Spatial and temporal variation of the nekton and hyperbenthos from a temperate European estuary with regulated freshwater inflow

The aquatic macrofauna of the Guadalquivir estuary were sampled (1 mm mesh persiana net) at 5 sampling sites located along the entire (except the tidal freshwater region) estuarine gradient of salinity (outer 50 km). A total of 134 fish and macroinvertebrate species was collected but only 62 were considered common or regularly present in the estuary. Univariate measures of the community structure showed statistically significant differences among sampling sites: species richness, abundance, and biomass decreased in the upstream direction, being positively correlated with the salinity. Temporal differences of these three variables were also statistically significant. While a clear seasonal pattern (minimum densities in winter and maximum in spring-summer) was observed for abundance and biomass, no such pattern existed for the number of species. Mysids was the most dominant group throughout the estuary (96% to 99% of abundance; 49% to 85% of biomass), although fish biomass was also important at the outer estuary (36% to 38%). Multivariate analyses indicated highly significant spatial variation in the macrofaunal communities observed along the salinity gradient. These analyses suggest that the underlying structure was a continuum with more or less overlapping distributions of the species dependent on their ability to tolerate different physicochemical conditions. There were also significant temporal (intermonthly + interannual) variation of the estuarine community; the relative multivariate dispersion indicated that monthly variation was more considerable (relative multivariate dispersion >1) at the outer part of the estuary during the wet year (last 20 km) and was higher in the inner stations during the dry year (32 to 50 km from the river mouth). Since a clear negative exponential relationship was observed between the freshwater input (from a dam located 110 km upstream) and water salinity at all sampling stations, it is concluded that the human freshwater management is probably affecting the studied estuarine communities. While the higher seasonal (long-term) stability of the salinity gradient, due to the human control of the freshwater input, may facilitate the recruitment of marine species juveniles during the meteorologically unstable early-spring, the additional (short-term) salinity fluctuations during the warm period may negatively affect species that complete their lifecycle within the estuary.     

Impact of Farakka barrage on the hydrology and fishery of Hoogly estuary

Construction of the Farakka barrage on the Ganga River in April 1975 to augment water supply to the Calcutta port has brought about a significant increase in freshwater discharge in its distributary, the Hoogly estuary. This has naturally resulted in major changes in the ecology of this estuary, causing modifications in the structure of its fishery resources, fishing pattern, and fish production. This paper presents observations on salinity, plankton, bottom biota, fishery resource, and fish production of different zones of the Hooghly estuary during the period 1982–1992. Comparison with similar studies made before and immediately after commissioning of the Farakka barrage (1975–1977) has revealed that the increased freshwater discharge has resulted in considerable decrease in salinity throughout the estuary. The freshwater zone now extends toward the mouth of the estuary. The true estuarine zone has moved seaward and the marine zone has been restricted to the area near the mouth of the estuary. This has effected major changes in plankton dynamics, sharp decline in the fishery of marine and neritic species in the upper estuary, caused a significant increase in catch ofTenualosa ilisha and an over twofold increase in the average annual fish landings from the estuary as a whole. New zonations have been proposed based on the presently, observed salinity values, which are the most significant factor in determining the fishery of any estuary. An interdisciplinary study of the ecology of the new zones is needed to establish their correct biological characteristics.     

The abundance and diversity of larval and juvenile fish in a tropical estuary

The larval and juvenile fish of the Cayenne river estuary (French Guiana, South America) were sampled at two stations from June 1989 until October 1990. A total of 52,989 individuals from 59 species, some still incompletely identified, were collected. Three families, Engraulidae, Gobiidae and Sciaenidae, accounted for over 97% of the total number of juveniles. The analysis of data over this period showed low diversity, and a difference in diversity between the two sampling locations (H′ = 1.24 and 1.68). The results conform to some theoretical models of abundance that suggest a relative equilibrium of juvenile assemblages. In contrast, the seasonal variations in diversity and abundance and the results of a correspondence analysis showed significant differences in species distribution and in their relative abundance at the two sampling locations at certain periods, mainly in the rainy season. Our study indicates that, in spite of an apparent stability, the year to year variation in salinity and freshwater inputs could affect juvenile recruitment of some species and induces modifications in the composition of larval and juvenile estuarine fish assemblages.     

