Genetic variability of wild Agave angustifolia populations based on AFLP: A basic study for conservation

Agave angustifolia is taken from wild populations in the desert of Sonora, Mexico, to make the alcoholic drink known as “bacanora”. An increase in the demand for this beverage has led to overexploitation of these agaves. We used AFLP to measure the genetic variability within and between natural populations of the species. The fixation index (FST) and population genetic distances (GD) were determined for three populations of A. angustifolia. At the clonal level, the expected heterozygosis (HE), the proportion of polymorphic loci (P), and the genetic similarity indices (GSIs) were lower in one population. Total GSI for adults and offshoots was 0.924. There were no differences in the GSI within or between the populations and dendrogram showed three groups that partially reflect the geographical distribution of the populations. Some degree of genetic variation between mother plants and their vegetatively produced rhizomes was observed. At the species level, total expected heterozygosity was high (HT = 0.314) with a P value of 78%, and intermediate gene flow (Nm = 1.18), giving rise to a moderate fixation index (FST = 0.175). Nm, FST and GD values observed, indicate that urgent measures must be implemented to preserve the genetic diversity.     

Development of variable microsatellite loci and range-wide characterization of nuclear genetic diversity in the important dryland shrub antelope bitterbrush (Purshia tridentata)

Antelope bitterbrush (Purshia tridentata Pursh DC; Rosaceae) is an arid-land shrub that occupies an important ecological niche in various fire-dominated communities across much of the western United States. Because of its importance as a browse for large mammals and a food source for granivores, P. tridentata is frequently planted by Federal agencies in arid-land revegetation. We are currently analyzing the range-wide genetic diversity of this species as part of a larger effort to develop seed movement guidelines. In this study, we describe the development of eight novel nuclear microsatellite loci and characterize the amount and apportionment of range-wide nuclear genetic diversity. The eight microsatellite loci exhibited a high level of polymorphism (13–33 alleles per locus) and in general, observed levels of heterozygosity did not deviate form Hardy–Weinberg expectations. An initial screen of 196 individuals from 12 widely distributed populations revealed a moderate amount of genetic differentiation (F_ST = 0.09, p < 0.001). Moreover, these loci successfully produced PCR products in cross-species amplifications with two closely related Purshia species. These results demonstrate the utility of these markers and provide useful measures of neutral genetic diversity and population differentiation.     

Are ferns in arid environments underestimated? Contribution from the Saharan Mountains

Although ferns are able to colonize dry regions through specific adaptations, they are suggested to be rare in arid environments. By comparing recent observations in the South-Saharan Mountains with existing data from the whole Sahara, we re-evaluated the distribution of the understudied Saharan fern diversity. Observations in the Aïr Mountains (Niger) from 2003 to 2006 identified six ferns species, among which three were new records for the Aïr and for Niger. A total of 17 species are currently known from the Sahara. The desiccation tolerant Actiniopteris radiata and Cheilanthes coriacea were located in habitats with abiotic refuges providing shade, whereas the drought avoiding Ophioglossum polyphyllum was found in a sandy highland plain. All were growing in isolated populations at elevations above 1600 m. These results, combined with data from the Hoggar and the Tibesti mountains, indicate that ferns are more frequent than initially thought in arid environments thanks to efficient dispersal, elevation refuges, physiological adaptations, and the presence of local abiotic refuges. The three newly recorded species most likely radiated from the Ethiopian highlands. Their deep isolation, their rarity, and their successful adaptation to drought suggest that their conservation status might be particularly high.     

