Detection of spatial fluctuations of non-point source fecal pollution in coral reef surrounding waters in southwestern Puerto Rico using PCR-based assays

Human fecal contamination of coral reefs is a major cause of concern. Conventional methods used to monitor microbial water quality cannot be used to discriminate between different fecal pollution sources. Fecal coliforms, enterococci, and human-specific Bacteroides (HF183, HF134), general Bacteroides-Prevotella (GB32), and Clostridium coccoides group (CP) 16S rDNA PCR assays were used to test for the presence of non-point source fecal contamination across the southwestern Puerto Rico shelf. Inshore waters were highly turbid, consistently receiving fecal pollution from variable sources, and showing the highest frequency of positive molecular marker signals. Signals were also detected at offshore waters in compliance with existing microbiological quality regulations. Phylogenetic analysis showed that most isolates were of human fecal origin. The geographic extent of non-point source fecal pollution was large and impacted extensive coral reef systems. This could have deleterious long-term impacts on public health, local fisheries and in tourism potential if not adequately addressed.     

Impact of discards of beam trawl fishing on the nematode community from the Tagus estuary (Portugal)

The impact of dead discards, originating from beam trawl fishing on the nematode community from the Tagus estuary was investigated in terms of vertical distribution of the dominant nematode groups. Sediment cores were collected from a mud-flat from the Tagus estuary. Crangoncrangon (Linnaeus, 1758) carcasses were added to the surface of the cores, simulating the settling of dead discards on the sediment. The vertical distribution of the dominant nematode groups was determined up to 4 cm deep at four different moments in time post deposition (0, 2, 4 and 6 h) and compared to control cores. The C.crangon addition to the sediment led to the formation of black spots and therefore oxygen depleted areas at the sediment surface. The Chromadora/Ptycholaimellus group, normally dominant at the surface layer, migrated downwards due to their high sensibility to toxic conditions. Sabatieria presented the opposite trend and became the dominant group at the surface layer. Since Sabatieria is tolerant to oxygen stressed conditions and high sulphide concentrations, we suggest that it migrated opportunistically towards an unoccupied niche. Daptonema, Metachromadora and Terschellingia did not show any vertical migration, reflecting their tolerance to anoxic and high sulphidic conditions. Our study showed that an accumulation of dead discards at the sediment surface might therefore alter the nematode community vertical distribution. This effect is apparently closely related to toxic conditions in the sediment, induced by the deposition of C.crangon at the sediment surface. These alterations might be temporal and reflect an adaptation of the nematode community to dynamic intertidal environments.     

Impact of the Phaeocystis globosa spring bloom on the intertidal benthic compartment in the eastern English Channel: a synthesis

From 1999 to 2005, studies carried out in the frame of regional and national French programs aimed to determine whether the Phaeocystisglobosa bloom affected the intertidal benthic communities of the French coast of the eastern English Channel in terms of composition and/or functioning. Study sites were chosen to cover most of the typical shore types encountered on this coast (a rocky shore, an exposed sandy beach and a small estuary). Both the presence of active Phaeocystis cells and their degradation product (foam) did have a significant impact on the studied shores. The primary production and growth rates of the kelp Saccharina latissima decreased during the bloom because of a shortage of light and nutrient for the macroalgae. On sandy sediments, the benthic metabolism (community respiration and community primary production), as well as the nitrification rate, were enhanced during foam deposits, in relation with the presence of bacteria and active pelagic cells within the decaying colonies. In estuarine sediments, the most impressive impact was the formation of a crust at the sediment surface due to drying foam. This led to anoxic conditions in the surface sediment and resulted in a high mortality among the benthic community. Some organisms also tended to migrate upward and were then directly accessible to the higher trophic level represented by birds. Phaeocystis then created a shortcut in the estuarine trophic network. Most of these modifications lasted shortly and all the systems considered came back to their regular properties and activities a few weeks after the end of the bloom, except for the most impacted estuarine area.     

Marine debris accumulation in the Northwestern Hawaiian Islands: an examination of rates and processes

Large amounts of derelict fishing gear accumulate and cause damage to shallow coral reefs of the Northwestern Hawaiian Islands (NWHI). To facilitate maintenance of reefs cleaned during 1996-2005 removal efforts, we identify likely high-density debris areas by assessing reef characteristics (depth, benthic habitat type, and energy regime) that influence sub-regional debris accumulation. Previously cleaned backreef and lagoonal reefs at two NWHI locations were resurveyed for accumulated debris using two survey methods. Accumulated debris densities and weights were found to be greater in lagoonal reef areas. Sample weight-based debris densities are extrapolated to similar habitats throughout the NWHI using a spatial 'net habitat' dataset created by generalizing IKONOS satellite derivatives for depth and habitat classification. Prediction accuracy for this dataset is tested using historical debris point data. Annual NWHI debris accumulation is estimated to be 52.0 metric tonnes. For planning purposes, individual NWHI atolls/reefs are allotted a proportion of this total.     

