Sediment mobility due to currents and waves in the Torres Strait–Gulf of Papua region

The MECO hydrodynamic model (MECO Technical Report No. OMR-118/120, CSIRO Marine Research, 1998) was adapted for the Torres Strait–Gulf of Papua region at 0.05° resolution. Validation of the hydrodynamic model was carried out against observed current meter data and calculated tidal sea levels. Dispersal pathways of sediments derived from the Fly River, and from a resuspension event along the northern Great Barrier Reef were investigated using an Eulerian approach. Sediment input into Torres Strait is found to be greater during the Trade season by approximately 10%. Wave data were also obtained, and together with hydrodynamic model output, sediment mobility due to currents, waves and wave–current interactions was considered for both the Trade and Monsoon seasons. Sediment mobility in the Gulf of Papua is dominated by wave motion, whereas Torres Strait is a mixed environment of waves and tidal currents.     

Subtidal variability in the Taiwan Strait induced by combined forcing of winter monsoon and topography

As an important channel connecting the East and South China Seas, circulations in the Taiwan Strait are strongly influenced by the East Asian monsoon and the topography of the strait, especially the Taiwan Bank (TWB), which is a remarkable topographic feature located at the southern entrance to the strait. Based on a series of pressure gauges deployed roughly 40 km offshore along the western Strait, subtidal sea-level variability under the combined impact of winter monsoon and topography was studied. The analyses show significant along-strait coherences of subtidal sea levels and their coherences with the large-scale monsoon wind for periods from 2 to 14 days. It is suggested that these fluctuations are mainly forced waves driven by the large-scale winds. In addition to the normal cross-shore wind setup, a sea-level setup in the along-strait direction is confirmed, which is induced by the combined forcing of the fluctuating winter monsoon and the blocking of the TWB. A southward current surge driven by a northerly wind event will cause a rising sea level over the TWB inducing a southward along-shore slope anomaly to the north of the TWB and a reversed slope anomaly to the south. The subtidal current through the channel to the west of the TWB is found to be influenced by the reversed slope anomalies generated via the along-shore setup.     

Shelf sediment dispersal during the dry season,Princess Charlotte Bay,Great Barrier Reef,Australia

Princess Charlotte Bay, located on the northern Great Barrier Reef, is an environment of terrigenous and carbonate deposition. The dynamics on this shelf are controlled by the Great Barrier Reef at the edge of the shelf, and the mid-shelf, shore-normal reefs. This study examines the dynamics during the dry season, with six time-series records from instrumented tripod deployments and numerous hydrographic stations.The shallow nearshore waters and the estuaries prove to be the sites where most active sediment resuspension and transport takes place. Sediment resuspension is effected primarily by waves in the nearshore, and channeling of tidal currents in the estuaries. Bedload transport did not occur during this study, mainly because current velocities were too low. Suspended particulate matter (SPM) transport in the bay is governed by tides and winds. Strong tidal flow imparts a strong offshore component to the transport, and strong southeast winds impart an alongshore component that transports SPM out of the bay to the northwest. Rattlesnake Channel, east of Princess Charlotte Bay, is another route by which SPM leaves the bay. Flow through this channel is predominantly tidal, with ebb waters (leaving Princess Charlotte Bay) carrying higher SPM concentrations than flood waters.SPM flux in the nearshore was an order of magnitude higher than at offshore stations, with highest fluxes generally occurring at times of sustained southeast winds. Transect data show that SPM drops to average bay values in water 11 m deep, indicating most SPM is transported in nearshore waters.     

基于WRF模式的青藏高原斜坡和平台加热影响亚洲夏季风的模拟研究

青藏高原大地形的热力强迫作用对亚洲夏季风的形成和发展具有重要的影响.本文利用较高分辨率的WRF区域模式,探讨了高原不同区域（斜坡和平台）的地形加热分别对南亚夏季风和东亚夏季风的影响.结果表明：高原南部喜马拉雅山脉的斜坡地形加热对其周围局地的环流形势和降水影响十分明显,是南亚夏季风北支分量形成和维持的主导因子,也是斜坡上气流爬坡和降水发生的必要条件.斜坡加热对东亚夏季风也有明显的增强作用,它不仅加强了中国东部低空西南季风环流,还会造成北部南下的异常干冷空气的响应.斜坡上的地形加热作用也是对流层高层暖中心位置维持在斜坡上空的一个重要原因.而高原平台加热对季风环流和降水的影响虽然没有喜马拉雅山脉斜坡加热那么显著,但是对南亚夏季风的影响范围更广,对经向哈得来环流影响更明显,能够调控高原以外更远处热带洋面上的西南季风环流.通过比较高原不同区域地形加热条件下的多种季风指数,进一步表明了高原地形加热对南亚和东亚夏季风均有增强作用,但是高原不同区域的地形加热对两类夏季风子系统又会产生不一样的影响.     

