Higher species diversity occurs in more fertile habitats without fertilizer disturbance in an alpine natural grassland community

Are there some relationships among species diversity and soil chemical properties of high altitude natural grasslands？ Plant community composition and chemical properties of soil samples were compared to investigate the relationship between soil and species diversity, and the richness in Tibetan alpine grasslands. Results showed that species diversity was significantly positively related to soil organic matter （SOM）, total nitrogen （TN）, available nitrogen （AN）, total phosphorus （TP）, available phosphorus （AP）, and available potassium （AK） in the high alpine grasslands. Margalefs species richness index was also significantly positively related to SOM, TN, AN, and TP. Most soil chemical properties showed significantly positive correlation with species diversity and Margalef＇s richness index. Our results suggested that higher plant species richness index and diversity occurred in more fertile soil habitats in high altitude natural grassland community. In practice, fertilization management for the restoration of degraded grassland should be conducted with reference to the nutrient levels ofnatural grassland without the additional artificial fertilizer and with higher species-diversity and richness index.     

Pyrosequencing of nirS gene revealed spatial variation of denitrifying bacterial assemblages in response to wetland desertification at Tibet plateau

Amplicon sequencing of functional genes is a powerful technique to explore the diversity and abundance of microbes involved in biogeochemical processes. One such key process, denitrification, is of particular importance because it can transform nitrate(NO3-) to N2 gas that is released to the atmosphere. In nitrogen limited alpine wetlands, assessing bacterial denitrification under the stress of wetland desertification is fundamental to understand nutrients, especially nitrogen cycling in alpine wetlands, and thus imperative for the maintenance of healthy alpine wetland ecosystems. We applied amplicon sequencing of the nirS gene to analyze the response of denitrifying bacterial community to alpine wetland desertification in Zoige, China. Raw reads were processed for quality, translated with frameshift correction, and a total of 95,316 nirS gene sequences were used for rarefaction analysis, and 1011 OTUs were detected and used in downstream analysis. Compared to the pristine swamp soil, edaphic parameters including water content, organic carbon, total nitrogen, total phosphorous, available nitrogen, available phosphorous and potential denitrification rate were significantly decreased in the moderately degraded meadow soil and in severely degraded sandy soil. Diversity of the soil nirS-type denitrifying bacteria communities increased along the Zoige wetland desertification, and Proteobacteria and Chloroflexi were the dominant denitrifying bacterial species. Genus Cupriavidus(formerly Wautersia), Azoarcus, Azospira, Thiothrix, and Rhizobiales were significantly(P0.05) depleted along the wetland desertification succession. Soil available phosphorous was the key determinant of the composition of the nirS gene containing denitrifying bacterial communities. The proportion of depleted taxa increased along the desertification of the Zoige wetland, suggesting that wetland desertification created specific physicochemical conditions that decreased the microhabitats for bacterial denitrifiers and the denitrification related genetic diversity.     

Soil Cellulase Activity and Fungal Community Responses to Wetland Degradation in the Zoige Plateau,China

Four soil types(peat, marsh, meadow, and sandy) in the Zoige Plateau of China are associated with the severity of wetland degradation. The effects of wetland degradation on the structure and abundance of fungal communities and cellulase activity were assessed in these 4 soil types at 3 depths using DGGE(Denatured Gradient Gel Electrophoresis), q PCR(Quantitative Real-time PCR),and 3,5-dinitrosalicylic acid assays. Cellulase activity and abundance of the fungal community declined in parallel to the level of wetland degradation(from least to most disturbed). DGGE analysis indicated a major shift in composition of fungal communities among the4 soil types consistent with the level of degradation.Water content(WC), organic carbon(OC), total nitrogen(TN), total phosphorus(TP), available nitrogen(AN), and available phosphorus(AP) were strongly correlated with cellulase activity and the structure and abundance of the fungal community.The results indicate that soil physicochemical properties(WC, OC, TN, TP, AN, and AP), cellulase activity, and diversity and abundance of fungal communities are sensitive indicators of the relative level of wetland degradation. WC was the major factorinvolved in Zoige wetland degradation and lower WC levels contributed to declines in the abundance and diversity of the fungal community and reduction in cellulase activity.     

