Nutrient flux in a landscape: Effects of coastal land use and terrestrial community mosaic on nutrient transport to coastal waters

Long-term interdisciplinary studies of the Rhode River estuary and its watershed in the mid-Atlantic coastal plain of North America have measured fluxes of nitrogen and phosphorus fractions through the hydrologically-linked ecosystems of this landscape. These ecosystems are upland forest, cropland, and pasture; streamside riparian forests; floodplain swamps; tidal brackish marshes and mudflats; and an estuarine embayment. Croplands discharged far more nitrogen per hectare in runoff than did forests and pastures. However, riparian deciduous hardwood forest bordering the cropland removed over 80 percent of the nitrate and total phosphorus in overland flows and about 85 percent of the nitrate in shallow groundwater drainage from cropland. Nevertheless, nutrient discharges from riparian forests downslope from croplands still exceeded discharges from pastures and other forests. The atomic ratio of nitrogen to phosphorus discharged from the watersheds into the estuary was about 9 for total nutrients and 6 for inorganic nutrient fractions. Such a low N:P ratio would promote nitrogen rather than phosphorus limitation of phytoplankton growth in the estuary. Estuarine tidal marshes trapped particulate nutrients and released dissolved nutrients. Subtidal mudflats in the upper estuary trapped particulate P, released dissolved phosphate, and consumed nitrate. This resulted in a decrease in the ratio of dissolved inorganic N:P in the estuary. However, the upper estuary was a major sink for total phosphorus due to sediment accretion in the subtidal area. Bulk precipitation accounted for 31 percent of the total nongaseous nitrogen influx to the landscape, while farming accounted for 69 percent. Forty-six percent of the total non-gaseous nitrogen influx was removed as farm products, 53 percent either accumulated in the watershed or was lost in gaseous forms, and 1 percent entered the Rhode River. Of the total phosphorus influx to the landscape, 7 percent was from bulk precipitation and 93 percent was from farming. Forty-five percent of the total phosphorus influx was removed as farm products, 48 percent accumulated in the watershed, and 7 percent entered the Rhode River. These nitrogen and phosphorus discharges into the Rhode River, although a small fraction of total loadings to the watershed, were large enough to cause seriously overenriched conditions in the upper estuary.     

Hot Spots of Nitrification in the Elbe Estuary and Their Impact on Nitrate Regeneration

Estuaries act as an organic matter and nutrient filter in the transition between the land, rivers and the ocean. In the past, high nutrient and organic carbon load and low oxygen concentration made the Elbe River estuary (NW Europe) a sink for dissolved inorganic nitrogen. A recent reduction in loads and subsequent recovery of the estuary changed its biogeochemical function, so that nitrate is no longer removed on its transition towards the coastal North Sea. Nowadays in the estuary, nitrification appears to be a significant nitrate source. To quantify nitrification and determine actively nitrifying regions in the estuary, we measured the concentrations of ammonium, nitrite and nitrate, the dual stable isotopes of nitrate and net nitrification rates in the estuary on five cruises from August 2012 to August 2013. The nitrate concentration increased markedly downstream of the port of Hamburg in summer and spring, accompanied by a decrease of nitrate isotope values that was clearest in summer exactly at the location where nitrate concentration started to increase. Ammonium and nitrite peaked in the Hamburg port region (up to 18 and 8 μmol L^?1, respectively), and nitrification rates in this region were up to 7 μmol L^?1 day^?1. Our data show that coupled re-mineralization and nitrification are significant internal nitrate sources that almost double the estuary’s summer nitrate concentration. Furthermore, we find that the port of Hamburg is a hot spot of nitrification, whereas the maximum turbidity zone (MTZ) only plays a subordinate role in turnover of nitrate.     

