Feeding habits of red drum (Sciaenops ocellatus) in Galveston Bay, Texas: Seasonal diet variation and predator-prey size relationships

Feeding habits, seasonal diet variation, and predator size-prey size relationships of red drum (Sciaenops ocellatus) were investigated in Galveston Bay, Texas through stomach contents analysis. A total of 598 red drum ranging from 291–763 mm total length were collected and their stomach contents analyzed during fall 1997 and spring 1998. The diet of red drum showed significant seasonal patterns, and was dominated by white shrimp (Penaeus setiferus) during fall and gulf menhaden (Brevoortia patronus) during spring. Blue crab (Callinectes sapidus) was an important component of red drum diets during both seasons. Significant differences existed between prey types consumed during fall and spring as red drum diet reflected seasonal variation in prey availability. Predictive regression equations were generated to estimate original carapace width of blue crabs from several measurements taken from carapace fragments recovered in red drum stomachs. Regressions were highly significant (r²>0.97) and increased the number of blue crabs with size information nearly three fold. Predator size-prey size relationships were determined for red drum feeding on white shrimp, gulf menhaden, and blue crab. Although regression slopes were statistically significant, prey sizes increased only slightly with increasing red drum size. Comparisons of prey sizes consumed by red drum with sizes occurring in the field indicate that red drum feed in nearshore shallow water habitats, which serve as nursery areas for many juvenile fishes and crustaceans. Our findings demonstrate that red drum feed on several prey species of commercial and recreational value and may have important effects on estuarine community structure.     

Trophic relationships of three sunfishes (Lepomis spp.) in an estuarine bayou

We examined ontogenetic, interspecific, and seasonal trophic patterns among sympatric sunfish species, redspotted sunfish,Lepomis miniatus; redear sunfish,Lepomis microlophus; and bluegill,Lepomis macrochirus, in an estuarine bayou. In particular we studied these feeding patterns in relation to relative abundances of prey from different benthic feeding habitats. All three sunfishes showed ontogenetic divergence in their trophic niches, reflecting different ecomorphological specializations. Small fishes depended on zooplankton, whereas larger fishes of all three species shifted their diets to benthic macrofauna. A potential for trophic resource partitioning was reflected by dietary differences among the three sunfish species. One impalied mechanism for resource partitioning was feeding habitat, as redear sunfish frequently used sediment-associated prey, while bluegill showed greater use of water-column-associated prey, and redspotted sunfish often used SAV-associated prey. However, all three sunfishes apparently used each feeding habitat to some degree; and, trophic differences were more clearly based on prey type than on feeding habitat. Redear sunfish, which can crush hard-shelled prey, exhibited the most distinctive diet. An apparent seasonal shift in feeding habitat occurred in autumn/winter, as indicated by increased overlap between diets and SAV. This shift was facilitated by changes in the relative abundances of several common prey types between benthic habitats. The relative abuandance and use of freshwater and estuarine-derived prey also varied seasonally, suggesting a possible trophic benefit of consistent prey availability in the estuarine bayou.     

Food Habits of Large Nektonic Fishes: Trophic Linkages in Delaware Bay and the Adjacent Ocean

Fish diets play a critical role in our understanding of aquatic trophic dynamics and are an important component in developing ecosystem-based approaches to fisheries management. Although large nektonic fishes exert top-down predator effects on the food web and typically support viable commercial and recreational fisheries, little is known about the diet of this guild. We evaluated the diets (6327 stomachs) of four nektonic predatory fishes (Pomatomus saltatrix [78–395 mm], Cynoscion regalis [91–520 mm], Morone americana [156–361 mm], and Morone saxatilis [82–785 mm]) in Delaware Bay and in the adjacent ocean. To assess ontogenetic, geographic, and interspecific variation in diets, observations from individual fish stomachs were clustered into species-size class groups, and dietary overlap was estimated using multivariate analyses. A shift in diet composition, as well as diversity, occurred along the estuarine gradient and into the adjacent ocean. Some prey were shared by most predators, including some crustaceans (dominated by Callinectes sapidus, mysids, and Palaemonetes spp.), fundulids (dominated by Fundulus heteroclitus), engraulids (dominated by Anchoa mitchilli), and clupeids (dominated by Brevoortia tyrannus). However, inter- and intra-specific variation in diet was observed as well. In particular, M. americana consumed fewer engraulids and clupeids, and many more and diverse types of invertebrates, while P. saltatrix consumed more clupeids and less invertebrates. The lack of overlap in diet between the four predators evaluated, and between size groups for each predator, supports previous evidence that these groups feed in trophic guilds defined by species and by size within a species. The highly variable diets for these predators suggest high resolution spatial data are necessary in order to quantify their most important prey and their role in coastal ecosystems.     