The Effect of Organic Carbon on Soil Bacterial Diversity in an Antarctic Lake Region

This study assessed the effects of changes in organic carbon content on soil bacterial community composition and diversity in the Antarctic Fildes Peninsula. 16 S rRNA gene sequencing was performed to investigate bacterial community composition. Firstly, we found that organic carbon(OrC) and nutrients showed an increasing trend in the lake area. Secondly, soil geochemistry changes affected microbial composition in the soil. Specifically, we found 3416 operational taxonomical units(OTUs) in 300 genera in five main phyla: Proteobacteria, Actinobacteria, Acidobacteria, Chloroflexi, and Bacteroidetes. Although the diversity was similar among the four sites, the composition was different. Among them, Hungateii content changed very significantly, from 16.67% to 33.33%. Canonical correspondence analysis showed that most measured geochemical factors were relevant in structuring microbiomes, and organic carbon concentration showed the highest correlation, followed by NO_(3-)~-N. Hungateii was significantly correlated with the content of organic carbon. Our finding suggested organic carbon played an important role in soil bacterial communities of the Antarctic coastal lake region.     

Metagenomic approach revealed effects of forest thinning on bacterial communities in the forest soil of Mt. Janggunbong,South Korea

The soil microbiome that plays important ecological roles in mountains and forests is influenced by anthropogenic and natural causes. Human activity, particularly harvesting or thinning, affects the soil microbiome in forests by altering environmental conditions, such as vegetation, microclimate, and soil physicochemical properties. The purpose of this study was to investigate the effects on forest thinning on the diversity and composition of the soil bacterial community. From next-generation sequencing results of the 16S rRNA gene, we examined differences in soil bacterial diversity and community composition before and after thinning at Mt. Janggunbong, South Korea. We identified 40 phyla, 103 classes, 192 orders, 412 families, 947 genera, and 3,145 species from the soil samples. Acidobacteria and Proteobacteria were the most dominant bacterial phyla in the forest soil of Mt. Janggunbong. Soil bacterial diversity measures (richness, Shannon diversity index, and evenness) at the phylum level increased after thinning, whereas species-level taxonomic richness decreased after thinning. Thinning provided new opportunities for bacterial species in Chloroflexi, Verrucomicrobia, Nitrospirae, and other nondominant bacterial taxa, especially for those not found in Mt. Janggunbong before thinning, to settle and adapt to the changing environment. Our results suggested that thinning affected the diversity and composition of soil bacterial communities in forests and mountains.     

Shifts of sediment bacterial community and respiration along a successional gradient in a typical karst plateau lake wetland(China)

Bacteria are important regulators of carbon cycling in lakes and are central to sediment ecosystem processes. However, the sediment microbial communities and their respiratory responses to the lake wetland succession are poorly understood. In this study, we collected sediment samples from four different succession points(the Potamogeton lucens zone, the Scirpus tabernaemontani zone, the Scirpus triqueter zone, and the Juncus effusus zone) in the Caohai Wetland of the Guizhou Plateau(China). The bacterial communities at these succession points were studied using a high-throughput sequencing approach. The sediment microbial respiration(SR) was measured using static chambers in the field and basal respiration(BR) was determined in the laboratory. The results show that the dominant bacterial taxa in the sediment was Proteobacteria(34.7%), Chloroflexi(17.8%), Bacteroidetes(7.3%), Acidobacteria(6.6%), and Cyanobacteria(6.1%). Principal coordinate analysis showed that the microbial community structure differs significantly at different sampling points along the successional gradient, indicating that the bacterial community structure is sensitive to the lake wetland succession. Different hydrological regimes and soil characteristics such as NH_4~+-N, Fe~(2+), Mn~(2+), and sediment organic carbon(SOC) content may be important factors responsible for the differences in the sediment microbial characteristics of the different successional stages in the Caohai wetland. Additionally, it was found that the SR increased significantly from the P. lucens zone to the J. effusus zone, but BR had the opposite response. The shifts in the bacterial community structure along the successional gradient may be the main reason for the observed differences in sediment respiration.     