Nekton variations in tributaries along a hydrologically modified North Carolina estuary

Structure and temporal variability in nekton communities were examined for four small brackish creeks along a major tributary (Adams Creek) of the Neuse River estuary, North Carolina during May–September 1994. An inverse salinity gradient was observed along Adams Creek with highest values in the most upstream creek due to a manmade channel connecting the creek to the Newport River estuary. The nekton communities of the four tributaries were similar with some differences in relative abundance of individual species and timing of recruitment and migrations. Bay anchovies (67%), spot (19%), and brown shrimp (6%) were the most abundant species, with the top ten species accounting for 98% of the total catch. The transport of high salinity water (and presumably nekton larvae) into the headwaters of Adams Creek via the canal appeared to have a strong influence on the nekton community; the nekton community present in the Adams Creek system resembled communities in mesohaline waters closer to the outer banks rather than those in an adjacent creek along the Neuse River estuary (South River estuary). Cluster analysis indicated nekton in the creeks could be grouped into early and late season assemblages. Canonical correspondence analysis suggested that neither the creeks nor the dominant species were strongly related to any measured environmental variables indicating habitat suitability was similar regardless of the differences in watershed activities among the four creeks.     

The effect of impoundments on the structure and function of fish fauna in a highly regulated dry tropics estuary

Ross River flows through the Townsville/Thuringowa urban area in north Queensland, Australia, which has a dry tropical climate characterized by high inter-annual rainfall variation. Unregulated rivers in the Ross catchment basin deliver freshwater flows to their estuaries during both strong and weak wet seasons. The construction of a series of dams and weirs on Ross River means the wet-dry cycle is accentuated, leading to constant marine salinities throughout the estuary becoming the norm, with a lack of freshwater flow for five or more years at a time. The fish fauna of Ross River estuary was sampled in the post wet and dry seasons during an extremely dry climatic period (1994) and extremely wet climatic period (2000) using a small mesh (6 mm) pocket seine net. The fish fauna seemed to reflect seasonal differences. Catches from 1994 (dry period) were comprised entirely of 88 marine and euryhaline species, while the 69 species captured in 2000 (wet period) included 13 freshwater species. However, the freshwater species in the upper estuary were individuals washed over the weir, rather than part of a functional faunal gradient. During 1994 faunal composition was related more to site identity than to the position of the site along an upstream gradient. In contrast, during 2000 there were clear upstream faunal gradients with compositions in upstream sites heavily influenced by freshwater species, and marine and euryhaline species dominating downstream sites. Patterns of species dominance also varied between years. In contrast, trophic composition showed consistent shifts in both years, from high proportions of herbivores, carnivores and benthoplanktivores in May towards high proportions of benthivores in August. Not only do faunal composition, seasonal faunal change and ecological connectivity seem to be impaired, but ecological processes in the estuary that rely on seasonal freshwater flows are likely to be unable to operate normally in most years. The extreme seasonality in Ross River may serve as a model for many of the changes that will be experienced in dry tropics estuaries under global climate change scenarios of more extreme seasonality.     

Seasonal occurrence of larval and juvenile fishes in a Virginia Atlantic coast estuary with emphasis on drums (Family sciaenidae)

The seasonal occurrence and relative abundance of larval and juvenile fishes, particularly members of the family Sciaenidae, from a Virginia Atlantic coast estuary were determined from ichthyoplankton and otter trawl collections made from March 1979 to March 1980. The larvae of 19 species in 14 families were identified in the ichthyoplankton. Larvae of the engraulid, Anchoa mitchilli (bay anchovy), and the atherinid, Menidia menidia (Atlantic silverside), dominated the samples and made up 13 and 22%, respectively, of the 9,440 larvae collected. Peak occurrence of all larvae was from May to August. The juveniles of 28 species in 19 families were identified from otter trawl collections. Juvenile sciaenids numerically dominated the trawl collecions and made up 68% of the trawl catch. Juvenile density peaked during September through December.     

The impact of a severe drought on the vegetation of a subtropical estuary

In order to document the effect of the recent drought and the resulting marine intrusion event on plant-community shifts in a Louisiana estuary, we analyzed two vegetation data sets collected in Barataria estuary in 1997 and 2000 and compared community shifts to surface salinity changes at four points along the estuarine gradient within the study area. We used the major vegetation types identified in our previous research of larger data sets and tested the use of a simple vegetation classification technique. This vegetation classification technique is based primarily on the dominant and co-dominant species, and secondarily on the number of taxa observed. To distinguish vegetation types with similar dominant species but different associated species, the vegetation classification technique used a salinity score derived from the species composition. Surface water salinity increases were reflected by a change in species composition in the mesohaline to fresh marshes. The largest species composition shift observed was the shift from oligohaline wiregrass (species rich vegetation type dominated bySpartina patens) to mesohaline wiregrass (vegetation type dominated byS. patens with few other species). Shifts in vegetation composition may have been enhanced by the presence of the major dominant species at a low abundance in other vegetation types. The vegetation classification technique used could classify over 95% of the stations. This vegetation classification technique provides a simple method to classify Louisiana's coastal vegetation based on plant species composition.     

