects of light, nitrogen, and grazing on epiphyte growth. Increased eelgrass coverage in the littoral zone led to a simulated doubling of ecosystem primary production but reduced the fraction of production by planktonic and sediment microalgae. The simulation model presented here demonstrated the importance of material input from the channel in littoral zone biogeochemical dynamics. Submarine ligh regulated primary production more strongly than inorganic nitrogen concentrations in the model. External DIN concentrations influenced seagrass survival indirectly: enrichment stimulated growth of epiphytes and phytoplankton and promoted shading of the seagras leaf. The model was based upon a unimpacted ecosystem and deteriorated water quality negatively influenced primary production greater than the increases triggered by improved condition. Increased material loading to the littoral zone reduced submarine light availability, increased phytoplankton production, lowered ecosystem production, and reduced subtidal vegetated habitat. This simulation model of the estuarine littoral zone model combines hydrodynamics, biogeochemical sources and sinks, and living resources in order to better understand structure, function, and change in aquatic ecosystems.     

A modern analogue of the Pleistocene steppe‐tundra ecosystem in southern Siberia

Steppe‐tundra is considered to have been a dominant ecosystem across northern Eurasia during the Last Glacial Maximum. As the fossil record is insufficient for understanding the ecology of this vanished ecosystem, modern analogues have been sought, especially in Beringia. However, Beringian ecosystems are probably not the best analogues for more southern variants of the full‐glacial steppe‐tundra because they lack many plant and animal species of temperate steppes found in the full‐glacial fossil record from various areas of Europe and Siberia. We present new data on flora, land snails and mammals and characterize the ecology of a close modern analogue of the full‐glacial steppe‐tundra ecosystem in the southeastern Russian Altai Mountains, southern Siberia. The Altaian steppe‐tundra is a landscape mosaic of different habitat types including steppe, mesic and wet grasslands, shrubby tundra, riparian scrub, and patches of open woodland at moister sites. Habitat distribution, species diversity, primary productivity and nutrient content in plant biomass reflect precipitation patterns across a broader area and the topography‐dependent distribution of soil moisture across smaller landscape sections. Plant and snail species considered as glacial relicts occur in most habitats of the Altaian steppe‐tundra, but snails avoid the driest types of steppe. A diverse community of mammals, including many species typical of the full‐glacial ecosystems, also occurs there. Insights from the Altaian steppe‐tundra suggest that the full‐glacial steppe‐tundra was a heterogeneous mosaic of different habitats depending on landscape‐scale moisture gradients. Primary productivity of this habitat mosaic combined with shallow snow cover that facilitated winter grazing was sufficient to sustain rich communities of large herbivores.     

Impact of habitat edges on density and secondary production of seagrass-associated fauna

Species richness and abundance of seagrass-associated fauna are often positively correlated with seagrass biomass and structure complexity of the habitat. We found that while shoot density and plant biomass were greater in interior portions of turtle grass (Thalassia testudinum) beds than at edges, mean faunal density was significantly greater at edges than interior sites during 1994. This pattern was also observed in 1995, although differences were not significant. The four numerically dominant taxonomic groups showed varying degrees of elevated densitities at edges ofT. testudinum beds. Peracarids and polychaetes had significantly greater densities at edges oft. testudinum beds, while both decapods and gastropods showed dramatic temporal variability in density, with reversals in density between edge and interior occurring during the course of the study. This within-habitat variability in abundance may reflect both active accumulation of fauna at edges and settlement shadows for species with pelagic larvae. Active accumulation of highly mobile taxa seeking refuge in seagrass beds may explain the differences in density between edge and interior ofT. testudinum patches for peracarids in 1994 and in 1995. Active accumulation at edges may also explain differeces in density for some decapod taxa. Chauges in gastropod densities between habitats may reflect larval settlement patterns. Results showed a distinct settlement shadow for the gastropodCaecum nitidum whose densities (primarily second stage protoconch) increased by more than an order of magnitude in 1994. Settlement shadows and post-settlement processes may also explain density differences of polychaetes between the edge and interior ofT. testudinum patches. The differences in faunal densities between edge and interior habitat resulted in habitat specific differences in secondary production among the major taxonomic groups. On four of five dates in 1994 and in 1995, secondary production was greater at edge than interior locations. These unexpected results suggest that differences in faunal densities and secondary production between edges and interiors of seagrass patches represent a potentially vital link in seagrass trophic dynamics. If this elevated secondary production leads to increases in trophic transfer, then edges may serve as a significant trophic conduit to higher-level consumers in this system.     

Differential Effects of Bivalves on Sediment Nitrogen Cycling in a Shallow Coastal Bay

In coastal ecosystems, suspension-feeding bivalves can remove nitrogen though uptake and assimilation or enhanced denitrification. Bivalves may also retain nitrogen through increased mineralization and dissimilatory nitrate reduction to ammonium (DNRA). This study investigated the effects of oyster reefs and clam aquaculture on denitrification, DNRA, and nutrient fluxes (NO _x , NH₄ ⁺, O₂). Core incubations were conducted seasonally on sediments adjacent to restored oyster reefs (Crassostrea virginica), clam aquaculture beds (Mercenaria mercenaria) which contained live clams, and bare sediments from Smith Island Bay, Virginia, USA. Denitrification was significantly higher at oyster reef sediments and clam aquaculture site than bare sediment in the summer; however, DNRA was not enhanced. The clam aquaculture site had the highest ammonium production due to clam excretion. While oyster reef and bare sediments exhibited seasonal differences in rate processes, there was no effect of season on denitrification, or dissimilatory nitrate reduction to ammonium (DNRA) or ammonium flux at the clam aquaculture site. This suggests that farm management practices or bivalve metabolism and excretion may override seasonal differences. When water column nitrate concentration was elevated, denitrification increased in clam aquaculture site and oyster reef sediments but not in bare sediment; DNRA was only stimulated at the clam aquaculture site. This, along with a significant and positive relationship between denitrification and sediment organic matter, suggests that labile carbon limited nitrate reduction at the bare sediment site. Bivalve systems can serve as either net sinks or sources of nitrogen to coastal ecosystems, depending mainly on the type of bivalve, location, and management practices.     

Bacterial diversity and distribution in seven different estuarine sediments of Poyang Lake,China

In this study, bacterial community compositions in seven different estuarine sediments of Poyang Lake were analyzed using 16S rRNA gene-targeted metagenomic approach. Remarkable differences in the bacterial diversity were observed in these different estuarine sediments. Le, Chang and Rao river samples exhibited the higher bacterial diversity; the Fu river sample showed the less diversity. Bacterial richness and diversity were positively regulated by sediment inorganic phosphorus, and nitrite nitrogen, total phosphorus and inorganic phosphorus were found to be important drivers for bacterial community compositions. Proteobacteria, Acidobacteria, Firmicutes, Chloroflexi, Bacteroidetes, Planctomycetes, Gemmatimonadetes, Actinobacteria, Nitrospirae, and Verrucomicrobia were the major components of sediment bacterial communities. Among them, Proteobacteria was the most dominant phylum, followed by Acidobacteria and Firmicutes. Our study gives a comprehensive insight into the structure of bacterial community of the different estuarine sediments of Poyang Lake, indicating that the environmental factors played a key role in influencing the bacterial community composition in the freshwater ecosystem.