Seasonal Diet Shifts and Overlap Between Two Sympatric Catfishes in an Estuarine Nursery

This study describes the seasonal feeding habits of different size classes of Cathorops spixii and Cathorops agassizii along an estuarine ecocline and the food overlap when different size classes occur together. These species were essentially zoobenthivorous, feeding mainly on Polychaeta Nereis sp., Copepoda Pseudodiaptomus acutus, Ostracoda Asterope sp., Gastropoda: Littorinidae, and Bivalvia Mytilus sp. and Anomalocardia brasiliana. However, during their life cycle and between different habitats and seasons, their trophic guild can change to zooplanktivore. The competition for resources was observed among C. spixii and C. agassizii, but was significantly reduced due to the seasonal diference in habitat use by different ontogenetic phases in the main channel of the estuary. The food niche separation was strongly influenced by environmental fluctuations, principally of salinity, resulting from rainfall and river inflow. High abundance of some preys, such as P. acutus (all estuary), Asterope sp. (upper and middle estuary), and Littorinidae (upper and lower estuary), could influence the significant diet overlap, principally during the rainy season, and call for more detailed studies of the benthic community structure. Moreover, dietary overlap was observed mainly between smaller sizes (intraspecific and/or interspecific) or between corresponding ontogenetic phases (interspecific), suggesting some differentiation in the diet in relation to the size class. Differences in prey type and size between the different ontogenetic phases of these ariids, principally among juveniles and adults, could be related to the size of the mouth, since adults are able to successfully capture larger preys or larger quantities of particular items.     

Seagrass patch characteristics alter direct and indirect interactions in a tritrophic estuarine food web

We used a mesocosm approach to examine how_ratch characteristics influenced predation and habitat selection in a tritrophic food web. Our experiments included juvenile red drum (Sciaenops ocellatus; RD), juvenile pinfish (Lagodon rhomboides; PF), and grass shrimp (Palaemonetes sp.; GS), members of a food web common in seagrass meadows of the northern Gulf of Mexico. We added an additional level of complexity to the experiment by including a predator that could feed at two different trophic levels. RD were top predators, PF were both prey items for RD and predators of GS, and GS were prey for RD and PF. We used 4 different artificial seagrass habitats that varied by size (0.049 and 0.203 m²) and shape (circular and stellate) to control for covariation between patch size and seagrass density. Predation on GS was measured in each habitat when PF, RD, and PF+RD were present, and predation on PF was measured when RD and RD+GS were present. Habitat selection by each of these 3 species was measured individually and in the presence of every other combination of the 3 species. Neither predation nor habitat selection were consistently influenced by patch characteristics (size, shape, or perimeter: area ratios) or the number of trophic levels. For GS, there was a significant negative relationship between patch size and predation rates in the GS+PF+RD treatment. Habitat selection by GS without the threat of predation suggested a preference for smaller habitats, but when in the presences of RD or RD+PF, GS preferred larger habitats. In predation experiments, PF predation by RD showed no significant relationships with patch characteristics or trophic structure. For our habitat selection experiments, PF preference was for larger habitats in the PF only and GS+PF+RD treatments. There were no significant relationships between patch size, shape, or trophic structure and RD habitat selection.     