Existence of eddies at crossroad of the Indonesian seas

An eddy-resolving Indo-Pacific ocean circulation model was applied to highlight the behavior of eddies throughout the Indonesian seas. The complexity of the topography and coastline at the entrance of the Makassar Strait induce an eddy-type throughflow, instead of a straightforward flow. A sill and a narrow passage in the Makassar strait creates a barrier and impedes the continuation of eddies from the Pacific ocean, but the existence of a steep deep basin (>500 m depth) between the Java and Flores seas indicates a possible area for eddies. Based on our numerical results, we described the presence of a unique eddy structure north of Lombok Island, which we designated the “Lombok Eddy” and verified it by performing a drifter release field experiment and reviewing monthly mean climatology data from the World Ocean Atlas 2001 and XBT PX2 track data. NCEP/NCAR reanalysis, satellite observation data, and mixed layer depth analysis were also used to confirm these processes. By analyzing numerical simulation results and available temperature datasets, two additional eddies were found. All eddies form primarily due to eastward local winds correlated with seasonal monsoon winds during the austral summer. These eddies vary synchronously at an interannual time scale. Together, they are referred to as the Lombok Eddy Train (LET), which affects the surface layer down to a depth of 60 m, and the intensity of the eddy system is strongly affected by mixed layer depth variability from December to February.     

On the variability of the flow along the Meso-American Barrier Reef system: a numerical model study of the influence of the Caribbean current and eddies

A high resolution (3–8 km grid), 3D numerical ocean model of the West Caribbean Sea (WCS) is used to investigate the variability and the forcing of flows near the Meso-American Barrier Reef System (MBRS) which runs along the coasts of Mexico, Belize, Guatemala and Honduras. Mesoscale variations in velocity and temperature along the reef were found in seasonal model simulations and in observations; these variations are associated with meandering of the Caribbean current (CC) and the propagation of Caribbean eddies. Diagnostic calculations and a simple assimilation technique are combined to infer the dynamically adjusted flow associated with particular eddies. The results demonstrate that when a cyclonic eddy (negative sea surface height anomaly (SSHA)) is found near the MBRS the CC shifts offshore, the cyclonic circulation in the Gulf of Honduras (GOH) intensifies, and a strong southward flow results along the reef. However, when an anticyclonic eddy (positive SSHA) is found near the reef, the CC moves onshore and the flow is predominantly westward across the reef. The model results help to explain how drifters are able to propagate in a direction opposite to the mean circulation when eddies cause a reversal of the coastal circulation. The effect of including the Meso-American Lagoon west of the Belize Reef in the model topography was also investigated, to show the importance of having accurate coastal topography in determining the variations of transports across the MBRS. The variations found in transports across the MBRS (on seasonal and mesoscale time scales) may have important consequences for biological activities along the reef such as spawning aggregations; better understanding the nature of these variations will help ongoing efforts in coral reef conservation and maintaining the health of the ecosystem in the region.     

Numerical modelling of the suspended sediment transport in Torres Strait

One-dimensional vertical and three-dimensional fine-resolution numerical models of sediment transport have been developed and applied to the Torres Strait region of northern Australia. The one-dimensional model, driven by measured waves and currents, was calibrated against measured suspended sediment concentrations using a sequential data assimilation algorithm. The algorithm produced a good match between model and data, but this was achieved only by allowing some temporal variability in parameter values, suggesting that there were underlying uncertainties in the model structure and forcing data. Implications of the assimilation results to the accuracy of the numerical modelling are discussed and the need for observational programmes having an extensive spatial and temporal coverage is highlighted. The three-dimensional sediment model, driven by modelled waves and currents, simulates sediment transport over the shelf during the monsoon and trade-wind seasons covering 1997–2000. The model predicts strong seasonal variability of the sediment transport on the shelf attributed to seasonally varying hydrodynamics, and illustrates significant inter-annual variability of the sediment fluxes driven by extreme events. The developed model provides a platform for testing scientific hypothesis. With additional calibration, including uncertainty analysis, it can also be used in a management context.     