Patterns of diversity of the Monte Desert small mammals across multiple spatial scales

The relationship between spatial scale and biodiversity patterns is a highly debated topic in ecology. We evaluated the partition of small mammal diversity at multiple spatial scales and analyzed protected areas in order to evaluate their role of protecting biodiversity at the regional scale. Diversity of small mammals in the Monte Desert was quantified at the regional biome scale (96,000 km²) (γ) and partitioned at three spatial scales: aridity range (α₃,n = 6,16 000 km²), locality level (α₂,n = 18,2-3 ha), and habitat patch (α₁,n = 51,0.6 ha). We estimated their diversity using an additive approach with three indices (richness, Shannon-Weiner, Simpson). Diversity was higher than expected at the “between aridity range (β₃)” scale, but lower at the “within-habitat scale (α₁)”. Alpha was higher than beta diversity for most spatial scales; and at the regional scale protected areas preserved a higher biodiversity than unprotected ones. Our results are the first to partition the diversity of desert small mammals at multiple spatial scales and to support the hypotheses of an irregular scale dependence of alpha and beta diversity when increasing the spatial scales. They also highlight that a better understanding of biodiversity patterns is gained when several tools are integrated and combined at different spatial scales.     

Predicting aboveground biomass of woody encroacher species in semi-arid rangelands,Ethiopia

Species-specific allometric models were developed to predict aboveground biomass (AGB) of eight woody species in the Borana rangelands, Ethiopia. The 23 equations developed (8 species; three biomass components: total aboveground, stem and branches) fit the data well to predict total AGB and by components for each of the species (r² > 0.70; p < 0.001). The AGB of tree shaped species (e.g., Acacia bussei and Acacia etabaica) were significantly predicted from a single predictor (circumference of the stem at ankle height), with a high coefficient of determination (r² > 0.95; p < 0.001). In contrast, the AGB of bushy shrubs (e.g., Acacia oerfota) was more effectively predicted by using the canopy volume (r² = 0.84; p < 0.001). Shrubs with a tall stem and an umbrella-like canopy structure (e.g., Acacia mellifera) were most accurately predicted by a combination of both circumference of the stem at ankle height and canopy volume (r² = 0.95; p < 0.001). Hence, our species-specific allometric models could accurately estimate their woody aboveground biomass in a semi-arid savanna ecosystem of southern Ethiopia. These equations will help in future carbon-trade discussions in times of climate change and CO₂ emission concerns and mitigation strategies.     

First evidence of scavenging behaviour in the herbivorous lizard Uromastyx aegyptia microlepis

In this study, we provide the first evidence of scavenging behaviour in the spiny-tailed agamid lizard (Uromastyx aegyptia microlepis), a species which heretofore has been considered a strict desert herbivore. We examined 294 faecal samples collected in the desert of Qatar and found that 84% of the faeces (n = 247) contained exclusively plant material. Grains of barley (Hordeum vulgare) were present, suggesting that Uromastyx can benefit from the food provided to livestock when wild plants are scarce. We also found remains of invertebrates, vertebrates and stones in the lizard faeces. The type of vertebrate remains found suggests scavenging behaviour and some flexibility in feeding behaviour where food resources are scarce. Overgrazing by camels and goats in the area may affect food availability for Uromastyx populations, suggesting the need for conservation measurements in the Qatar desert.     

沙冬青(Ammopiptanthus)的遗传结构与保育

沙冬青（Ammopiptanthus）是蒙新砾质荒漠中唯一常绿阔叶灌木孑遗,且已陷入濒临灭绝的境地。沙冬青属内分类争论已久。利用分子手段对国内沙冬青居群进行了遗传结构分析,以对其保护提供准确的遗传学信息。核序列和叶绿体间隔数据均表明,沙冬青属包含两个明显不同的分支,分别分布于塔里木荒漠与阿拉善荒漠,我们据此建议恢复分布于新疆的沙冬青居群的物种地位,即新疆沙冬青（A.nunas）。沙冬青属属下两个种遗传多样性均比较低,可能由于先天遗传不足及破碎化小居群的遗传漂变与近交作用。新疆沙冬青无明显的遗传结构。蒙古沙冬青（A.mongolicus）在阿拉善荒漠北部与南部出现了明显的遗传分歧,这可能是由于南北部居群由不同的避难所扩张而来。也为沙冬青的保护提出了建议。     

The impact of African elephants on Acacia tortilis woodland in northern Gonarezhou National Park, Zimbabwe