Transformation of phosphorus in the Elbe estuary

The distribution of dissolved and particle-bound phosphorus (P) was investigated in the Elbe estuary during March 1995. The forms of particulate P were studied with a sequential extraction technique. Organic P dominated particle-bound P in the outer reaches of the estuary (52%), decreased to a minimum of 21% in the turbidity zone, and increased to 33% further upstream. Fe-bound P was the second most important P species in the outer reaches (27%) and dominated in the turbidity zone (up to 57%) and upstream of the turbidity zone (up to 48%). The P:Fe ratio increased with decreasing salinity, from 0.11 in the outer reaches to about 0.22 at zero salinity. Dissolved inorganic P release from reverine suspended matter was about two to three times larger than release, from marine suspended matter and was dominated by release of Fe-bound P. Dissolved inorganic P release from marine and from riverine organic matter were of equal importance. Because marine suspended matter dominates in the estuary, this suggests riverine organic matter is remineralized much faster than marine organic matter. This is in line with the refractory nature of marine organic matter (no phytoplankton bloom) and the easily degradable character of the riverine suspended matter (phytoplankton bloom) in the Elbe estuary during March 1995.     

Axial zonation patterns of subtidal macrozoobenthos in the Gamtoos estuary,South Africa

The distribution of macroinfauna was quantified in subtidal, soft-bottom habitats, extending from the estuarine mouth to the tidal head of the Gamtoos—a small, shallow, temperate estuary situated on the south coast of South Africa. Sampling covered the full salinity gradient from fresh to marine waters, and all sediment types from marine sands to fluvial silts. A total of 35 taxa was recorded, of which 22 occurred throughout the year. Species richness and diversity declined from the seawater-dominated mouth region toward the fresh water section at the tidal head of the estuary. Sediment type generally bore no clear relation to biotic diversity. A marked drop in salinity between winter and summer sample series (Δ 0.2‰ to 24‰) coincided with a reduction of mean macrofaunal density by 70%, a more seaward relocation, and a compression of axial ranges of most taxa. Numerical classification and ordination of faunistically similar regions and of co-occurring species delineated four habitat zones along the longitudinal axis of the estuary which harbour four distinct macrofaunal assemblages: 1) A tidal inlet area with salinities close to seawater; clean, coarse, marine sands, rich in CaCO₃ harbour a stenohaline fauna normally found on adjacent, marine sandy beaches. 2) In the lower reaches, where fine, fluvial silts of high organic content prevail, euryhaline polychaetes dominate the macrozoobenthic community; bottom salinities in this zone seldom dropped below 25‰ 3) The middle reaches, characterized by oligohaline- to polyhaline waters, stretch over sandy sediments of intermediate carbonate, silt, and organic fractions; the fauna comprises typical estuarine forms, which occurred throughout most of the estuary except at its seaward and landward limits. 4) The upper reaches encompass the limnetic waters near the tidal head of the estuary with sediments in this zone being composed mostly of coarse, clean sands, low in CaCO₃; the macrobenthos in this region is dominated by taxa of freshwater origin, which generally do not penetrate seaward beyond the oligohaline waters, and by exceptionally euryhaline estuarine species. Salinity appears as the main factor in controlling faunal assemblages at both extremes of the estuarine gradient (i.e., tidal inlet and head), whereas sediment type delineates between communities in the mesohaline to polyhaline reaches. Axial (i.e., from tidal inlet to tidal head of the estuary) zonation patterns of macroinfauna broadly matched those of mesozooplankton and fishes, supporting the notion of a general structure underlying species distribution patterns in the Gamtoos estuary.     