Controls on nutrient and phytoplankton dynamics during normal flow and storm runoff conditions, southern Kaneohe Bay, Hawaii

Fluvial effects on nutrient and phytoplankton dynamics were evaluated in southern Kaneohe Bay, Oahu, Hawaii. Fluvial inputs occurred as small, steady baseflows interrupted by intense pulses of storm runoff. Baseflow river inputs only affected restricted areas around stream mouths, but the five storm events sampled during this study produced transient runoff plumes of much greater spatial extent. Nutrient loading via runoff generally led to an increase of the phytoplankton biomass and gross primary productivity in southern Kaneohe Bay, but the rapid depletion of nutrients resulted in a decline of the algal populations in the relatively short time of days. Under baseline conditions, water column primary productivity in southern Kaneohe Bay is normally nitrogen limited. Following storm events, the high ratio of dissolved inorganic nitrogen to dissolved inorganic phosphorus (DIN:DIP, 25–29) fluxes of runoff nutrients drove bay waters towards phosphorus limitation. A depletion of phosphate relative to DIN in surface waters was observed following all storm events. Due to high flushing rates, recovery times of bay waters from storm perturbations ranged from 3 to 8 d and appeared to be correlated with tidal range. Storm inputs have a significant effect on the water column ecosystem and biogeochemistry in southern Kaneohe Bay. The perturbations were only transient events and the system rapidly recovered to prestorm conditions.     

Nutrient biogeochemistry in an upwelling-influenced estuary of the Pacific northwest (Tillamook Bay,Oregon, USA)

Tillamook Bay, Oregon, is a drowned river estuary that receives freshwater input from 5 rivers and exchanges ocean water through a single channel. Similar to other western United States estuaries, the bay exhibits a strong seasonal change in river discharge in which there is a pronounced winter maximum and summer minimum in precipitation and runoff. The behavior of major inorganic nutrients (phosphorus, nitrogen, and silica) within the watershed is examined over seasonal cycles and under a range of river discharge conditions for October 1997–December 1999. Monthly and seasonal sampling stations include transects extending from the mouth of each river to the mouth of the estuary as well as 6–10 sites upstream along each of the 5 major rivers. Few studies have examined nutrient cycling in Pacific Northwest estuaries. This study evaluates the distributions of inorganic nutrients to understand the net processes occurring within this estuary. Based upon this approach, we hypothesize that nutrient behavior in the Tillamook Bay estuary can be explained by two dominant factors: freshwater flushing time and biological uptake and regeneration. Superimposed on these two processes is seasonal variability in nutrient concentrations of coastal waters via upwelling. Freshwater flushing time determines the amount of time for the uptake of nutrients by phytoplankton, for exchange with suspended particles, and for interaction with the sediments. Seasonal coastal upwelling controls the timing and extent of oceanic delivery of nutrients to the estuary. We suggest that benthic regeneration of nutrients is also an important process within the estuary occurring seasonally according to the flushing characteristics of the estuary. Silicic acid, nitrate, and NH₄ ⁺ supply to the bay appears to be dominated by riverine input. PO₄ ⁻³ supply is dominated by river input during periods of high river flow (winter months) with oceanic input via upwelling and tidal exchange important during other times (spring, summer, and fall months). Departures from conservative mixing indicate that internal estuarine sources of dissolved inorganic phosphorus and nitrogen are also significant over an annual cycle.     

Intra-annual Variability in Primary Producer Groups and Nitrogen Dynamics in an Intermittently Closed Estuary Exposed to Mediterranean Climate

Nutrient dynamics in estuaries are temporally variable in response to changing physical–chemical conditions and biogeochemical processes involving primary producer groups such as phytoplankton, microphytobenthos, seagrass and macroalgae. In order to reveal intra-annual changes in the biomass of primary producer groups and associated changes in estuarine nutrient dynamics, we developed a box model, coupling water inflows and outflows and nitrogen dynamics in Wilson Inlet, a large, central-basin-dominated, intermittently closed estuary exposed to a Mediterranean climate in Western Australia. The model is calibrated and validated with monitoring data, aquatic plant biomass estimates and biogeochemical rate measurements. Macrophytes and their microalgal epiphytes appear to rapidly assimilate nutrients from the first flush from the catchment in winter, but this buffer capacity then ceases, and a phytoplankton ‘bloom’ develops in response to subsequent river runoff events in spring. Significant amounts of bioavailable nitrogen are exported to the ocean because phytoplankton predominance occurs while the sand bar is breached. Surface sediments play a key role for nitrogen dynamics: In late spring to autumn, high light availability at the sediment surface stimulates high primary production by microphytobenthos, leading to reduced benthic ammonium fluxes particularly in the deep basin. Microphytobenthos contributes about 60% of annual whole-system primary production. Despite high benthic primary production, nitrogen release from sediments is the biggest nitrogen source to the estuary.     