We investigated the impact of African elephants (Loxodonta africana) on the structure and composition of Acacia tortilis woodland in northern Gonarezhou National Park, southeast Zimbabwe. A. tortilis woodland was stratified into high, medium and low elephant utilisation categories based on evidence of elephant habitat use as determined through dung-count surveys in relation to distance of woodland patches from perennial and natural surface water sources. The following variables were recorded in each study plot: tree height, species name, number of species, plant damage, basal circumference and number of stems per plant. A total of 824 woody plants and 26 woody species were recorded from the sampled A. tortilis woodland patches. Mean tree densities, basal areas, tree heights and species diversity were lower in areas with medium and high elephant utilisation as compared to low elephant utilisation areas. Plants damaged by elephants increased with increasing elephant utilisation. The study findings suggest that A. tortilis woodland is gradually being transformed into an open woodland. We recommended that protected area management in arid and semi-arid areas should consider (i) formulating clear thresholds of potential concern to allow for the conservation of sensitive woodlands such as A. tortilis woodlands and (ii) establishing long-term vegetation monitoring programmes.     

Benefits of mycorrhizal inoculation in reintroduction of endangered plant species under drought conditions

Numerous human activities constitute threats to biodiversity. The effects of climate change, including increasing drought in already arid lands, pose an additional layer of uncertainty in the fate of rare species. In the case of plants, reintroduction is becoming an important active management practice in species conservation. We hypothesized that even under extreme drought inoculation with mycorrhizal fungi would increase growth rates of an endangered plant in experimental reintroduction. We selected a plant species, Abronia macrocarpa, and conducted the experiment in Texas while the area was experiencing mild and extreme drought intensities. Treatment plots were planted with seed inoculated with arbuscular mycorrhizal fungi and control plots were planted with seed coated with autoclaved inoculant. We analyzed measurements of growth and development of germinated plants. Mean number of leaves was greater in treatment plants (P = 0.005) and mean aerial diameter was larger in treatment plants (P = 0.02) than in control plants. Significantly improved growth suggests that inoculation is a viable technique to increase reintroduction success in plant species especially during periods of drought.     

Assessing regional differences in predation of endangered species: Implications from Texas populations of the endangered star cactus (Astrophytum asterias)

Understanding threats to endangered species is one of the most critical components of implementing a successful recovery plan. For the endangered star cactus Astrophytum asterias, both mammalian and insect herbivory have been documented as a major threat to populations in Mexico. Herein, we focus on populations of A. asterias in Texas, examining how mortality threats differ from populations found in Mexico as well as among sites within Texas. Our study supports insect and mammalian herbivory as a major threat to A. asterias in Texas, with reductions in population sizes ranging between 16 and 54%. However, our study highlights that both regional and local differences can influence rates of mortality even in a range-restricted species such as A. asterias and highlights the need to assess threats at both of these levels for effective development and implementation of endangered species recovery plans.     

Acacia communities and species responses to soil and climate gradients in the Sudano-Sahelian zone of West Africa

Abiotic environmental factors have a major impact on the distribution and performance of plant species. In order to assess two major species–environmental relations in Sudano-Sahelian Acacia woodlands, we tested the relationship of soil and climate variables on plant diversity as well as on species responses.The indicator species values clustered in five vegetation units characterized by three to ten diagnostic species with woody species richness means varying from three to seven species per 0.09 ha. The NMS ordination explained 65% of the variation in species composition and revealed that soil properties, annual precipitations and temperature range structured the diversity of Acacia communities. Along the annual precipitations gradient, the response of Acacia polyacantha and Acacia hockii showed maxima in the wettest zone of our study area (more than 850 mm/year) whilst Acacia laeta showed a maximum response in the driest zone (below 500 mm/year). The unimodal response of A. hockii, Acacia gourmaensis and Acacia seyal to the soil available water gradient spanned their central borders, respectively from 13 to 18% (optimum 16%), 11–20% (optimum 15%) and 4–12% (optimum 7.5%).The response of Acacia communities and species to soil and climate gradients, makes them performant afforestation species in specific habitats of the Sudano-Sahelian zone.     