Occurrence of PSP-producing dinoflagellate Alexandrium tamiyavanichii in Bingo-Nada, the central coastal water of the Seto Inland Sea, Hiroshima Prefecture, Japan

During surveillance of the distribution of the paralytic shellfish poison (PSP)-producing dinoflagellate in 2003, 2004 and 2005 along the coastlines of the Seto Inland Sea, Hiroshima Prefecture, Japan, some species of toxic phytoplankton were isolated from the eastern coasts, Bingo-Nada, the central regions of the Seto Inland Sea. It was rather unexpectedly revealed from the basis of the morphological characteristics that they were unambiguously identified as Alexandrium tamiyavanichii and Alexandrium catenella. Two strains (ATY041106, ATY051018) of A. tamiyavanichii showed a specific toxicity of 38.7 x 10(-6) and 111.5 x 10(-6)MU/cell, respectively. These values seemed to be several times or much higher than that of A. catenella (AC030816, AC040614), having a specific toxicity of 4.5 x 10(-6) and 4.1 x 10(-6)MU/cell, respectively, isolated in the same area. From the results of HPLC-furuorometric analysis, it revealed that the toxins in ATY041106 exist almost exclusively as beta-epimers (C2, GTX3, GTX4), which accounted for 72.7 mol%. The toxin profiles of this strain are featured by the presence of a large amount of GTX3 (59.1 mol%) and a small amount (20.6%) of C1 and 2 in comparison with the PSP compositions of A. tamarense, which is isolated as the main responsible species in Hiroshima Bay, a western part of coastal sea in Hiroshima Prefecture. On the other hand, it revealed that the toxin profiles of two strains (AC030816, AC040614) of A. catenella exist almost exclusively as beta-epimers (C2, GTX3, GTX4), which accounted for 81.8 and 56.5 mol%, as the same manner. The toxin profiles of these two strains are featured by the presence of a large amount of C2 (80.5 and 46.3 mol%) in comparison with the PSP compositions of A. tamiyavanichii. To our knowledge, this is the first record to show the distribution and harmful influence of A. tamiyavanichii and A. catenella in Bingo-Nada in Hiroshima Prefecture. Though contamination of bivalves with these PSP-producing planktons in this area has not occurred yet so far, attention should be paid to this species as well as the other causative dinoflagellate from the stand point of public health and food hygiene.     

Urban seagrass: status of Posidonia oceanica facing the Genoa city waterfront (Italy) and implications for management

A system of five adjacent Posidonia oceanica meadows facing the waterfront of Genoa city (Ligurian Sea, NW Mediterranean) was investigated over different spatial scales (meters-kilometers) using three environmental indices: conservation index (CI), substitution index (SI) and phase-shift index (PSI). CI revealed differences mostly at large spatial scale, distinguishing the poor condition of the meadows closest to Genoa centre and harbour from the comparatively healthy condition of the farthest meadows. SI showed differences mostly at small spatial scale (i.e., within meadows), suggesting the influence of local factors in the re-colonisation of regressed meadows by the seagrass Cymodocea nodosa and/or the invasive alga Caulerpa racemosa. Mapping of PSI showed that the meadows closest to Genoa centre and harbour have undergone a nearly total phase shift and have no real potential for recovery: attempts to re-establish P. oceanica there might be a waste of time and money. On the contrary, the meadows farthest from Genoa centre and harbour showed a comparatively low level of phase shift and could still fully recover given specific management actions.     