Linking Habitat Use and Trophic Ecology of Spotted Seatrout (<Emphasis Type="Italic">Cynoscion nebulosus</Emphasis>) on a Restored Oyster Reef in a Subtropical Estuary

Predicting population- and ecosystem-level benefits of habitat restoration minimally requires an understanding of the link between the trophic ecology of a species and their use of a habitat. This study combined novel, non-lethal natural tracers of trophic ecology with acoustic tagging techniques to examine spatial and temporal patterns of habitat use of spotted seatrout Cynoscion nebulosus on Half Moon Reef (HMR), a recently restored oyster reef in Matagorda Bay, Texas. Forty-one spotted seatrout (408?±?25 mm total length) were captured at HMR, surgically implanted with acoustic transmitters, and monitored by an array of underwater listening stations from December 2015 to August 2016. Patterns of presence-absence on HMR were strongly influenced by water temperature, and to a lesser extent, salinity and tidal height. Overall, spotted seatrout residency to HMR was low, with fish being present on the reef 24% of days. When present, individual fish exhibited strong site-attachment to small portions of the reef. Residency to HMR increased significantly with size, while scale stable isotope analysis revealed fish exhibiting high residency to HMR occupied significantly smaller isotopic niches. If indeed smaller fish with decreased residency rely upon a wider range of prey items across multiple habitats than larger, more resident individuals, restored oyster reef habitat may be expected to primarily benefit larger spotted seatrout.     

Preliminary Examination of How Human-driven Freshwater Flow Alteration Affects Trophic Ecology of Juvenile Snook (<Emphasis Type="Italic">Centropomus undecimalis</Emphasis>) in Estuarine Creeks

Maintaining proper freshwater and marine inputs is essential for estuarine function. Alteration of freshwater flows into small tributaries that traverse the upland-estuarine margin may be especially problematic, e.g., by impacting the nursery areas for juvenile finfish and shellfish. We used stomach contents and stable isotope analysis (δ¹³C, δ¹⁵N) to examine effects of freshwater flow alterations on the trophic ecology of juvenile common snook (Centropomus undecimalis) in four mangrove creeks with different freshwater flow regimes. Diet diversity in less degraded creeks was greater than in more degraded creeks, and the importance (by % mass) of the top three preys was disproportionately higher in the more degraded creeks. Stable isotope measures of trophic diversity corroborate these trends, suggesting higher intraspecific trophic diversity in less degraded creeks. The difference in diet diversity of juvenile snook may be an indicator of an overall change in ecosystem function and these shifts in food web structure may affect the rate that juveniles of this and other species with similar habitat requirements successfully join the adult population.     

Juvenile Winter Flounder (<Emphasis Type="Italic">Pseudopleuronectes americanus</Emphasis>) and Summer Flounder (<Emphasis Type="Italic">Paralichthys dentatus</Emphasis>) Utilization of Southern New England Nurseries: Comparisons Among Estuarine,Tidal River,and Coastal Lagoon Shallow-Water Habitats