Ecological impact of Prosopis species invasion in Turkwel riverine forest,Kenya

The impact of Prosopis species invasion in the Turkwel riverine forest in Kenya was investigated under three contrasting: Acacia, Prosopis and Mixed species (Acacia and Prosopis) canopies. Variation amongst canopies was assessed through soil nutrients and physical properties, tree characteristics and canopy closure. Invasion impact was evaluated by comparing herbaceous species cover and diversity, and occurrence of indigenous tree seedlings. Soil characteristics under Prosopis and Mixed species canopies were similar except in pH and calcium content, and had lower silt and carbon contents than soil under Acacia canopy. Tree density was higher under Prosopis intermediate under Mixed and lower under Acacia canopies. Prosopis trees had lower diameters than Acacia tortilis trees. Diameter classes' distribution in Mixed species canopy revealed invasion of Prosopis into mature A. tortilis stands. Herbaceous species cover and diversity were negatively correlated to Prosopis tree density; thus explaining the lower herbaceous species cover and diversity under Prosopis than under Acacia and Mixed species canopies. The study suggests a gradual conversion of herbaceous rich A. tortilis woodland to herbaceous poor Prosopis species woodland or thickets, through indiscriminate Prosopis invasion.     

Host specificity, nutrient and water dynamics of the mistletoe Viscum rotundifolium and its potential host species in the Kalahari of South Africa

The mechanisms underpinning local host specificity in mistletoes remain elusive. We determined the degree of host specificity in the mistletoe Viscum rotundifolium at Pniel Estates, near Kimberley, South Africa. We found that V. rotundifolium parasitises only Ehretia rigida and Ziziphus mucronata at this site. Both commonly parasitised host species were not the most abundant trees, were not the tallest trees, and did not have the highest water or nutrient content of trees in the area, although these factors are good predictors for mistletoe parasitism. Mistletoe seeds deposited on branches of E. rigida and Z. mucronata have a greater chance of attachment and subsequent survival, compared with those seeds deposited on co-occurring Acacia and other potential host species. The mistletoes had higher water potential than their host trees and by doing so they can passively maintain the flow of nutrients. In addition, the mistletoes had a N:Ca ratio >1, indicating active uptake from host phloem. Thus, this mistletoe species uses both passive and active uptake, which may be a selective advantage in a nutrient-poor environment or on a nutrient-deficient host species.     

Xylem anatomy and hydraulic conductivity of three co-occurring desert phreatophytes

The tree species Populus euphratica, the shrub Tamarix ramosissima and the sub-shrub Alhagi sparsifolia are phreatophytes that grow along the southern fringe of the Taklamakan Desert (NW China). We hypothesised that in the shoot xylem of these species, the fraction of conduits with a large cross-sectional area and the hydraulic conductivity decrease in the sequence A. sparsifolia > T. ramosissima > P. euphratica according to the different ground water distances at the typical sites of the species’ occurrence. The theoretical hydraulic conductivity related to the total cross-sectional xylem area (k_ttot) or to the cross-sectional area of the conduits (k_tcond) was computed using a modified Hagen-Poiseuille equation. The percentage of wide conduits and k_tcond were highest in A. sparsifolia, and smallest, in P. euphratica. With regard to k_ttot, the diffuse-porous to semi-ring-porous P. euphratica occupied an intermediate position due to an increased percentage of conducting area related to the total cross-sectional xylem area. This figure as well as k_ttot were lowest in the semi-ring-porous to ring-porous T. ramosissima. The k_ttot values corresponded to the leaf area-related hydraulic conductivity calculated from measurements in the field. Altogether, our results match the typical occurrence of the species with respect to the ground water depth.     