Predation effects of benthivorous fish on grazing and shredding macroinvertebrates in a detritus-based stream food web

We investigated lethal and sublethal predation effects of the benthivorous gudgeon (Gobio gobio) on the grazing mayfly Rhithrogena semicolorata and the shredding amphipod Gammarus pulex over 21 months in a largely detritus-based small stream. We hypothesised that shredders are generally less vulnerable to fish predation and therefore less likely to be predation-controlled than grazers, because the latter are visible to the predators during their feeding on stone surfaces, while shredders may hide between leaves during foraging.The hypothesis was tested in two 400 m experimental reaches of a natural stream, which were manipulated in order to contain and to lack fish, respectively. Biomass of G. pulex was significantly reduced in the fish section while that of R. semicolorata was not. Since approximately 91% of the annual production of G. pulex but only 12% of R. semicolorata production was consumed by gudgeon, the observed biomass difference of G. pulex is likely due to a lethal predation effect. However, no sublethal predation effects such as reduced concentration of storage components (triglycerides, glycogen) or reduced reproductive success were observed for both species. Lower mean body length of the R. semicolorata larvae in the fish section did not result in a lower number of eggs in the abdomen of the last instar larvae. Hence, in contrast to our initial hypothesis, in the studied stream the shredder was top-down-controlled, while the grazer was not. It is concluded that top-down control depends on the ecological characteristics of a specific predator-prey pair rather than on trophic guild of the prey.     

Community-level destruction of hard corals by the sea urchin Diadema setosum

Sea urchins are common herbivores and bioeroders of coral ecosystems, but rarely have they been reported as corallivores. We determined the spatial pattern of hard coral damage due to corallivory and bioerosion by the sea urchin Diadema setosum Leske in Hong Kong waters. Coral damage was common at the northeastern sites, with 23.7 – 90.3% colonies being either collapsed or severely damaged with >25% tissue loss. Many genera of corals were impacted by the sea urchin but the damage was most obvious for the structure forming genus Platygyra. The percentage of severely damaged and collapsed coral had significant positive correlation with the abundance of D. setosum, which ranged from 0.01 to 5.2 individuals per coral head or 0.1 – 21.1 individuals m⁻² across the study sites. Remedial management actions such as sea urchin removal are urgently needed to save these fringing coral communities.     

Spectra® fishing twine entanglement of a bottlenose dolphin: A case study and experimental modeling

We report here the first documented case of a cetacean fatality from entanglement in recreational Spectra® fishing twine. Spectra® twine is a relatively new microfilament braided twine that is marketed to replace nylon monofilament twine in rod and reel fisheries. Following the case of this entangled bottlenose dolphin (Tursiops truncatus), we conducted tests with Spectra® and comparable monofilament twines on Tursiops tissue from stranded animals to compare the abrasion properties of the twines. We found that Spectra® twine was significantly more abrasive on bottlenose dolphin fluke tissue than a similar strength and diameter monofilament. With the same forces applied, the Spectra® twine cut deeper than the monofilament, exhibiting a linear relationship with force applied where the monofilament appeared to reach a maximum depth of penetration of approximately 2 mm. These tests may explain why this bottlenose dolphin was so severely debilitated from carrying a relatively light load of twine over a short period of time (20 days). Future public and corporate outreach will be essential to minimize the effect that this increasingly popular fishing twine will have on non-target species.     

Ostreopsis cf. ovata bloom in the northern Adriatic Sea during summer 2009: ecology, molecular characterization and toxin profile

Intense blooms of the benthic dinoflagellate Ostreopsis cf. ovata have occurred in the northern Adriatic Sea since 2006. These blooms are associated with noxious effects on human health and with the mortality of benthic organisms because of the production of palytoxin-like compounds. The O. cf. ovata bloom and its relationships with nutrient concentrations at two stations on the Conero Riviera (northern Adriatic Sea) were investigated in the summer of 2009. O. cf. ovata developed from August to November, with the highest abundances in September (1.3 × 10⁶ cells g⁻¹ fw corresponding to 63.8 × 10³ cells cm⁻²). The presence of the single O. cf. ovata genotype was confirmed by a PCR assay. Bloom developed when the seawater temperature was decreasing. Nutrient concentrations did not seem to affect bloom dynamics. Toxin analysis performed by high resolution liquid chromatography-mass spectrometry revealed a high total toxin content (up to 75 pg cell⁻¹), including putative palytoxin and all the ovatoxins known so far.     

Narrower grid structure of artificial reef enhances initial survival of in situ settled coral

The initial factors that cause a decline in the survival of in situ settled corals remain poorly understood. In this study, we demonstrated through field experiments that the design of artificial grid plates may influence the initial survival of Acropora corals, with narrower grids being the most effective. In fact, grid plates with a 2.5-cm mesh presented the highest recorded survival rate (14%) at 6 months after settlement (representing approximately 50 corals per 0.25 m² of plate). This is the first study where such high survival rates, matching those of cultures under aquarium conditions, were obtained in the field without using additional protective measures, such as guard nets against fish grazing after seeding. Therefore, our results provide a foundation for establishing new and effective coral restoration techniques for larval seeding, in parallel to clarifying the details of the early life stages of reef-building corals.     