Alternation of factors limiting phytoplankton production in the Cape Fear River Estuary

Phytoplankton nutrient limitation experiments were performed from 1994 to 1996 at three stations in the Cape Fear River Estuary, a riverine system originating in the North Carolina piedmont. Nutrient addition bioassays were conducted by spiking triplicate cubitainers with various nutrient combinations and determining algal response by analyzing chlorophyll a production and ¹⁴C uptake daily for 3 d. Ambient chlorophyll a, nutrient concentration, and associated physical data were collected throughout the estuary as well. At a turbid, nutrient-rich oligohaline station, significant responses to nutrient additions were rare, with light the likely principal factor limiting phytoplankton production. During summer at a mesohaline station, phytoplankton community displayed significant nitrogen (N) limitation, while both phosphorus (P) and N were occasionally limiting in spring with some N+P co-limitation. Light was apparently limiting during fall and winter when the water was turid and nutrient-rich, as well as during other months of heavy rainfall and runoff. A polyhaline station in the lower estuary had clearer water and displayed significant responses to nutrient additions during all enrichment experiments. At this site N limitation occurred in summer and fall, and P limitation (with strong N+P co-limitation) occurred in winter and spring. The data suggest there are two patterns controlling phytoplankton productivity in the Cape Fear system: 1) a longitudinal pattern of decreasing light limitation and increasing nutrient sensitivity along the salinity gradient, and 2) a seasonal alternation of N limitation, light limitation, and P limitation in the middle-to-lower estuary. Statistical analyses indicated upper watershed precipitation events led to increased flow, turbidity, light attenuation, and nutrient loading, and decreased chlorophyll a and nutrient limitation potential in the estuary. Periods of low rainfall and river flow led to reduced estuarine turbidity, higher chlorophyll a, lower ambient nutrients, and more pronounced nutrient limitation.     

Nutrient limitation in the lower Housatonic River estuary

One of the most serious threats to freshwater and marine ecosystems is high rates of anthropogenic nutrient loading, particularly nitrogen (N) and phophorus (P). One of the major freshwater sources of nutrients to Long Island Sound (LIS) is the Housatonic River (HR). Current management plans that call for reducing N inputs without reducing P inputs may change the N: P ratio in the water column and the pattern of algal nutrient limitation and species composition in the tidal portion of the river. To assess the current pattern of algal nutrient limitation in the HR estuary, nutrient bioassays were conducted in spring, summer, and fall at 5 sites throughout the tidal portion and adjacent LIS. Diatoms were a dominant taxon at all sites throughout the sampling period. Other seasonally important taxa include cyanobacteria, cryptophytes, and euglenoids. Phytoplankton in LIS were always strongly N limited and were co-limited by P in spring. During low flow (summer), phytoplankton in the lower HR estuary were N limited. Phytoplankton in the middle reaches showed no evidence of N or P limitation and were likely limited by other factors. In spring, phytoplankton in the upper HR estuary were P limited. Periods of N or P limitation were better correlated with periods of lower concentrations of nitrate or phosphate than with differences in N: P ratio. These results suggest that decreases in N concentration could increase the prevalence of N limitation throughout the estuary that in turn may reduce phytoplankton biomass and alter species composition of the phytoplankton.     