Conflation and aggregation of spatial data improve predictive models for species with limited habitats: A case of the threatened yellow-billed cuckoo in Arizona,USA

Riparian vegetation provides important wildlife habitat in the southwestern United States, but limited distributions and spatial complexity often leads to inaccurate representation in maps used to guide conservation. We test the use of data conflation and aggregation on multiple vegetation/land-cover maps to improve the accuracy of habitat models for the threatened western yellow-billed cuckoo (Coccyzus americanus occidentalis). We used species observations (n = 479) from a state-wide survey to develop habitat models from 1) three vegetation/land-cover maps produced at different geographic scales ranging from state to national, and 2) new aggregate maps defined by the spatial agreement of cover types, which were defined as high (agreement = all data sets), moderate (agreement ≥ 2), and low (no agreement required). Model accuracies, predicted habitat locations, and total area of predicted habitat varied considerably, illustrating the effects of input data quality on habitat predictions and resulting potential impacts on conservation planning. Habitat models based on aggregated and conflated data were more accurate and had higher model sensitivity than original vegetation/land-cover, but this accuracy came at the cost of reduced geographic extent of predicted habitat. Using the highest performing models, we assessed cuckoo habitat preference and distribution in Arizona and found that major watersheds containing high-probably habitat are fragmented by a wide swath of low-probability habitat. Focus on riparian restoration in these areas could provide more breeding habitat for the threatened cuckoo, offset potential future habitat losses in adjacent watershed, and increase regional connectivity for other threatened vertebrates that also use riparian corridors.     

Patterns of seed occurrence in corsac and red fox diets in Mongolia

Corsac fox (Vulpes corsac) and red fox (Vulpes vulpes) diets often consist of small quantities of vegetation, including fruit and seeds that may represent important sources of energy and nutrition. However, details of the species consumed are few, but may provide insight into the role of foxes as seed dispersers. We analyzed scats of corsac (n = 408) and red foxes (n = 533) collected in an arid region of Mongolia from June 2006 to June 2007. We found 13 seed species in corsac scats, the most common being Allium polyrhizum, Asparagus gobicus, and Tribulus terrestris, and 12 species in red fox scats, the most common being Amygdalus pedunculata, Corispermum mongolicum, and T. terrestris. The proportion of scats with seeds varied significantly by season for both foxes. Seeds occurred most frequently during the breeding period, which corresponded with winter, and least frequently during the dispersal period in autumn for both species. We detected no differences in the proportion of scats with seeds between species seasonally. Our results suggest that fruit represents an important component of diet, especially during winter when availability of other prey items is low, and that both foxes may facilitate seed dispersal of some plant species.     

Allometric relationships and peak-season community biomass stocks of native shrubs in Senegal's Peanut Basin

Allometric equations and community biomass stocks are presented for Guiera senegalensis J.F. Gmel (Gs) and Piliostigma reticulatum (DC.) Hochst (Pr) – two native shrub species in the Sahel. These shrubs are of interest because they dominate semi-arid sub-Sahalien Africa but have been largely overlooked as a key biomass component and regulator of ecosystem composition and function in this landscape. In Year 1, best predictors of aboveground biomass were height and number of stems (Gs) and crown diameter (Pr); and for belowground biomass were height and basal diameter (Gs) and basal diameter (Pr). In Year 2, height and crown diameter were the best predictors of aboveground biomass (R² = 0.90 for Gs and 0.87 for Pr), whereas basal diameter and number of stems (Gs) and basal diameter (Pr) were best predictors of belowground biomass. Peak-season biomass estimates ranged from 0.44 to 4.58 ton ha^?1 (mean = 2.38 ton ha^?1) in the Gs sites and from 0.33 to 7.38 ton ha^?1 (mean = 3.71 ton ha^?1) in the Pr communities. Both species exhibited unusually large root:shoot ratios (4.5:1 for Gs and 10.2:1 for Pr). Although models differ between years, allometric relationships provide reasonable biomass estimates for Gs and Pr.     