福州市农田土壤养分空间变异特征

研究农田土壤养分空间分布特征及变异规律,分析地形因子对土壤养分空间分布的影响,对土壤养分的有效利用与管理具有重要意义。本文采用GIS和地统计学相结合的方法,揭示东南丘陵区福州市农田土壤养分（有机质、碱解氮、有效磷和速效钾）的空间分布特征和变异规律,并进一步探讨土壤养分含量与地形因子（地形起伏度、高程、地形湿度指数、沉积运输指数和坡度）之间的相关性。结果表明：福州市农田有机质、碱解氮、有效磷和速效钾含量范围分别为1.10~89.5 g/kg、 1.00~461 mg/kg、0.300~298 mg/kg、和4.00~399 mg/kg,其变异系数范围为35.3%~99.0%,均属于中等变异水平;区域内耕地土壤养分存在明显的空间丰缺差异,大部分地区有机质和有效磷含量较为丰富,碱解氮含量处于中等偏上水平,速效钾含量相对较低;有机质、碱解氮、有效磷和速效钾的块金系数分别为32.0%、37.3%、50.0%和50.0%,均呈中等强度空间自相关,表明同时受到结构和随机因素控制;有机质和碱解氮空间自相关尺度较大,且在步长小于0.3 km时,各方向（0°、45°、90°和135°）变化平稳,为各向同性,而有效磷和速效钾变程较小,且各方向变化较复杂,为各向异性。这些结果表明,政府需加强施肥指导,保持氮肥施用量的同时,合理增加钾肥,适当降低有机肥和磷肥施用。此外,在后续调查采样时,样点布设要考虑密度和方向性,适当加密有效磷和速效钾的采样,而有机质和碱解氮采样可以在此基础上适当减少样点。     

Variations of bacterial and fungal communities along a primary successional chronosequence in the Hailuogou glacier retreat area (Gongga Mountain,SW China)

New terrestrial habitats have emerged and a primary succession has developed in the retreat area(29°34'N, 102°00'E, 2951–2886 m) after the retreat of the Hailuogou glacier. To investigate soil microbial changes along the primary successional chronosequence, mixed soil samples were collected at six sites at different ages(2 young sites, 2 mid-aged sites, and 2 old sites). The RNA was extracted and amplified. Bacterial 16 S r RNA and fungal 18 S r RNA were analyzed using high-throughput 454 pyrosequencing analysis. Overall, pyrosequencing showed that Proteobacteria, Acidobacteria, Bacteroidetes and Actinobacteria were the main bacterial phyla, and the fungal communities were strongly dominated by the phyla Ascomycota and Basidiomycota in the retreat area. The Shannon diversity index(Hshannon) of bacteria was 6.5 – 7.9, and that of fungi was 2.2 – 4.1 in these sites. For the bacterial communities, diversity and evenness values were highest on the mid-age sites and wererelatively low on the young and old sites. A similar trend was observed for the fungal communities. In contrast, soil properties showed significant linear distributional trends(increase or decrease) with the age of the site. Combining the linear change patterns of soil properties, the highest values of bacterial and fungal evenness and diversity in the mid-aged sites indicated that there was less environmental stress and more niches for microbial communities in the middle successional stage compare with other stages. In addition, our analysis showed that microbial communities were the main drivers that build a soil organic matter pool to expedite pedogenesis for ecosystem succession. This primary succession in the Hailuogou glacier retreat area is developing rapidly compared with that in other glacier retreats.     

Effects of wetland utilization change on spatial distribution of soil nematodes in Heihe River Basin,Northwest China

The first account of the effects of wetland reclamation on soil nematode assemblages were provided, three sites in Heihe River Basin of Northwest China, that is grass wetland(GW), Tamarix chinensis wetland(TW) and crop wetland(CW) treatments, were compared. Results showed that the majority of soil nematodes were presented in the 0–20 cm soil layers in CW treatments, followed by in the 20–40 cm and 40–60 cm layers in GW treatments. Plant-feeding nametodes were the most abundant trophic groups in each treatment, where GW(91.0%) TW(88.1%) CW(53.5%). Generic richness(GR) was lower in the TW(16) than that in GW(23) and CW(25). The combination of enrichment index(EI) and structure index(SI) showed that the soil food web in GW was more structured, and those in TW was stressed, while the enrichment soil food web was presented in the CW treatment. Several ecological indices which reflected soil community structure, diversity, Shannon-Weaver diversity(H′), Evenness(J′), Richness(GR) and modified maturity index(MMI) were found to be effective for assessing the response of soil namatode communities to soil of saline wetland reclamation. Furthermore, saline wetland reclamation also exerted great influence on the soil physical and chemical properties(p H, Electric conductivity(EC), Total organic carbon(TOC), Total nitrogen(Total-N) and Nitrate Nitrogen(N-NO3–)). These results indicated that the wetland reclamation had significantly effects on soil nematode community structure and soil properties in this study.     