External nutrient sources,internal nutrient pools,and phytoplankton production in Chesapeake Bay

External nutrient loadings, internal nutrient pools, and phytoplankton production were examined for three major subsystems of the Chesapeake Bay Estuary—the upper Mainstem, the Patuxent Estuary, and the 01 Potomac Estuary—during 1985–1989. The atomic nitrogen to phosphorus ratios (TN:TP) of total loads to the 01 Mainstem, Patuxent, and the Potomac were 51, 29 and 35, respectively. Most of these loads entered at the head of the estuaries from riverine sources and major wastewater treatment plants. Approximately 7–16% for the nitrogen load entered the head of each estuary as particulate matter in contrast to 48–69% for phosphorus. This difference is hypothesized to favor a greater loss of phosphorus than nitrogen through sedimentation and burial. This process could be important in driving estuarine nitrogen to phosphorus ratios above those of inputs. Water column TN: TP ratios in the tidal fresh, oligohaline, and mesohaline salinity zones of each estuary ranged from 56 to 82 in the Mainstem, 27 to 48 in the Patuxent, and 72 to 126 in the Potomac. A major storm event in the Potomac watershed was shown to greatly increase the particulate fraction of nitrogen and phosphorus and lower the TN:TP in the river-borne loads. The load during the month that contained this storm (November 1985) accounted for 11% of the nitrogen and 31% of the phosphorus that was delivered to the estuary by the Potomac River during the entire 60-month period examined here. Within the Mainstem estuary, salinity dilution plots revealed strong net sources of ammonium and phosphate in the oligohaline to upper mesohaline region, indicating that these areas were sites of considerable internal recycling of nutrients to surface waters. The sedimentation of particulate nutrient loads in the upper reaches of the estuary is probably a major source of these recycled nutrients. A net sink of nitrate was indicated during summer. A combination of inputs and these internal recycling processes caused dissolved inorganic N to P ratios to approach 16:1 in the mesohaline zone of the Mainstem during late summer; this ratio was much higher at other times and in the lower salinity zones. Phytoplankton biomass in the mesohaline Mainstem reached a peak in spring and was relatively constant throughout the other seasons. Productivity was highest in spring and summer, accounting for approximately 33% and 44%, respectively, of the total annual productivity in this region. In the Patuxent and Potomac, the TN:TP ratios of external loads documented here are 2–4 times higher than those observed over the previous two decades. These changes are attributed to point-source phosphorus controls and the likelihood that nitrogen-rich nonpoint source inputs, including contributions from the atmosphere, have increased. These higher N:P ratios relative to Redfield proportions (16:1) now suggest a greater overall potential for phosphorus-limitation rather than nitrogen-limitation of phytoplankton in the areas studied.     

Estuarine Phytoplankton Responses to Hurricanes and Tropical Storms with Different Characteristics (Trajectory,Rainfall, Winds)

We examined the short-term (<1 month post-storm) impact of storms [Tropical Storm (TS) Helene in 2000, Hurricane (H) Isabel in 2003, H Alex, Tropical Depression (TD) Bonnie and TS Charley in 2004] varying in their trajectory, wind and rainfall characteristics, on water column structure, nutrients, and phytoplankton biomass in North Carolina’s Neuse R. Estuary (NRE). Data are presented from two sampling programs, ModMon (biweekly) and FerryMon (measurements made every 3 min daily). Helene’s winds mixed the previously stratified water column, delivering sediment-bound nutrients to the euphotic zone, and localized freshwater input from Helene was also evident. Mean chlorophyll a concentrations in the mesohaline portion of the NRE, where N was strongly limiting before the storm (molar DIN:DIP < 1), more than doubled after the storm. Unlike with Helene, the water column was well mixed before passage of Isabel, and nutrient concentrations were high. As a result, minimal impact on phytoplankton biomass was detected despite Isabel’s high winds and significant freshwater input. In fact, conditions became less favorable for phytoplankton growth after the storm. Alex was fast moving and relatively small, but its winds were sufficient to mix the water column. Although data from ModMon suggest that chlorophyll a was only slightly higher after passage of Alex, FerryMon detected an ephemeral bloom that was missed by ModMon. Overall, these results suggest that relatively small tropical storms and hurricanes can lead to significant increases in phytoplankton biomass. However, the phytoplankton response depends on both the characteristics of a particular storm and the physical–chemical conditions of the water column before storm passage. Finally, the ephemeral bloom that developed as a result of Alex, the strong response of phytoplankton in the mesohaline portion of the estuary to nutrient inputs, and their patchiness on several other occasions suggests that storms may create “hot spots” for trophic transfer and biogeochemical dynamics in estuaries. Adaptive sampling is necessary to capture these features and to fully understand the impact of perturbations such as storms on estuarine ecosystem functioning.     