Analyzing the community composition of arbuscular mycorrhizal fungi colonizing the roots of representative shrubland species in a Mediterranean ecosystem

Community composition of arbuscular mycorrhizal (AM) fungi was analyzed in the roots of five representative shrub species (Genista cinerea, Lavandula latifolia, Rosmarinus officinalis, Thymus mastichina and Thymus zygis) growing in a typical semi-arid Mediterranean ecosystem. Roots from a well-preserved area of the ecosystem were extracted from soil and analyzed by nested PCR, single strand conformation polymorphism and sequencing of the NS31-AM1 and NS8-ARCH1311 regions of the small subunit of the ribosomal DNA (SSU rDNA). Ten AM fungal phylotypes were identified; eight belonged to the Glomeraceae and two to the Diversisporaceae. Only two of the phylotypes clustered with sequences of morphologically defined species and a high dominance by one AM group (Glomus intraradices) was detected. Our diversity analyses revealed that the AM fungal communities of G. cinerea, L. latifolia and T. mastichina did not significantly differ while the AM fungal communities of R. officinalis and T. zygis were distant from this cluster and from each other. The highest diversity was found in the roots of T. zygis. Our data indicate that co-occurring plant species may house distinct communities of AM fungi.     

Moderate water supply and partial sand burial increase relative growth rate of two Artemisia species in an inland sandy land

Artemisia ordosica and Artemisia sphaerocephala seedlings were buried in sand to depths of 0, 0.25, 0.5, 0.75, 1 and 1.25 times the seedling height (H) and supplied with 2.5, 5.0, 7.5 and 10.0 mm of water every three days. For A. ordosica, the highest relative growth rate (RGR) and seedling height were achieved with 75 mm/month water supply and 0.5 H burial at 50 days, and the RGR decreased with 100 mm/month water supply. For A. sphaerocephala, the highest RGR was reached with 50 mm/month water supply and 0.5 H burial, but plants from this species had the greatest seedling height with 25 mm/month water supply and 0.75 H burial. A. ordosica and A. sphaerocephala have different proportions of their biomass in roots and shoots and thus are adapted to sandy environments in different ways. Partial sand burial significantly increased the RGR and growth height of the two Artemisia species, but complete burial lead to seedling death. Differences in the growth response to burial and moisture levels help explain why A. sphaerocephala is primarily found on drifting dunes and A. ordosica on semi-fixed and fixed dunes.     

Quantifying the variability and allocation patterns of aboveground carbon stocks across plantation forest types,structural attributes and age in sub-tropical coastal region of KwaZulu Natal,South Africa using remote sensing

Quantifying the variability and allocation patterns of aboveground carbon stocks across plantation forests is central in deriving accurate and reliable knowledge and understanding of the extent to which these species contribute to the global carbon cycle and towards minimizing climate change effects. The principal objective of this study was to quantify the variability and allocation patterns of aboveground carbon stocks across Pinus and Eucalyptus plantation forests, tree-structural attributes (i.e. stems, barks, branches and leaves) and age groups, using models developed based on remotely sensed data. The results of this study demonstrate that aboveground carbon stocks significantly (α = 0.05) vary across different plantation forest species types, structural attributes and age. Pinus taeda and Eucalyptus grandis species contained aboveground carbon stocks above 110 t C ha⁻¹, and Eucalyptus dunii had 20 t C ha⁻¹. Across plantation forest tree structural attributes, stems contained the highest aboveground carbon stocks, when compared to barks, branches and leaves. Aboveground carbon stock estimates also varied significantly (α = 0.05) with stand age. Mature plantation forest species (i.e. between 7 and 20 years) contained the highest aboveground carbon stock estimates of approximately 120 t C ha⁻¹, when compared to younger species (i.e. between 3 and 6 years), which had approximately 20 t C ha⁻¹. The map of aboveground carbon stocks showed distinct spatial patterns across the entire study area. The findings of this study are important for understanding the contribution of different plantation forest species, structural attributes and age in the global carbon cycle and possible climate change moderation measures. Also, this study demonstrates that data on vital tree structural attributes, previously difficult to obtain, can now be easily derived from cheap and readily-available satellite data for inventorying carbon stocks variability.