This study evaluated the relative importance of the Narragansett Bay estuary (RI and MA, USA), and associated tidal rivers and coastal lagoons, as nurseries for juvenile winter flounder, Pseudopleuronectes americanus, and summer flounder, Paralichthys dentatus. Winter flounder (WF) and summer flounder (SF) abundance and growth were measured from May to October (2009–2013) and served as indicators for the use and quality of shallow-water habitats (water depth <1.5–3.0 m). These bioindicators were then analyzed with respect to physiochemical conditions to determine the mechanisms underlying intraspecific habitat selection. WF and SF abundances were greatest in late May and June (maximum monthly mean?=?4.9 and 0.55 flounder/m² for WF and SF, respectively) and were significantly higher in the tidal rivers relative to the bay and lagoons. Habitat-related patterns in WF and SF abundance were primarily governed by their preferences for oligohaline (0.1–5 ppt) and mesohaline (6–18 ppt) waters, but also their respective avoidance of hypoxic conditions (<4 mg DO/L) and warm water temperatures (>25 °C). Flounder habitat usage was also positively related to sediment organic content, which may be due to these substrates having sufficiently high prey densities. WF growth rates (mean?=?0.25?±?0.14 mm/day) were negatively correlated with the abundance of conspecifics, whereas SF growth (mean?=?1.39?±?0.46 mm/day) was positively related to temperature and salinity. Also, contrary to expectations, flounder occupied habitats that offered no ostensible advantage in intraspecific growth rates. WF and SF exposed to low salinities in certain rivers likely experienced increased osmoregulatory costs, thereby reducing energy for somatic growth. Low-salinity habitats, however, may benefit flounder by providing refugia from predation or reduced competition with other estuarine fishes and macroinvertebrates. Examining WF and SF abundance and growth across each species’ broader geographic distribution revealed that southern New England habitats may constitute functionally significant nurseries. These results also indicated that juvenile SF have a geographic range extending further north than previously recognized.     

Integrating Multiple Natural Tags to Link Migration Patterns and Resource Partitioning Across a Subtropical Estuarine Gradient

Establishing links between migration patterns and trophic dynamics is paramount to ecological studies investigating the functional role habitats provide to resident and transient species. Natural tags in fishes, such as otolith chemistry and tissue stable isotopes, can help reconstruct previous environmental and dietary histories, although these approaches are rarely combined. A novel multiproxy natural tag approach was developed to estimate immigration patterns of juvenile Atlantic croaker Micropogonias undulatus, across contrasting salinity gradients in three subtropical estuaries of the western Gulf of Mexico. Juvenile young-of-year Atlantic croaker were collected along a latitudinal gradient that included positive, neutral, and negative estuaries, based on physicochemical (temperature, salinity, dissolved element) and isotopic (δ¹⁵N and δ¹³C) parameters. Otolith elemental chronologies of Sr/Ca and Ba/Ca were used to classify migratory types within each estuary, while tissue-specific isotope ratios revealed time since recent (liver~weeks) and longer term (muscle~months) diet shifts. Nitrogen isotopes in both liver and muscle tissues were highly correlated, suggesting tissue equilibrium and estuarine residence of at least 3 months, with geographic δ¹⁵N gradients reflecting the magnitude of anthropogenic nutrient enrichment within each estuary. Differences in isotopic equilibrium of muscle-liver δ¹³C values and variation in marginal edge otolith Sr/Ca and Ba/Ca suggested recent shifts in carbon source and habitat utilization, reflecting individualized movement across seascapes and connectivity of habitat mosaics. The multiproxy approach presented here identified diverse migration patterns and linked feeding and movement on regional (inter-estuary), local (intra-estuary), and individual scales to improve our understanding of habitat function across estuarine gradients.     

Spatial Distribution–Abundance Relationships in Juvenile (Age 0) Red Drum (<Emphasis Type="Italic">Sciaenops ocellatus</Emphasis>) and Spotted Seatrout (<Emphasis Type="Italic">Cynoscion nebulosus</Emphasis>). I: Influence of Freshwater Inflow

We examined relationships between freshwater inflow and population abundance and distribution of two size classes (15–50 mm Standard Length and 51–100 mm SL) of spotted seatrout (Cynoscion nebulosus) and red drum (Sciaenops ocellatus) over our 13-year study covering shallow waters of Tampa Bay and several adjacent rivers. Juveniles of seatrout were relatively abundant most years and broadly distributed primarily in the bay. Freshwater inflow was positively related to spatial distribution and abundance of smaller juveniles of seatrout, yet it was unrelated to the larger size class. Red drum juveniles were less abundant and narrowly distributed primarily within the rivers. Lower portions of the Alafia, Little Manatee, and Manatee Rivers—a combined area comprising only 2 % of the study area—contained 40–96 % of the annual population. Freshwater inflow was positively related to population distribution and abundance of larger red drum suggesting that reductions in inflow can reduce both habitat area and populations. Inflow was related to abundance but not distribution of the smaller red drum suggesting that inflow may increase habitat quality but perhaps not quantity at this earlier growth stage. Comparing spatial and population dynamics of multiple species can help prioritize them for conservation and management issues, such as freshwater inflow regulation. Reductions in inflow reduce populations and spatial distribution of at least one juvenile life stage of these two fishery species. Due to their narrow spatial distribution in the rivers, juveniles of red drum appear to be particularly vulnerable to modification of the riverine environment.     