Nutrient Loading and Transformations in the Columbia River Estuary Determined by High-Resolution In Situ Sensors

The Columbia River estuary is characterized by relatively large tidal currents and water residence times of a few days or less. These and other environmental conditions tend to suppress water column productivity and favor the export of riverborne nutrients to the coastal ocean. However, hotspots of biological activity may allow for significant nutrient transformation and removal within the estuary, but these processes have previously been difficult to quantify due to the challenges of obtaining measurements at appropriate frequency and duration. In this study, nutrient biogeochemical dynamics within the salt-influenced region of the estuary were quantified using high-resolution in situ observations of nutrients and physical water properties. During 2010, three autonomous nutrient sensors (Satlantic SUNA, SubChem Systems Inc. APNA, WET Labs Cycle-PO4) that together measured nitrate?+?nitrite, orthophosphate, ammonium, silicic acid, and nitrite were deployed on fixed observatory platforms. Hourly measurements captured tidal fluctuations and permitted an analysis of river and ocean end-member mixing. The results suggested that during summer, the lower estuary released high concentrations of ammonium and phosphate despite low concentrations in the river and coastal ocean. This was likely a result of organic matter accumulation and remineralization in the estuarine turbidity maximum and the lateral bays adjacent to the main channel.     

The Influence of Coastal Nutrients on Phytoplankton Productivity in a Shallow Low Inflow Estuary,Drakes Estero,California (USA)

Seasonal wind-driven upwelling along the U.S. West Coast supplies large concentrations of nitrogen to surface waters that drives high primary production. However, the influence of coastal upwelled nutrients on phytoplankton productivity in adjacent small estuaries and bays is poorly understood. This study was conducted in Drakes Estero, California, a low inflow estuary located in the Point Reyes National Seashore and the site of an oyster mariculture facility that produces 40 % of the oysters harvested in California. Measurements of nutrients, chlorophyll a, phytoplankton functional groups, and phytoplankton carbon and nitrogen uptake were made between May 2010 and June 2011. A sea-to-land gradient in nutrient concentrations was observed with elevated nitrate at the coast and higher ammonium at the landward region. Larger phytoplankton cells (>5 μm diameter) were dominant within the outer and middle Estero where phytoplankton primary productivity was fueled by nitrate and f-ratios were >0.5; the greatest primary production rates were in the middle Estero. Primary production was lowest within the inner Estero, where smaller phytoplankton cells (<5 μm) were dominant, and nitrogen uptake was dominated by ammonium. Phytoplankton blooms occurred at the outer and middle Estero and were dominated by diatoms during the spring and dry-upwelling seasons but dinoflagellates during the fall. Small flagellated algae (>2 μm) were dominant at the inner Estero where no blooms occurred. These results indicate that coastal nitrate and phytoplankton are imported into Drakes Estero and lead to periods of high new production that can support the oyster mariculture; a likely scenario also for other small estuaries and bays.     

海洋生物地球化学模式研究进展

海洋生物地球化学模式是定量认识物质的海洋生物地球化学循环、理解其控制机制以及预测体系变动的重要手段。20世纪90年代以来,该研究领域的进展主要体现在海洋生物地球化学循环的物理输送和生态动力学过程以及年际、年代际变动的模拟3个方面。物理过程模拟方面的进展,集中在寡营养海区上层海水营养盐的供应机制问题上,在经典的上升流、垂直扩散之外,提出涡旋可能构成一种重要的物理输入过程。而生态动力学过程的模拟方面,90年代前期考虑食物网基本结构,由浮游植物、浮游动物和细菌三大类群构成生物状态变量,氮和磷营养盐以及颗粒碎屑构成其他状态变量;90年代后期,开始引入铁和硅的限制问题,考虑不同浮游植物和浮游动物群落结构的影响,特别是浮游植物粒级结构变化的预测可能是未来该领域力图解决的一个技术问题。年际变化的模拟,多围绕ENSO事件对初级生产的影响及其机制问题展开;年代际和地质年代尺度的体系变动问题仍存在争论,相对缺乏有效的数值模拟研究。该研究领域未来应加强生物—化学过程的函数表达、物理模式、中尺度过程、边界交换以及资料获取技术等方面的研究,以应对目前面临的诸多问题与挑战。     