Eggs and early larvae of the bay anchovy,Anchoa mitchilli,and the weakfish,Cynoscion regalis,in lower Chesapeake Bay with notes on associated ichthyoplankton

The seasonal abundance and spatial distribution of eggs and early larvae of the bay anchovy,Anchoa mitchilli, and the weakfish,Cynoscion regalis, were determined from plankton collections taken during 1971–1976 in the lower Chesapeake Bay. Eggs and larvae of the bay anchovy,Anchoa mitchilli, dominated the ichthyoplankton, making up 96% of the total eggs and 88% of all larvae taken. A comparison of egg and larval densities from the lower Chesapeake Bay to existing data from other East Coast estuaries suggested that Chesapeake Bay is a major center of spawning activity for this species.Anchoa mitchilli spawning commenced in May when mean water column temperatures approached 17°C and abruptly ceased after August. Eggs and early larvae presented a continuous distribution throughout the study area during these months. Eggs and larvae of several sciaenid species, especiallyC. regalis, ranked second in numerical abundance. Larval weakfish were consistently taken in late summer of each sampling year but peak abundance and distribution was observed in August 1971. Sciaenid eggs exhibited a distinct polyhaline distribution with greatest concentrations observed at the Chesapeake Bay entrance or along the Bay eastern margin. Analysis of sciaenid egg morphometry and larval occurrence suggested spawning activity of at least four species. Additional important species represented by eggs and/or larvae in the lower Chesapeake Bay wereHypsoblennius hentzi, Gobiosoma ginsburgi, Trinectes maculatus, Symphurus plagiusa andParalichthys dentatus with the remaining species occurring infrequently.     

Downstream migration of juvenile European sturgeonAcipenser sturio L. in the Gironde estuary

The European sturgeon (Acipenser sturio) is an endangered diadromous fish species that spawns in the rivers in late spring and early summer. The juveniles spend their first years in the brackish waters (5‰ to 25‰) of the estuary zone before moving out to sea. This study describes the downstream migration pattern of juvenile sturgeon, belonging to the 1994 cohort, the only one born naturally in the Gironde basin, France since the end of the 1980s. During October 1994 to December 1996 the inland section of the Gironde estuary was sampled monthly by trawl (n=818 tows) and all European sturgeon caught (n=381) were marked and released. The first sturgeon of the 1994 cohort (TL=27 cm) were caught in early March 1995 in the zones furthest upstream. During their second fall of life, juveniles gradually acclimatized, and spread over a wide range of salinity conditions. A first incursion into marine water was also observed (at least for a few fish) by the end of the second winter. During this second period, sturgeon showed preference for two particular zones situated at 18 and 38 km, respectively, from the mouth of the estuary. These zones, belonging to two different salinity sectors of the estuary, did not appear to be any different to their neighbors with regards to depth and type of substrate. There were no significant size differences among estuarine zones. Seasonal movements of sturgeon seem to be motivated by a search for warmer temperatures. After a period of early acclimatization of 15 months, juvenile European sturgeon appear to be highly tolerant of salinity variations.     

Late stage bivalve larvae in a well-mixed estuary are not inert particles

Depth-specific sampling at a single location was used to examine the vertical distribution of pediveliger larvae of bivalve mollusks in the York River, an estuary of Chesapeake Bay, Virginia. The water column at the sampling site was usually well mixed, lacking consistent temperature or salinity gradients for larvae. Four species showed strong vertical stratification when collected simultaneously at three depths. Pediveliger stage larvae of a clam (Cyrtopleura costata), an oyster (Crassostrea virginica), and a shipworm (Bankia gouldi) were most abundant near the benthos, and least abundant near the surface. A mussel (Geukensia demissa), showed the reverse trend, with most pediveliger larvae near the surface. Tidal stage had a slight effect on two species (C. costata andC. virginica), but only to increase the relative abundance of larvae near the benthos during flood tide. Otherwise, neither tidal phase nor light levels (night versus day) had detectable effects on distribution patterns. Sampling very close to the sediment-water interface provided no evidence that pediveliger larvae spent a significant proportion of their time in this location. While the behavior of precompetent bivalve larvae may tend to retain them within an estuary, that of competent-to-metamorphose pediveliger larvae does not appear to have that function. Pediveliger larvae may regulate their depth to best locate potential settlement substrate. Such an hypothesis is consistent with adult habitat zones of at least some of these species in Chesapeake Bay. Removing competent-to-settle larvae from analyses of larval distributions in estuaries will enhance or clarify depth distribution patterns observed for earlier-stage larvae.     