Nestling diets of coexisting salt marsh sparrows: Opportunism in a food-rich environment

The saltmarsh sharp-tailed sparrow (Ammodramus caudacutus) and the morphologically similar seaside sparrow (Ammodramus maritimus) occur together in Atlantic coast salt marshes. Over 2 yr we examined food exploitation patterns to gain an understanding of how these species coexist and to characterize the trophic conditions that allow the maintenance of different mating systems within the same habitat. In the promiscuous saltmarsh sharp-tailed sparrow, only females feed the young, while the young of the socially monogramous seaside sparrow are fed by both parents. To determine dietary patterns, we used a nonlethal method (throat constriction) to obtain food samples from nestlings. Resource states were determined by sweep-netting the vegetation and by taking cores from the marsh surface. Based on volume, the same 4 prey groups (flies, amphipods, grasshoppers, moths) composed > 80% of each species diet. The main food of both sparrows was adult and juvenile (larval and pupal) soldier flies (Stratiomyidae:Odontomyia microstomata). Measures of dietary overlap, based on resource states, indicated that nestling diets did not differ between species on a seasonal basis or over 2-wk intervals. As the season progressed, each species tracked in parallel changes in resource abundance. Diets did not diverge from what was expected if food was exploited randomly; diets frequently overlapped significantly more than expected. Interspecific resource-use patterns were congruent over 2 yr. Based on the results of this study, and on an evaluation of hypotheses based on life history information from previously published work, we conclude that food usually is not limiting for these sparrows and that resource abundance has fostered behavioral and dietary opportunism.     

Temporal Variation in the Trophic Levels of Secondary Consumers in a Mediterranean Coastal Lagoon (Cabras Lagoon,Italy)

Trophic levels (TLs) of fish were estimated on three sampling dates (March, May, and August 2006) for different fish sizes in the Cabras Lagoon (Sardinia, Italy). A temporal TL variation for Atherina boyeri, Gobius niger, and Engraulis encrasicolus was observed. In March and May, the TL ranged from 3.3 to 3.4, characterizing these species as secondary consumers, while in August, this range moved to between 3.7 and 3.8, indicating a TL shift towards tertiary consumers. For Liza ramada, TL was consistently lower in small individuals (mean TL 2.5) than in larger individuals (mean TL 3.0). Increased TL of the fish species A. boyeri, G. niger, and E. encrasicolus in August was consistent with the seasonal changes in the macrobenthic assemblage in this system, with a dominance of primary consumers (benthic deposit feeders) in winter–spring and a dominance of secondary consumers (the nereidids Alitta succinea and Hediste diversicolor) in summer. These fish species took advantage of the high availability of nereidids leading to a rise in their TL values. Furthermore, the increase of TL with size of L. ramada, the most economically valuable fish species in the Cabras Lagoon, indicated an ontogenetic diet shift, the juveniles being omnivorous, while the adults being secondary consumers. We conclude that variability in the trophic levels of fish due to species traits, ontogenetic diet shifts, and variation in prey availability should be taken into account to further understand the food web structure of coastal lagoons.     