Circulation and connectivity on the Australian North West Shelf

Australia's North West Shelf supports a diverse range of tropical habitats and marine communities, as well as being Australia's most economically significant marine region. This study is the first attempt to describe the ocean circulation across the North West Shelf on time-scales from hours to years, and space scales from 10 km over the entire shelf to 1 km in a selected focus area around the Dampier Archipelago. A series of nested circulation models have been developed with forcing by realistic winds, tides, and larger scale oceanographic conditions (taken from a global circulation model). Dispersion and connectivity patterns have also been estimated over the shelf using particle-tracking techniques. The simulations covered a period of more than 6 years, allowing the tidal, seasonal, and interannual characteristics to be investigated. Model results confirm that the instantaneous current patterns are strongly dominated by the barotropic tide and its spring–neap cycle. However, longer term transports over the inner- and mid-shelf were mainly controlled by wind-driven flow, which followed the seasonal switch from summer monsoon winds to southeasterly trades in winter. Results were shown to be relatively insensitive to adjustable model parameters and sub-model structures. However, model performance was strongly dependent on the quality of the forcing fields. Connectivity results have been represented in terms of a comprehensive set of statistical probabilities that have been made available online (http://www.per.marine.csiro.au/connie). The potential regional-scale connectivity between coral reefs on the North West Shelf has been used to illustrate the approach.     

The potential impact of bedform migration on seagrass communities in Torres Strait,northern Australia

Seagrass communities in the northwest of Torres Strait are known to disappear episodically over broad areas. Sediment mobility surveys were undertaken within two study areas during the monsoon and trade wind seasons, in the vicinity of Turnagain Island, to find out if the migration of bedforms could explain this disappearance. The two study areas covered sand bank and sand dune environments to compare and contrast their migration characteristics. Repeat multibeam sonar surveys were used to measure dune-crest migration during each season.     

Nearshore currents on the southern Namaqua shelf of the Benguela upwelling system

Nearshore currents of the southern Namaqua shelf were investigated using data from a mooring situated three and a half kilometres offshore of Lambert's Bay, downstream of the Cape Columbine upwelling cell, on the west coast of South Africa. This area is susceptible to harmful algal blooms (HABs) and wind-forced variations in currents and water column structure are critical in determining the development, transport and dissipation of blooms. Time series of local wind data, and current and temperature profile data are described for three periods, considered to be representative of the latter part of the upwelling season (27 January–22 February), winter conditions (5–29 May) and the early part of the upwelling season (10 November–12 December) in 2005. Differences observed in mean wind strength and direction between data sets are indicative of seasonal changes in synoptic meteorological conditions. These quasi-seasonal variations in wind forcing affect nearshore current flow, leading to mean northward flow in surface waters early in the upwelling season when equatorward, upwelling-favourable winds are persistent. Mean near-surface currents are southward during the latter part of the upwelling season, consistent with more prolonged periods of relaxation from equatorward winds, and under winter conditions when winds were predominantly poleward. Within these seasonal variations in mean near-surface current direction, two scales of current variability were evident within all data sets: strong inertial oscillations were driven by diurnal winds and introduced vertical shear into the water column enhancing mixing across the thermocline, while sub-inertial current variability was driven by north–south wind reversals at periods of 2–5 days. Sub-inertial currents were found to lag wind reversals by approximately 12 h, with a tendency for near-surface currents to flow poleward in the absence of wind forcing. Consistent with similar sites along the Californian and Iberian coasts, the headland at Cape Columbine is considered to influence currents and circulation patterns during periods of relaxation from upwelling-favourable winds, favouring the development of a nearshore poleward current, leading to poleward advection of warm water, the development of stratification, and the creation of potentially favourable conditions for HAB development.     

Some aspects of the monsoon circulation and monsoon rainfall

Summary The south Asian summer monsoon from June to September accounts for the greater part of the annual rainfall over most of India and southeast Asia. The evolution of the summer and winter monsoon circulations over India is examined on the basis of the surface and upper air data of stations across India. The salient features of the seasonal reversals of temperature and pressure gradients and winds and the seasonal and synoptic fluctuations of atmospheric humidity are discussed. The space-time variations of rainfall are considered with the help of climatic pentad rainfall charts and diagrams. The rainfall of several north and central Indian stations shows a minimum around mid-August and a maximum around mid-February which seem to be connected with the extreme summer and winter positions of the ITCZ and the associated north-south shifts in the seasonal circulation patterns. Attention is drawn to the characteristic features of the monsoon rainfall that emerge from a study of daily and hourly rainfall of selected stations. Diurnal variations of temperature, pressure, wind and rainfall over the monsoon belt are briefly treated.     