Decadal Changes in Water Quality and Net Productivity of a Shallow Danish Estuary Following Significant Nutrient Reductions

We utilized an extensive data set (1977–2013) from a water quality monitoring program to investigate the recovery of a Danish estuary following large reductions in total phosphorus (TP) and total nitrogen (TN) loading. Monthly rates of net transport and biogeochemical transformation of dissolved inorganic nitrogen (DIN) and phosphorus (DIP) were computed in two basins of the estuary using a box model approach, and oxygen-based rates of net ecosystem production (NEP) were determined. Since 1990, nutrient loading was reduced by 58 % for nitrogen and 80 % for phosphorus, causing significant decreases in DIN (60 %) and DIP (85 %) concentrations. Reductions in nutrient loadings and concentrations reduced annual chlorophyll levels by 50 % in the inner estuary and improved Secchi depth by approximately 1 m during the same period, particularly in the summer period. In the outer, deeper region of the estuary trends in water quality was less evident. Improvements in the inner estuary were strongly coupled to declines in DIN. Thresholds of DIN and DIP concentrations limiting phytoplankton growth indicated that both regions of the estuary were nitrogen limited. NEP rates indicated the development of more net autotrophic conditions over time that were likely associated with higher benthic primary production stimulated by improved light conditions. Box model computations revealed a modest reduction in summer net production of DIP over time, despite the persistence of elevated fluxes for several years after external loads were reduced. Since the mid-1990s, nutrient loading and transformation were stable while nutrient concentrations continued to decline and water quality improved in the inner estuary. The oligotrophication trajectory involved an initial fast transformation and modest retention of nutrients followed by a gradual decline in the rate of improvement towards a new stable condition.     

Tidal pumping drives nutrient and dissolved organic matter dynamics in a Gulf of Mexico subterranean estuary

We hypothesize that nutrient cycling in a Gulf of Mexico subterranean estuary (STE) is fueled by oxygen and labile organic matter supplied by tidal pumping of seawater into the coastal aquifer. We estimate nutrient production rates using the standard estuarine model and a non-steady-state box model, separate nutrient fluxes associated with fresh and saline submarine groundwater discharge (SGD), and estimate offshore fluxes from radium isotope distributions. The results indicate a large variability in nutrient concentrations over tidal and seasonal time scales. At high tide, nutrient concentrations in shallow beach groundwater were low as a result of dilution caused by seawater recirculation. During ebb tide, the concentrations increased until they reached a maximum just before the next high tide. The dominant form of nitrogen was dissolved organic nitrogen (DON) in freshwater, nitrate in brackish waters, and ammonium in saline waters. Dissolved organic carbon (DOC) production was two-fold higher in the summer than in the winter, while nitrate and DON production were one order of magnitude higher. Oxic remineralization and denitrification most likely explain these patterns. Even though fresh SGD accounted for only ∼5% of total volumetric additions, it was an important pathway of nutrients as a result of biogeochemical inputs in the mixing zone. Fresh SGD transported ∼25% of DOC and ∼50% of total dissolved nitrogen inputs into the coastal ocean, with the remainder associated with a one-dimensional vertical seawater exchange process. While SGD volumetric inputs are similar seasonally, changes in the biogeochemical conditions of this coastal plain STE led to higher summertime SGD nutrient fluxes (40% higher for DOC and 60% higher for nitrogen in the summer compared to the winter). We suggest that coastal primary production and nutrient dynamics in the STE are linked.     

Fouling community of the Loxahatchee River estuary,Florida, 1980–81

Monthly growth of the fouling community at eight test panel sites in the Loxahatchee River Estuary was related to salinity and temperature. Growth was lowest in January 1981 (averaging 23 g per m², dry weight), and increased during spring and early summer with increasing water temperature. Maximum growth occurred during early or midsummer at upstream locations, before river or canal discharge substantially reduced salinity, and in late summer at downstream locations. Growth was greatest at salinities slightly less than that of seawater and decreased at salinities less than about 10‰. Growth was suppressed throughout the estuary in August 1981, probably because of the sudden decrease in temperature and salinity, and perhaps the increase in physical scouring, caused by runoff from Tropical Storm Dennis. Large loads of nutrients transported to the estuary from storm runoff, however, may have subsequently stimulated growth, which increased in September 1981 to the maximum for the year (averaging 683 g per m², dry weight).     