Seasonal changes in the nekton community of the Suwannee River estuary and the potential impacts of freshwater withdrawal

In Florida, issues related to alterations of estuarine salinity caused by freshwater withdrawal have recently gained increasing attention. We examined nekton community structure in the Suwannee River estuary (1997–2000) and investigated the relationship between environmental factors and the abundance of fisheries resources. We compared nekton community structure and environmental factors seasonally and annually using multidimensional scaling (MDS) ordination and cluster analysis and observed a strong seasonal pattern. This pattern was consistent among years and closely paralleled those for temperature and river discharge. Representative species for cold seasons includedLeiostomus xanthurus andLagodon rhomboides, and those for warm seasons includedMembras martinica andAnchoa hepsetus. Species that contributed most to the dissimilarity in community structures between wet and dry seasons were abundant and generally preferred lower salinity (e.g.,L. xanthurus, Eucinostomus spp., andMenidia spp.). A period of low freshwater inflow during the latter portion of our study coincided with both decreases and increases in the abundances of some dominant and some economically important species. We have established a baseline which will assist in measuring the effects of long-term changes in freshwater input on the nekton communities of the Suwannee River estuary, but our ability to predict these effects is still limited.     

Distribution and migrations of the prawnPalaemon longirostris in the Mira River estuary (southwest Portugal)

Palaemon longirostris was sampled monthly at 12 sites in the Mira River estuary (southwest Portugal) from October 1990 to September 1991. Animals were counted, measured, and sexed. The estuarine distribution of prawns appeared to follow the salinity displacement, the animals being found at river stations during summer and autumn when saline encroachment up the estuary was greater. During winter and spring when freshwater input from the river was greatest, and thus moving the salinity gradient toward the mouth, the prawns migrated downstream to brackish areas. Ovigerous females were collected only from estuarine areas (January to August), suggesting that reproduction does not take place in freshwater habitats. Higher percentages of females than males were generally observed. Females, particularly ovigerous ones, were larger than males.     

Distribution and community structure of ichthyoplankton in Laguna Madre Seagrass meadows: Potential impact of seagrass species change

Seasonal ichthyoplankton surveys were made in the lower Laguna Madre, Texas, to compare the relative utilization of various nursery habitats (shoal grass,Halodule wrightii; manatee grass,Syringodium filiforme; and unvegetated sand bottom) for both estuarine and offshore-spawned larvae. The species composition and abundance of fish larvae were determined for each habitat type at six locations in the bay. Pushnet ichthyoplankton sampling resulted in 296 total collections, yielding 107,463 fishes representing 55 species in 24 families. A broad spectrum of both the biotic and physical habitat parameters were examined to link the dispersion and distribution of both pre-settlement and postsettlement larvae to the utilization of shallow seagrass habitats. Sample sites were grouped by cluster analysis (Ward’s minimum variance method) according to the similarity of their fish assemblages and subsequently examined with a multiple discriminant function analysis to identify important environmental variables. Abiotic environmental factors were most influential in defining groups for samples dominated by early larvae, whereas measures of seagrass complexity defined groups dominated by older larvae and juveniles. Juvenile-stage individuals showed clear habitat preference, with the more shallowHalodule wrightii being the habitat of choice, whereas early larvae of most species were widely distributed over all habitats. As a result of the recent shift of dominance fromHalodule wrightii toSyringodium filiforme, overall reductions in the quality of nursery habitat for fishes in the lower Laguna Madre are projected.     

珠江口黄茅海河口湾表层沉积物中有孔虫和介形虫的分布及其影响因素*

珠江口黄茅海河口湾的表层沉积物100个站位样品中共发现有孔虫21属36种、介形虫16属20种。优势种组合分别为Ammonia beccarii-Quinqueloculina akneriana rotunda-Cavarotalia annectens-Elphidium advenum和Neomonoceratina delicata-Sinocytheridea impressa-Bicornucythere bisanensis。有孔虫及介形虫的丰度和分异度均表现出“北低南高”,即口门低、向海高的特点。样品中有孔虫和介形虫属种的去趋势对应分析（DCA）表明,盐度是影响该区有孔虫和介形虫分布的最重要因素,其次是水动力条件,水深对有孔虫和介形虫的分布也有一定影响,但并非主要控制性因素。由于受径流影响较大,河口湾北部的水体盐度较低、径流动力较强,不利于有孔虫和介形虫的生存,导致其丰度及分异度均较低。河口湾南部水体盐度升高,潮流动力较强,同时受众多岛屿屏障作用,环境较为稳定,有孔虫和介形虫的丰度和分异度均迅速上升。     

The Influence of Freshwater on Nekton Community Structure in Hydrologically Distinct Basins in Northeastern Florida Bay, FL, USA