Study on subtidal circulation and variability in the Gulf of St. Lawrence,Scotian Shelf,and Gulf of Maine using a nested-grid shelf circulation model

This paper examines the subtidal circulation and associated variability in the Gulf of St. Lawrence, the Scotian Shelf, and the Gulf of Maine (GSL-SS-GOM) in 1988–2004 based on results produced by a nested-grid shelf circulation model. The model has a fine-resolution child model (～ (1/12)°) embedded inside a coarse-resolution parent model (～ (1/4)°) of the northwest Atlantic. The combination of the semi-prognostic method and the spectral nudging method is used to reduce the model seasonal bias and drift. The child model reproduces the general features of the observed circulation and hydrography over the study region during the study period. The child model results demonstrate that the time-mean circulation in the GSL is affected by the time-mean atmospheric forcing and inflow through the Strait of Belle Isle. The temporal variability in atmospheric forcing affects the outflow through western Cabot Strait, which in turn affects the transport of the Nova Scotian Current and the gulf-wide cyclonic circulation in the GOM. The simulated seasonal variability of salinity in the top 30 m of the GSL-SS-GOM is mainly affected by the equatorward advection of low-salinity waters from the lower St. Lawrence Estuary to the GOM through the Scotian Shelf. The simulated intraseasonal variability of circulation in the GSL is affected by the variability in the estuarine circulation in response to the temporal variability in atmospheric forcing. On the Scotian Shelf, the intraseasonal variability is mainly driven by the variability of wind forcing and mesoscale and nonlinear dynamics over the shelf break and slope region. The interannual variability in the simulated temperature and salinity are spatially coherent in the intermediate waters in the GSL, which is caused partially by the local response to atmospheric variability and partially by variabilities over the southern Newfoundland Shelf that enter the GSL through the eastern Cabot Strait. By comparison, on the Scotian Shelf, the interannual variability of simulated circulation is affected by anomalies produced by the nonlinear dynamics which are advected equatorwards by the shelf break jet.     

Assessing the additive risks of PSII herbicide exposure to the Great Barrier Reef

Herbicide residues have been measured in the Great Barrier Reef lagoon at concentrations which have the potential to harm marine plant communities. Monitoring on the Great Barrier Reef lagoon following wet season discharge show that 80% of the time when herbicides are detected, more than one are present. These herbicides have been shown to act in an additive manner with regards to photosystem-II inhibition. In this study, the area of the Great Barrier Reef considered to be at risk from herbicides is compared when exposures are considered for each herbicide individually and also for herbicide mixtures. Two normalisation indices for herbicide mixtures were calculated based on current guidelines and PSII inhibition thresholds. The results show that the area of risk for most regions is greatly increased under the proposed additive PSII inhibition threshold and that the resilience of this important ecosystem could be reduced by exposure to these herbicides.     

Water quality monitoring: a combined approach to investigate gradients of change in the Great Barrier Reef, Australia

For the managers of a region as large as the Great Barrier Reef, it is a challenge to develop a cost effective monitoring program, with appropriate temporal and spatial resolution to detect changes in water quality. The current study compares water quality data (phytoplankton abundance and water clarity) from remote sensing with field sampling (continuous underway profiles of water quality and fixed site sampling) at different spatial scales in the Great Barrier Reef north of Mackay (20 degrees S). Five transects (20-30 km long) were conducted from clean oceanic water to the turbid waters adjacent to the mainland. The different data sources demonstrated high correlations when compared on a similar spatial scale (18 fixed sites). However, each data source also contributed unique information that could not be obtained by the other techniques. A combination of remote sensing, underway sampling and fixed stations will deliver the best spatial and temporal monitoring of water quality in the Great Barrier Reef.     

Alkalinity and dissolved inorganic carbon exports from tropical and subtropical river catchments discharging to the Great Barrier Reef,Australia

Dissolved inorganic carbon (DIC) transport by rivers is an important control on the pH and carbonate chemistry of the coastal ocean. Here, we combine DIC and total alkalinity (TAlk) concentrations from four tropical rivers of the Great Barrier Reef region in Australia with daily river discharge to quantify annual river loads and export rates. DIC in the four rivers ranged from 284 to 2,639 μmol kg⁻¹ and TAlk ranged from 220 to 2,612 μmol kg⁻¹. DIC:TAlk ratios were mostly greater than one suggesting elevated exports of free [CO₂*]. This was pronounced in the Johnstone and Herbert rivers of the tropical wet north. The largest annual loads were transported in the two large river catchments of the southern Great Barrier Reef region, the Fitzroy and Burdekin rivers. The carbon stable isotopic composition of DIC suggests that carbonate weathering was the dominant source of DIC in the southern rivers, and silicate weathering was likely a source of DIC in the northern Wet Tropics rivers. Annual loads and export rates were strongly driven by precipitation and discharge patterns, the occurrence of tropical cyclones, and associated flooding events, as well as distinct seasonal dry and wet periods. As such, short-lived hydrological events and long-term (seasonal and inter-annual) variation of DIC and TAlk that are pronounced in rivers of the tropical and subtropical wet and dry climate zone should be accounted for when assessing inorganic carbon loads to the coastal ocean and the potential to buffer against or accelerate ocean acidification.     