Trophic Relationships of a Marsh Bird Differ Between Gulf Coast Estuaries

Much of North America’s tidal marsh habitat has been significantly altered by both natural and man-made processes. Thus, there is a need to understand the trophic ecology of organisms endemic to these ecosystems. We applied carbon (δ ¹³C) and nitrogen (δ ¹⁵N) stable isotope analysis, along with isotope mixing models, to egg yolk, liver, and muscle tissues of clapper rails (Rallus longirostris) and their likely prey items. This analysis enabled us to explore variation in trophic niche and diet composition in this important marsh bird in two northern Gulf of Mexico tidal marshes that are river and ocean-dominated. For the river-associated estuary, δ ¹³C and δ ¹⁵N of egg yolks, liver, and pectoral muscle tissue samples provided evidence that clapper rails maintained a similar diet during both the winter and the breeding season. A trophic link between C₃ primary productivity and the clapper rail’s diet was also indicated as the δ ¹³C of clapper rail egg yolks related negatively with the aerial cover of C₃ macrophytes. Clapper rails from the ocean-dominated estuary had a narrower trophic niche and appeared to be utilizing marine resources, particularly, based on modeling of liver stable isotope values. Variation in stable isotope values between egg yolk and liver/muscle in both systems suggests that endogenous resources are important for egg production in clapper rails. These results demonstrate that diet composition, prey source, and niche width of clapper rails can vary significantly across different estuaries and appear to be influenced by hydrological conditions.     

Seasonal Variation in Guild Structure of the Puget Sound Demersal Fish Community

Identification of food web linkages is a major aim in ecology because it provides basic information on trophic flows and the potential for interspecific interactions. In addition, policy and restoration measures mandated to conform to ecosystem-based management principals can benefit from information on temporal and spatial variability in community-level interactions. Here, we analyzed guild structure of the demersal fish assemblage in Puget Sound, WA, a temperate estuarine system on the US west coast. Using diet information from 2,401 stomachs collected across three seasons (fall, winter, and summer), we identified guild membership for 21 fish species, examined seasonal guild switching, and tested for seasonal shifts in predation and for differences in the degree of diet overlap at the assemblage level. We accounted for ontogenetic variation in diet by dividing species into large (L) and small (S) size classes when appropriate. Using cluster analysis and a permutation approach, we identified seven significant guilds that were typified by predation on benthic invertebrates, pelagic invertebrates, and piscivory. Of the 18 species with more than one season of diet information, six switched guilds (Pacific sanddab L, sturgeon poacher, Pacific tomcod S, speckled sanddab, rex sole, and rock sole S). At the assemblage level, we tested for seasonal differences in prey use between seasons by performing an analysis of similarities based on Bray–Curtis diet similarities and found no significant difference. However, diet overlap was significantly higher in the summer than the fall and winter (with summer > fall > winter) indicating that diets within the assemblage converged in the summer. These results indicate that analyses of guild structure and diet overlap can reveal seasonal variation in community trophic structure and highlight intra-annual food web variation in the Puget Sound demersal fish community.     

Seasonal Fisheries Changes in Low-Rainfall Mangrove Ecosystems of Iran

To determine the role of mangroves for fisheries in the arid region of the Persian Gulf, we investigated fish community structure and trophic diversity in intertidal creeks with and without mangroves. Fish community abundances and biomass were compared across habitats and seasons. To identify variations in overall community trophic niches among habitats and seasons, we measured niches with size-corrected standard ellipse areas (SEA_c) calculated from C and N stable isotope values. Although there was a slightly greater species richness occurred in mangrove creeks, we found a general similarity in the diversity patterns in creeks with and without mangroves. Also, there were no consistent differences in fish abundance or biomass for mangrove vs. non-mangrove fish collections. Community trophic diversity measured as SEA_c also showed no significant difference between mangrove and non-mangrove sites. Instead, strong seasonal patterns were observed in the fish assemblages. Winter samples had consistently higher fish abundance and biomass than summer samples. Winter SEA_c values were significantly higher, indicating that the fish community had a larger isotopic niche in winter than summer. Overall, we found that seasonality was much stronger than habitat in determining fish community structure and trophic diversity in the mangrove and non-mangrove ecosystems of Qeshm Island, Iran.     