山东省临沭县北部土壤养分特征及综合肥力评价

在山东省临沭县北部农耕区进行耕层土壤样品采集,并测定土壤pH、有机质、全量及速效氮磷钾等养分指标来表征土壤肥力,运用因子分析法、聚类分析法计算出所有样本土壤养分综合评价值并进行等级划分来评价土壤肥力。结果表明临沭县北部土壤酸化严重,有机质和全氮、速效钾含量较低,全钾、全磷、碱解氮、速效磷比较丰富。因子分析显示TN、OM、AK、AP、TP、pH是影响临沭县北部土壤养分综合状况的主要因素。临沭县北部土壤肥力水平偏低;土壤养分综合评价值(IFI)具体表现为：郑山街道>青云镇>玉山镇>临沭街道>蛟龙镇。     

Effects of Reclamation on Soil Carbon and Nitrogen in Coastal Wetlands of Liaohe River Delta,China

To evaluate the influence of wetland reclamation on vertical distribution of carbon and nitrogen in coastal wetland soils, we measured the soil organic carbon(SOC), soil total nitrogen(STN) and selected soil properties at five sampling plots(reed marsh, paddy field, corn field, forest land and oil-polluted wetland) in the Liaohe River estuary in September 2013. The results showed that reclamation significantly changed the contents of SOC and STN in the Liaohe River estuary(P 0.001). The SOC concentrations were in the order: oil-polluted wetland corn field paddy field forest land reed marsh, with mean values of 52.17, 13.14, 11.46, 6.44 and 6.16 g/kg, respectively. STN followed a similar order as SOC, with mean values of 1351.14, 741.04, 632.32, 496.17 and 390.90 mg/kg, respectively. Interaction of reclamation types and soil depth had significant effects on SOC and STN, while soil depth had significant effects on SOC, but not on STN. The contents of SOC and STN were negatively correlated with pH and redox potential(Eh) in reed marsh and corn field, while the SOC and STN in paddy field had positive correlations with electrical conductivity(EC). Dissolved organic carbon(DOC), ammonium nitrogen(NH_4~+-N) and nitrate nitrogen(NO_3~–-N) were also significantly changed by human activities. NH_4~+-N and NO_3~–-N increased to different degrees, and forest land had the highest NO_3~–-N concentration and lowest DOC concentration, which could have been caused by differences in soil aeration and fertilization. Overall, the results indicate that reed harvest increased soil carbon and nitrogen release in the Liaohe River Estuary, while oil pollution significantly increased the SOC and STN; however, these cannot be used as indicators of soil fertility and quality because of the serious oil pollution.     

氮钾配施对生姜产量和砂姜黑土肥力的效应

研究了淮北平原砂姜黑土地区生姜氮钾配施的增产效应和对土壤养分的影响。结果表 明:氮钾配施可以大幅度提高生姜的产量,施钾的增产幅度,柴姜为15.3%～58.4%,平均增产率 为35.8%;狮子头姜产量提高18.2%～46.9%,平均增产28.7%。增施氮钾肥可有效提高土壤有 机质、全N、有效P、速效K、缓效K、有效Ca和有效Mg含量,降低NO3-盐含量,促使土壤pH趋于 中性,对全P和碱解N含量影响较小。土壤N素和P素大量盈余,不施钾时土壤K亏损严重,施钾 处理土壤钾基本上处于盈余状态,有利于维持和提高土壤肥力。     

Vertical patterns in plant diversity and their relations with environmental factors on the southern slope of the Tianshan Mountains (middle section) in Xinjiang (China)