The Kuroshio Extension: a leading mechanism for the seasonal sea-level variability along the west coast of Japan

Sea level changes coherently along the two coasts of Japan on the seasonal timescale. Archiving, validation, and interpretation of satellite oceanographic altimetry data and ocean general circulation model for the Earth Simulator results indicate that the variation propagates clockwise from Japan’s east coast through the Tsushima Strait into the Japan/East Sea (JES) and then northward along the west coast. In this study, we hypothesize and test numerically that the sea-level variability along the west coast of Japan is remotely forced by the Kuroshio Extension (KE) off the east coast. Topographic Rossby waves and boundary Kelvin waves facilitate the connection. Our 3D Princeton Ocean Model when forced by observed wind stress reproduces well the seasonal changes in the vicinity of JES. Two additional experiments were conducted to examine the relative roles of remote forcing and local forcing. The sea-level variability inside the JES was dramatically reduced when the Tsushima Strait is blocked in one experiment. The removal of the local forcing, in another experiment, has little effect on the JES variability. Both experiments support our hypothesis that the open-ocean forcing, possibly through the KE variability, is the leading forcing mechanism for sea-level change along the west coast of Japan.     

Flow patterns at the Chesapeake Bay entrance

The spatial and temporal variability of water entering and leaving the Chesapeake Bay estuary was determined with a spatial resolution of 75 m. The four cruises during which the observations were made took place under different conditions of freshwater discharge, tidal phase, and wind forcing. The tidal variability of the flows was dominated by the semidiurnal constituents that displayed greatest amplitudes and phase lags near the surface and in the channels that lie at the north and south sides of the entrance. The subtidal variability of the flows was classified into two general scenarios. The first scenario occurred during variable or persistently non-southwesterly winds. Under these conditions there was surface outflow and bottom inflow in the two channels, inflow over the shoal between the two channels, and possible anticyclonic gyre formation over the shoal. The flow pattern in the channels was produced by gravitational circulation and wind forcing. Over the shoal it was caused by tidal rectification and wind forcing. The second scenario occurred during persistently southwesterly winds. The anticyclonic gyre over the shoal vanished suggesting that wind forcing dominated the tidal rectification mechanism over the shoal, while gravitational circulation and wind forcing continued to cause the flows in the channels. In both scenarios, most of the volume exchange took place in the channels.     

Numerical study of seasonal circulation and variability over the inner shelf of the northern South China Sea

This study examines seasonal circulation, hydrography, and associated spatial variability over the inner shelf of the northern South China Sea (NSCS) using a nested-grid coastal ocean circulation model. The model external forcing consists of tides, atmospheric forcing, and open boundary conditions based on the global ocean circulation and hydrography reanalysis produced by the Hybrid Coordinate Ocean model. Five numerical experiments are conducted with different combinations of external forcing functions to examine main physical processes affecting the seasonal circulation in the study region. Model results demonstrate that the monthly mean circulation in the study region features the Guangdong Coastal Current (GCC) over coastal waters and the South China Sea Warm Current (SCSWC) in the offshore deep waters. The GCC produced by the model flows nearly southwestward in winter months and northwestward in summer months, which agrees with previous studies. The SCSWC flows roughly northeastward and is well defined in summer months. In winter months, by comparison, the SCSWC is superseded by the southwestward strong wind-driven currents. Analysis of model results in five different experiments demonstrates that the monthly mean circulation over coastal and inner shelf waters of the NSCS can be approximated by barotropic currents forced by the southwestward monsoon winds in winter months. In summer months, by comparison, the monthly mean circulation in the study region is affected significantly by baroclinic dynamics associated with freshwater runoff from the Pearl River and advection of warm and saline waters carried by the SCSWC over the NSCS.     

Quaternary clay mineralogy in the northern South China Sea (ODP Site 1146) —— Implications for oceanic current transport and East Asian monsoon evolution

The East Asian monsoon system is a thermodynamic atmospheric circulation induced by the different potential heating between the 揥estern Pacific Warm Pool?(WPWP) and the Asian continent. The circulation patterns dominate seasonal patterns of winds, preci…