Direct and Indirect Interactions Between Lower Estuarine Mangrove and Saltmarsh Habitats and a Commercially Important Penaeid Shrimp

Vegetated habitats in estuaries may provide a structural refuge and food supply in the same place, but benefits are also derived where a productive food source and suitable habitat are adjacent to each other. Quantifying these relationships is fundamental to understanding the structural and functional characteristics of estuarine ecosystems and for informing management actions. Effective juvenile habitat (habitat that contributes greater-than-average numbers of recruits to the adult population), recruitment patterns and trophic relationships were studied for Eastern King Prawn (Penaeus plebejus) in the lower Clarence River estuary, New South Wales, between 2014 and 2016. Effective juvenile habitat was identified in both the north arm and main river channel of the estuary, and these areas also supported a higher abundance of juvenile prawns. There was minimal recruitment to the southern channels of the estuary, possibly due to reduced connectivity with the incoming tide arising from a rock wall. Trophic relationships in parts of the lower estuary were evaluated using stable isotopes, and saltmarsh grass (Sporobolus virginicus) was the dominant primary producer supporting juvenile Eastern King Prawn productivity across the area. Mangroves were of minimal importance, and seagrass cover was minimal in the area studied. The patterns observed indicate that nursery function of different areas within the lower estuary is a product of connectivity, recruitment and nutrition derived from primary productivity of vascular plants. Habitats within the lower Clarence River estuary have seen substantial degradation over decadal time scales, and the implications of our findings for targeting future habitat repair are discussed.     

Wetland Loss,Juvenile Salmon Foraging Performance,and Density Dependence in Pacific Northwest Estuaries

During the transition of juveniles from fresh water to estuarine and coastal environments, the survival of Pacific salmon (Oncorhynchus spp.) can be strongly size selective and cohort abundance is partly determined at this stage. Because quantity and quality of food influence juvenile salmon growth, high rates of prey and energy acquisition during estuarine residence are important for survival. Human activities may have affected the foraging performance of juvenile salmon in estuaries by reducing the area of wetlands and by altering the abundance of salmon. To improve our understanding of the effects of wetland loss and salmon density on juvenile salmon foraging performance and diet composition in estuaries, we assembled Chinook salmon (Oncorhynchus tshawytscha) diet and density data from nine US Pacific Northwest estuaries across a gradient of wetland loss. We evaluated the influence of wetland loss and density on juvenile Chinook salmon instantaneous ration and energy ration, two measures of foraging performance, and whether the effect of density varied among estuaries with different levels of wetland loss. We also assessed the influence of wetland loss and other explanatory variables on salmon diet composition. There was no evidence of a direct effect of wetland loss on juvenile salmon foraging performance, but wetland loss appeared to mediate the effect of density on salmon foraging performance and alter salmon diet composition. Specifically, density had no effect on foraging performance in the estuaries with less than 50 % wetland loss but had a negative effect on foraging performance in the estuaries with greater than 50 % wetland loss. These results suggest that habitat loss may interact with density to constrain the foraging performance of juvenile Chinook salmon, and ultimately their growth, during a life history stage when survival can be positively correlated with growth and size.     

Dietary Analysis of Marine Fish Species: Enhancing the Detection of Prey-Specific DNA Sequences via High-Throughput Sequencing Using Blocking Primers

Dietary studies of fish can enhance our understanding of predator-prey interactions and provide important insights into complex marine food webs. In this study, we performed dietary analyses of three commercially important fish species in South China: Acanthopagrus latus, Pampus argenteus, and Scomberomorus commerson. Two distinct fragments of the mitochondrial cytochrome c oxidase I (mtCOI) gene, a small (130 bp) and large (300 bp) amplicon, were amplified from the DNA extracted from the gut contents in the presence of blocking primers designed to inhibit the amplification of predator-specific DNA. The amplicons from each predator species were tagged with a unique indexing bar code and sequenced using the Illumina MiSeq platform. Our results showed that the three fish species consumed a wide variety of prey, including jellyfish, copepods, crustaceans, and fish. Seasonal variations in prey composition and species-selective predation were observed. Our approach of combining next-generation sequencing with blocking primers greatly enhanced the speed and resolution of the dietary analyses in marine fishes and could provide novel insights into marine ecosystems.     