Seasonal changes in the abundance and composition of plant pigments in particulate organic carbon in the lower Mississippi and Pearl Rivers

Plant pigments in particulate organic carbon were examined in the lower Mississippi and Pearl Rivers (U.S.), along with physical variables and nutrients to study seasonal changes in the abundance and composition of phytoplankton. Water samples were collected monthly from September 2001 to August 2003 in the lower Mississippi River (MR; no samples were taken in February 2002) and from August 2001 to July 2003 in the Pearl River (PR). High concentrations of total suspended solids (TSS), nutrients, and chlorophylla (chla; dominated by diatoms) were observed in the lower MR. The smaller blackwater PR was characterized by lower nutrients and chla, higher ultraviolet absorbance, and a phytoplankton biomass dominated by chlorophytes. Chla concentrations in the lower MR was high in summer low-flow periods and also during interims of winter and spring, and did not couple with physical variables and nutrients, likely due to a combination of in situ production and inputs from reservoirs, navigation locks and oxbow lakes in the upper MR and Missouri River. Chla concentrations in the PR was only high in summer low-flow periods and were controlled by temperature and concentrations of chromophoric dissolved organic matter 9CDOM). The high, diatom-dominated phytoplankton biomass in the lower MR was likely the result of decreasing TSS (increased damming in the watershed) and increasing nutrients (enhanced agricultural runoff) over the past few decades. Lower phytoplankton biomass (dominated by chlorophytes) in the PR was likely linked with intense shading by CDOM and lower availability of nutrient inputs. An increase in the relative importance of phytoplankton biomass in large turbid rivers, such as the MR, could have significant effects on the age and lability of riverine organic matter entering the ocean, the stoichiometric balance of nutrients delivered to coastal margins, and the sequestration of atmospheric CO₂ in these dynamic regions.     

Seasonal Cycle of Phytoplankton Community Composition in the Coastal Upwelling System Off Central Oregon in 2009

Coastal upwelling in the northern California Current varies seasonally, with downwelling in winter and upwelling in summer, resulting in pronounced variability in hydrography, nutrients, phytoplankton biomass, and species composition. Winter was characterized by moderate concentrations of nitrate and silicate (averages of 10 and 18 μM, respectively) and low concentrations of chlorophyll a (Chl a). During the upwelling season, concentrations of the same nutrients ranged from near 0 μM to approximately 27 and 43 μM and Chl a 0.5?<?x?<?15 μg L^?1. During autumn, upwelling weakened and nutrient concentrations were reduced, but large phytoplankton blooms continued to occur. Variations in hydrography, nutrients, and phytoplankton also occurred within the upwelling season due to alternation of the winds between northerly (active upwelling) and southerly (relaxation of upwelling), on a 5- to 10-day time scale. Eleven blooms were observed, most of which occurred near the end of active upwelling events and during relaxation of upwelling. Nonmetric multidimensional scaling ordination of species composition of the microplankton revealed four distinct communities: a winter community, early upwelling and late upwelling season communities, and an autumn community. Diatoms (Asterionellopsis glacialis, Eucampia zodiacus, and several Chaetoceros, Thalassiosira, and Pseudo-nitzschia species) dominated early in the upwelling season, averaging 80 % of the phytoplankton biomass, and dinoflagellates dominated near the end of the upwelling season, averaging 68 % of the phytoplankton biomass. Dinoflagellates formed two monospecific blooms—Prorocentrum gracile in late summer and Akashiwo sanguinea in autumn. Changes in community composition were correlated with bottom temperature and salinity (representing seasonal variability) and sea surface salinity (representing within-season event-scale variability in upwelling).     