The toxic benthic dinoflagellate Ostreopsis ovata: quantification of proliferation along the coastline of Genoa, Italy

Toxic harmful algal bloom (HAB) occurrence is becoming more frequent and problematic in highly urbanized coastal zones. In summer 2005 along the urbanized Genoa coastline (Ligurian Sea, North western Mediterranean Sea), local first aid stations treated about 200 people, who all showed similar symptoms following exposure to marine aerosols. The link with proliferation of Ostreopsis ovata was made, and it highlighted for the first time, the risks that benthic HABs may represent in highly urbanised temperate areas. Subsequently, a specific monitoring plan was designed and implemented in the same area in July 2006, before the first signs of Ostreopsis proliferation were detected. Here we report on this quantification of an Ostreopsis ovata bloom in the Ligurian Sea. Cells were quantified both in the water column and in the epiphytic community on macrophytes. Our results suggest a role of sea water temperature and weather conditions in favouring bloom development.     

Levels of persistent organic pollutants and residual pattern of DDTs in small cetaceans from the coast of São Paulo, Brazil

The State of São Paulo is the most developed area in Brazil and was impacted by persistent organic pollutants for several decades. This study investigated organochlorines in five species of small cetaceans (Pontoporia blainvillei, Stenella frontalis, Sotalia guianensis, Tursiops truncatus and Steno bredanensis) found dead along the coast of São Paulo between 1997 and 2003. DDTs (15.9 μg g⁻¹ lipid; mean for all pooled individuals) and PCBs (8.08 μg g⁻¹) exhibited the highest concentrations in the animals, reflecting large amounts formerly used in Brazil. Lower levels of mirex (0.149 μg g⁻¹), HCB (0.051 μg g⁻¹), CHLs (0.008 μg g⁻¹) and HCHs (0.007 μg g⁻¹) were detected in all species. Residual pattern of DDTs in dolphins suggests that o,p′-DDT is more recalcitrant than p,p′-DDT in the body of the animals and/or the environment. In contrast to p,p′-DDT, residues of o,p′-DDT seem to be preferentially converted into o,p′-DDD rather than o,p′-DDE.     

Relationship between differential retention of Escherichia coli and Enterococcus faecalis and variations in enzyme activity in the scallop Patinopecten yessoensis

Uptake of Escherichia coli and Enterococcus faecalis and variations of trypsin amylase activity acid phosphatase and superoxide dismutase in tissue of the scallop Patinopecten yessoensis were detected. The results showed that P. yessoensis accumulated E. faecalis in larger numbers and more rapidly than E. coli, both with the highest concentration in the digestive tract and lowest in hemolymph. Compared to E. coli, all scallops exposed to E. faecalis showed significantly higher trypsin and AMS activity. SOD activity in hemocytes and ACP activity in hemolymph was significantly higher in the treatments with 5 log₁₀CFU/ml E. coli than with E. faecalis. But no significant differences in ACP activity of P. yessoensis exposed to a 3 log₁₀CFU/ml inoculum of both bacteria were recorded. In conclusion, the mass retention of gut microflora in P. yessoensis is positively correlated with digestive enzymes activity and negatively correlated with ACP activity in the hemocyte.     

Increased plastic litter cover affects the foraging activity of the sandy intertidal gastropod Nassarius pullus

This study analyzed the foraging behavior of the gastropod Nassarius pullus on garbage-impacted sandy shores of Talim Bay, Batangas, Philippines. The effect of different levels of plastic garbage cover on foraging efficiency was investigated. Controlled in situ baiting experiments were conducted to quantify aspects of foraging behavior as affected by the levels of plastic litter cover in the foraging area. The results of the study indicated that the gastropod’s efficiency in locating and in moving towards a food item generally decreased as the level of plastic cover increased. Prolonged food searching time and increased self-burial in sand were highly correlated with increased plastic cover. The accuracy of orientation towards the actual position of the bait decreased significantly when the amount of plastic cover increased to 50%. These results are consistent with the significant decreases in the abundance of the gastropod observed during periods of deposition of large amounts of plastic and other debris on the shore.     