The investigation of distribution patterns of species diversity is significant for successful biodiversity conservation. The spatial patterns of vegetation and different life-forms species diversity along an elevation gradient in the middle section of the southern slope of the Tianshan Mountains in Xinjiang, China were explored, using the detrended canonical correspondence analysis(DCCA) and the generalized additive model(GAM) methods based on a field survey of 53 sampling plots. In this work 158 species of seed plants were recorded, including 141 herbaceous, 14 shrub, and 2 tree species, in which the woody plants are very limited. 53 sampling plots were classified into 9 major plant communities. The results indicate that the herb communities were the most sensitive to changes in elevation gradient. The diversity indices of the community as a whole presented bimodal patterns. The peak values for the species diversities were found in the transition region between mountain steppe desert and mountain desert steppe(2,200–2,300m), and in the alpine grassland region(2,900–3,100m), while maximum species diversities were in the areas of intermediate environmental gradient. The main environmental factors on the distribution patterns in plant diversity were the elevation, soil water, total nitrogen, available nitrogen, organic matter, and total salt. The response tendency of the four diversity indices for the whole community to the soil environment was the same as that of the herb layers.     

Effects of wetland vegetation on soil microbial composition: A case study in Tumen River Basin,Northeast China

Hydrology plays a dominant role in wetland plant distribution and microbial composition, but few studies explicitly attempted to relate the linkage between wetland vegetation and microbial community. The present study consisted of five wetland plant communities along three adjacent flood gradients zones (zone 1 dominated by Carex appendiculat, zone 2 dominated by Eleocharis ovate, and zone 3 dominated by Phragmites australis/Bidens pilosa/Calamagrostis angustifolia, which formed separate, monoculture patches). Gram negative and arbuscular mycorrhizal fungal phospholipid fatty acid (PLFA) are more abundant in the site with short flooding period (zone 3) than in the site with long flooding period (zone 1), and they are also different in the P. australis, B. spilosa and C. angustifolia of zone 3. Principle Component Analysis (PCA) showed that the flooding period could explain 92.4% of variance in microbial composition. Redundancy Analysis (RDA) showed that available nitrogen (AN), total nitrogen (TN) and soil organic matter (SOM) could explain the 79.5% of variance in microbial composition among E. ovata, P. australis, B. pilosa and C. angustifolia. Results demonstrated that flooding period was the main factor in driving the microbial composition and plant-derived resources could influence soil microbial composition in the seasonally flooded zones.     

Vegetation-environment relationships between northern slope of Karlik Mountain and Naomaohu Basin, East Tianshan Mountains

Based on data from 22 sample plots and applying the Canonical Correspondence Analysis (CCA),this paper discusses the vegetation-environment relationships between the northern slope of Karlik Mountain and Naomaohu Basin,which is situated in the easternmost end of the Tianshan Mountains,Xinjiang Uygur Autonomous Region,China.For the zonal vegetation,community diversity of mountain vegetation is higher than that of the desert vegetation due to environmental factors.The CCA ordination diagram revealed that the composition and distribution of vegetation types are mainly determined by altitude,soil pH and soil salt content.With increasing elevation,the soil pH and total salt content decrease but the contents of soil organic matter,soil water,total nitrogen and total phosphorus increase gradually.In the CCA ordination diagrams,the sample plots and main species can be divided into five types according to their adaptations to the environmental factors.Type I is composed of desert vegetation distributed on the low mountains,hills,plains and deserts below an elevation of 1900 m;type II is distributed in the mountain and desert ecotone with an elevation of 1900-2300 m,and includes steppe desert,desert steppe and wetland meadow;type III is very simply composed of only salinized meadow;type IV is distributed above an elevation of 2300 m,containing mountain steppe,meadow steppe,subalpine meadow and alpine meadow;type V only contains salinized meadow.The results show that with increasing elevation,species combination changes from the xerophytic shrubs,semi-shrubs and herbs distributed in the low altitude zone with arid climate to the cold-tolerant perennial herbs growing in the high altitudinal zone with cold climate.     