Phytoplankton blooms and nitrogen productivity in San Francisco Bay

San Francisco Bay has been considered an HNLC or HNLG (high nutrient low chlorophyll or low growth) region with nonlimiting concentrations of inorganic nutrients yet low standing stocks of phytoplankton. Most of the studies leading to this conclusion come from the South Bay and little is known about nutrient processes and phytoplankton productivity in the northern and central parts of the estuary. Data collected over 3 yr (1999–2003) in Suisun, San Pablo, and Central Bays describe the availability of dissolved inorganic nitrogen (DIN), silicate, and phosphate and the seasonal variability in phytoplankton abundance. Rate measurements of fractionated nitrogen productivity provide the relative contributions of different forms of DIN (ammonium and nitrate) and different sized phytoplankton to the development of seasonal phytoplankton blooms. Regional differences in bloom dynamics are observed with Suisun Bay, the least saline, highest nutrient, most turbid region having less phytoplankton biomass and productivity than San Pablo and Central Bays, except in the abnormally wet spring of 2000. Spring blooms in San Francisco Bay are driven primarily by high rates of nitrate uptake by larger phytoplankton cells following a period of increased ammonium uptake that depletes the ambient ammonium. The smaller occasional fall blooms are apparently flueled mostly by ammonium uptake by small sized phytoplankton. The data suggest that the HNLC condition in the northern and central parts of San Francisco Bay is due primarily to light availability modulated by the interaction between ammonium and nitrate, and the relative amounts of the two forms of the DIN pool available to the phytoplankton.     

Chemical variability in the Sacramento River and in Northern San Francisco Bay

Specific conductance and concentrations of alkalinity, dissolved silica, nitrate, and ammonium were measured daily in the Sacramento River flow to northern San Francisco Bay during the rainfall seasons of 1983 and 1984 (high flow) and during late summer and early fall of 1984 (low flow). Flow and concentrations of chemical species varied in response to storm events during high flow, but flow was more variable than concentrations of chemical species. Runoff from agriculturally developed areas appeared to increase specific conductance and concentrations of alkalinity during high flow. During low flow, inputs of agricultural tailwaters caused variations in concentrations of alkalinity and dissolved silica. Dilution of municipal waste by river flow caused variability in concentrations of ammonium during both high flow and low flow. Distributions of alkalinity, dissolved silica, nitrate, and ammonium were measured in northern San Francisco Bay during late summer and fall of 1984. Changes in distributions of alkalinity in the estuary were caused by variations in alkalinity in the Sacramento River. Changes in distributions of dissolved silica, nitrate, and ammonium appeared to be primarily related to variations in supply by the river and removal by phytoplankton. Effects of removal by phytoplankton were large for ammonium and dissolved silica, but appeared relatively small for nitrate.     

Coupling Between the Coastal Ocean and Yaquina Bay,Oregon: Importance of Oceanic Inputs Relative to Other Nitrogen Sources

Understanding of the role of oceanic input in nutrient loadings is important for understanding nutrient and phytoplankton dynamics in estuaries adjacent to coastal upwelling regions as well as determining the natural background conditions. We examined the nitrogen sources to Yaquina Estuary (Oregon, USA) as well as the relationships between physical forcing and gross oceanic input of nutrients and phytoplankton. The ocean is the dominant source of dissolved inorganic nitrogen (DIN) and phosphate to the lower portion of Yaquina Bay during the dry season (May through October). During this time interval, high levels of dissolved inorganic nitrogen (primarily in the form of nitrate) and phosphate entering the estuary lag upwelling favorable winds by 2 days. The nitrate and phosphate levels entering the bay associated with coastal upwelling are correlated with the wind stress integrated over times scales of 4–6 days. In addition, there is a significant import of chlorophyll a to the bay from the coastal ocean region, particularly during July and August. Variations in flood-tide chlorophyll a lag upwelling favorable winds by 6 days, suggesting that it takes this amount of time for phytoplankton to utilize the recently upwelled nitrogen and be transported across the shelf into the estuary. Variations in water properties determined by ocean conditions propagate approximately 11–13 km into the estuary. Comparison of nitrogen sources to Yaquina Bay shows that the ocean is the dominant source during the dry season (May to October) and the river is the dominant source during the wet season with watershed nitrogen inputs primarily associated with nitrogen fixation on forest lands.