Natural patterns of freshwater delivery to the Florida Bay estuary have been disrupted by flood-control and water-supply projects. Restoration efforts are likely to alter salinity regimes and patterns of nekton distribution and abundance. Spatial and seasonal community structure differences were analyzed for small-bodied and large-bodied nekton collected by fisheries-independent monitoring from 2006 through 2009 in the northeastern basins of Florida Bay. The small-bodied nekton community was dominated by resident fish that may be indicators of ecosystem health because they spend their lives within the bay and are not directly influenced by human harvest; the large-bodied nekton community was dominated by transient and, in some cases, economically important species. Differences in community structure revealed a gradient in similarity that was associated with freshwater influence, as determined by salinity variability over the study period. These observed changes associated with salinity regimes within and between basins underscore the importance of monitoring communities before and after alterations in freshwater inflow.     

A Before–After–Control–Impact Analysis of the Effects of a Mississippi River Freshwater Diversion on Estuarine Nekton in Louisiana, USA

Since 1991, the Caernarvon Freshwater Diversion has been reintroducing Mississippi River water into a previously hydrologically isolated estuary in an effort to restore wetlands. To determine the effect of freshwater inflow on estuarine nekton community structure, a Before?CAfter?CControl?CImpact study design was applied. As a result of the opening, salinities in the impact area decreased, and the nekton community structure in the estuary changed significantly. Species of economical or ecological importance either increased in biomass or exhibited no response to the opening of the diversion. Higher abundances of small fish were observed in the area receiving freshwater flow, which is an indication that the area serves as a refuge from large marine predators. Because a salinity gradient was established, as opposed to a uniform but lower salinity regime, aquatic habitat was available to nekton species from a wide spectrum of salinity tolerances.     

Simulating the lateral transport of ichthyoplankton in the Potomac estuary

Previous simulations of potential ichthyoplankton entrainment by power generating stations on the Potomac estuary have not included the influence of lateral transport in distributing eggs and larvae over the nursery area. Therefore, two-dimensional, vertically-averaged hydrodynamic and kinematic models of passive organism transport were developed to represent advective and dispersive processes near the proposed Douglas Point Nuclear Generating Station. Although the more refined model did not substantially alter the estimate of ichthyoplankton entrainment, it did reveal that lateral inhomogeneities in hydrodynamics could engender severalfold differences in entrainment probabilities on opposite sides of the estuary. Models of higher resolution and greater biological detail did not project greater total entrainment by the Douglas Point plant, because the volume of nontidal flow past the site was large in comparison to the proposed rate of cooling water withdrawal.     

Development of ecosystem indicators for the Suwannee River estuary: Oyster reef habitat quality along a salinity gradient

The Suwannee River watershed is one of the least developed in the eastern United States, but with increasing urbanization it is facing potential long-term alterations in freshwater flow to its estuary in the Gulf of Mexico. The purpose of this study was to develop biological indicators of oyster reef state along a natural salinity gradient in the Suwannee River estuary in order to allow the rapid assessment of the effect of changing freshwater input to this system. Percent cover and density of three size classes of living oysters, as well as the abundance of several predominant reef-associated invertebrates, were measured along a broad salinity gradient in the estuary and were correlated with salinity estimates from a long-term database for the preceding 12–24 mo. All eastern oyster,Crassostrea virginica, parameters (percent cover and density of three size classes) were significantly and negatively related to salinity. Data from samples collected near the lower intertidal were more closely dependent upon salinity than were samples from the higher intertidal at the same sites. Salinity differences were most closely reflected in differences in total oyster cover. This relationship corresponded with a general decline in oyster habitat with increasing distance from the mouth of the Suwannee River. Species richness was significantly and positively correlated with allC. virginica parameters (percent cover and density of three size classes), but the relationship explained only about half the variability. Density data of the hooked mussel,Ischadium recurvum, and a mud crab,Eurypanopeus depressus, were positively and strongly correlated withC. virginica parameters, likely reflecting the abundance of habitat provided byC. virginica shells. All of the biological indicators measured responded similarly along the salinity gradient, indicating they provide reliable indices of the effect of changing salinities in the Suwannee River estuary over the previous 1 or 2 yr. Some areas of positive relief defined as reefs 30 years ago are no longer oyster habitat, suggesting an ongoing decline, but nearshoreC. virginica were abundant. *** DIRECT SUPPORT *** A02BY003 00002