Metabolic and phylogenetic profile of bacterial community in Guishan coastal water (Pearl River Estuary), South China Sea

Characteristics of a microbial community are important as they indicate the status of aquatic ecosystems. In the present study, the metabolic and phylogenetic profile of the bacterioplankton community in Guishan coastal water(Pearl River Estuary), South China Sea, at 12 sites(S1–S12) were explored by community-level physiological profiling(CLPP) with BIOLOG Eco-plate and denaturing gradient gel electrophoresis(DGGE). Our results showed that the core mariculture area(S6, S7 and S8) and the sites associating with human activity and sewage discharge(S11 and S12) had higher microbial metabolic capability and bacterial community diversity than others(S1–5, S9–10). Especially, the diversity index of S11 and S12 calculated from both CLPP and DGGE data(H 3.2) was higher than that of others as sewage discharge may increase water nitrogen and phosphorus nutrient. The bacterial community structure of S6, S8, S11 and S12 was greatly influenced by total phosphorous, salinity and total nitrogen. Based on DGGE fingerprinting, proteobacteria, especially γ- and α-proteobacteria, were found dominant at all sites. In conclusion, the aquaculture area and wharf had high microbial metabolic capability. The structure and composition of bacterial community were closely related to the level of phosphorus, salinity and nitrogen.     

山东乐陵河口地区土壤质量评价与地力提升技术研究

以全国土地污染防治项目取得地球化学资料为依据,分析研究乐陵河口地区土壤化学元素特征,结果表明：土壤中一级营养元素有机质、氮、磷相对缺乏,钾含量富足;二级营养元素氧化钙、氧化镁相对缺乏,硫含量富足;其他有益微量元素氧化铁、锰、钼和硼均相对缺乏,氯含量丰富,基本不缺。土壤地力提升的主要障碍因素是土壤盐渍化和土壤重金属污染。根据土壤综合肥力评价结果,结合基础调查成果,提出了通过科学施肥、土壤障碍消除和重金属污染修复等地力提升措施,增强土壤肥力,变中、低产田为中、高产田;兴利除害,抑制土壤重金属元素的活性,降低风险,为高效优质农业的规划与发展提供技术支撑。     

人工堤坝影响下的黄河三角洲海岸带生态特征分析

在滨海地区,堤坝干扰对自然植被景观及土壤属性的梯度变化规律有重要的影响.本文采用统计分析和梯度分析的方法,在RS信息提取和GIS空间分析技术的支持下,从植被群落的变化入手,从样地尺度上研究堤坝对黄河三角洲海岸带土壤环境的影响并揭示堤坝干扰下,土壤属性的梯度变化规律.研究表明:(1)堤坝影响海岸带地区自然植被的盖度,并且...     

Spatial variations of bacterial community composition in sediments of the Jiaozhou Bay,China

Spatial variations of sediment microbes pose a great challenge for the estimation of anthropogenic influence on biogeochemical processes, yet remain very unclear in coastal ecosystems. Surface sediments in 9 stations from the eutrophic Jiaozhou Bay, China, were sampled, DNA was extracted within the sediments, and the 16 S rDNA was sequenced with the Illumina Hiseq sequencing. Results reveal considerable heterogeneity of sediment bacteria in the Jiaozhou Bay, of which Proteobacteria and Bacteroidetes accounted for over 75%. Bacterial alpha-diversity indices decreased generally from the outside to the inner part of the bay and from the offshore to the nearshore area. Bacterial community structures of S3, S4, S7, and S8 clustered, those of S5, S13, and S14 grouped together, while those of S6 and S10 were distinct from each other and from those of the other stations. Major class Gammaproteobacteria were more abundant at the stations with mesoeutrophic to eutrophic levels(S4, S5, S8, and S10) and less abundant at oligotrophic stations(S6, S13, and S14), while Deltaproteobacteria had an opposite distribution pattern. Overall, bacterial community composition transitioned from being Xanthomonadales-dominant at S4 and S8 to being unidentifed_Gammaproteobacteria-dominant at S5, S6, S13, and S14, while in other stations there were comparable orders. The biogeochemical processes correspondingly changed from being nitrogen cycling-dominant at S4 and S8 to being sulfur cycling-dominant at S5, S6, S13, and S14. The bacterial distribution patterns were especially affected by the factors(dissolved organic phosphorus, DOP) in the overlying seawater due to the habitat status of P-insu fficiency in the bay. Both orders Xanthomonadales and Alteromonadales could serve as bioindicators of anthropogenic pollution to different pollution types. At last, divergent distribution patterns of individual bacterial populations in the bay were revealed, the influential environmental gradients were clarified, and the uncertainty of microbes was reduced, helping to predict environmental functions in coastal areas.