Food habits of red drum and spotted seatrout in a restored mangrove impoundment

Benthic resource utilization by, red drum (Sciaenops ocellatus) and spotted seatrout (Cynoscion nebulosus) was studied in a restored, mangrove-rimmed impoundment (Cabbagehead Bayou) of Upper Tampa Bay, Florida, and in a nearby, natural site of unaltered tidal regime (Double Branch Bay). Diets of fish captured from August 1990 to May 1992 were determined from stomach content analysis. Simultaneously, food availability was evaluated by sampling benthic macroinvertebrates, mobile decapods, and small fish. Red drum and spotted seatrout utilized the restored habitat 1 yr after it was opened to tidal influence. Both species also were collected in the natural mangrove. Although there were noted differences in benthic assemblages between the two sites, red drum and spotted seatrout exhibited flexibility in diet, feeding on abundant and accessible prey. The high abundance of microcrustacea, such as amphipods, on detritus accumulated in the restored habitat constituted a main food resource for both fish species. Major food items in the diet of small (<200 mm) red drum were amphipods, mysids, and nereid and arenicolid polychaetes. Large (200–590 mm) red drum fed on polychaetes, xanthid crabs, palaemonid shrimp, and small fishes. Spotted seatrout preyed primarily upon mysids, shrimp, and small fishes, and to a lesser extent, upon a nereid polychaete. Our findings on fish feeding in a restored mangrove impoundment indicated that the detrital-associated benthic community is utilized by reinvading fish within a short time period, suggesting that not only habitat but food resources were augmented by the reopening of this wetland.     

The Comparison of δ<Superscript>13</Superscript>C Values of a Deposit- and a Suspension-Feeder Bio-Indicates Benthic vs. Pelagic Couplings and Trophic Status in Contrasted Coastal Ecosystems

δ¹³C and δ¹⁵N values of two generalists primary consumers, a strict deposit-feeder polychaete (Arenicola marina), and a strict suspension-feeder bivalve (Crassostrea gigas), were investigated to typify the trophic functioning of two contrasted marine coastal ecosystems (eutrophic and mesotrophic, east and west Cotentin peninsula, respectively, English Channel, Normandy, France). On average, δ¹³C and δ¹⁵N values of lugworms mirrored those of sediment organic matter (SOM), whereas δ¹³C and δ¹⁵N of oysters mirrored those of suspended particulate organic matter (SPOM). δ¹³C values of the two species displayed significant differences on the west coast (mesotrophic) contrary to the east coast (eutrophic; significant interactions). δ¹⁵N values differed only between sites and not between species. Diet of A. marina relied exclusively on microphytobenthos (MPB) and detritus of macroalgae (ULV) on the mesotrophic coast, whereas diet of C. gigas relied mainly on SPOM. Conversely, on the eutrophic ecosystem (the east coast), both species displayed the same diet, which was a mixture of pelagic sources (SPOM), benthic sources (MPB and ULV) and to a lesser extent riverine particulate organic matter (rPOM). These results were explained by the intensity of benthic vs. pelagic couplings (i.e. benthic-pelagic and pelagic-benthic) which differed in the two ecosystems. Low trophic coupling occurred on the mesotrophic (west) coast, whereas benthic-pelagic (SOM resuspension) and pelagic-benthic (settling of SPOM such as phytoplankton blooms) couplings were typified on the eutrophic (east) coast. This higher particulate organic matter (POM) pelagic-benthic coupling on the east coast was probably enhanced by nutrient enrichment caused by eutrophication. Comparison of δ¹³C ratios of both the strict deposit-feeder (e.g. A. marina) and the strict suspension-feeder (e.g. C. gigas) was then proposed as a bio-indicator of the trophic status and of POM benthic vs. pelagic couplings of soft-bottom coastal ecosystems.