Comparison of the role of two Spartina species in terms of phytostabilization and bioaccumulation of metals in the estuarine sediment

In the joint estuary of the Odiel and Tinto rivers (SW Spain), the invasive Spartina densiflora Brongn. and the native Spartina maritima (Curtis) Fernald are growing over sediments with extreme concentrations of heavy metals. The contents of As, Cu, Fe, Mn, Pb and Zn were determined in sediments, rhizosediments and different tissues of both species, from Odiel and Tinto marshes. S. densiflora showed a higher capability to retain metals around their roots and to control the uptake or transport of metals, mediated by a higher formation of plaques of Fe/Mn (hydro) oxides on the roots. At the Tinto marsh, there were no differences between the metal concentrations of the sediment and those of the rhizosediment, a fact that could be explained by the extremely high concentrations of metals which can pass over a threshold value, altering the properties of root cells and preventing roots from acting as a ‘barrier’ to the uptake or transport of metals.     

PCB exposure in sea otters and harlequin ducks in relation to history of contamination by the Exxon Valdez oil spill

Exposure to contaminants other than petroleum hydrocarbons could confound interpretation of Exxon Valdez oil spill effects on biota at Prince William Sound, Alaska. Hence, we investigated polychlorinated biphenyls (PCBs) in blood of sea otters and harlequin ducks sampled during 1998. PCB concentrations characterized by lower chlorinated congeners were highest in sea otters from the unoiled area, whereas concentrations were similar among harlequin ducks from the oiled and unoiled area. Blood enzymes often elevated by xenobiotics were not related to PCB concentrations in sea otters. Only sea otters from the unoiled area had estimated risk from PCBs, and PCB composition or concentrations did not correspond to reported lower measures of population performance in sea otters or harlequin ducks from the oiled area. PCBs probably did not influence limited sea otter or harlequin duck recovery in the oiled area a decade after the spill.     

Prevalence and genetic profiles of Escherichia coli from mangroves and mangrove associated foods off Goa,India

A total of 120 samples comprising of water (45), sediment (45) and mangrove originated food (30) collected from mangrove ecosystems of Goa were screened for Escherichia coli employing ISO-16654 method. Seventy-one (59.16%) samples were positive for E. coli. The E. coli isolates were further characterized by serotyping, virulence gene profiling and pulsed field gel electrophoresis (PFGE). Water and sediment samples were analyzed for physico-chemical parameters. The serotypes reported were O1, O10, O13, O17, O36, O41, O50, O68, O105, O116, O141, O148, O159, O162 and rough types while, 23 strains could not be typed. The stx1 and stx2 genes were detected in 33(46.47%) and 16(22.53%) isolates, respectively. The XbaI restriction digestion patterns of the stx positive strains were diverse. Interestingly, few strains isolated from diarrheal patients and from water, sediment and food from mangrove sources were genetically similar. The study showed that the mangrove ecosystem could be a potential reservoir for pathogenic E. coli.     

Effects of lanthanum(III) and EDTA on the growth and competition of Microcystis aeruginosa and Scenedesmus quadricauda

Rare earth elements (REEs) are widely used to increase crop production in China. However, little attention has been paid to their impacts on aquatic ecology. Batch cultivation was used here to study the effects of lanthanum (La) and EDTA on the growth and competition of the cyanobacterium Microcystis aeruginosa and the green alga Scenedesmus quadricauda. When EDTA was present at a very low concentration (0.269 μmol L⁻¹), low lanthanum concentrations (?7.2 μmol L⁻¹) had little stimulative effect on the growth of M. aeruginosa and S. quadricauda, whereas a high lanthanum concentration (72 μmol L⁻¹) had significant inhibitory effect on both of them. The results of cultivation experiments suggested that the inhibitory effect on M. aeruginosa was higher than that on S. quadricauda and S. quadricauda could become dominant in mixed cultures. When lanthanum was not added to the culture medium, high EDTA concentrations (>13.4 μmol L⁻¹) had a great inhibitory effect on the growth of M. aeruginosa but little effect on the growth of S. quadricauda, which could become dominant in the mixed cultures.Lanthanum and EDTA had complex effects on the growth and competition of M. aeruginosa and S. quadricauda. EDTA did not change the stimulation of low lanthanum concentrations on both, but at intermediated concentrations (2.69-13.4 μmol L⁻¹) it could greatly alleviate lanthanum inhibition on M. aeruginosa; thus, M. aeruginosa would dominate S. quadricauda in these mixed cultures. Lanthanum at low concentration (7.2 μmol L⁻¹) could also alleviate the inhibition of high EDTA on M. aeruginosa, but did not alter the outcome of the competition.