Multiple statistical approaches for the discrimination of mangrove species of Rhizophoraceae using transformed field and laboratory hyperspectral data

This study aims at discriminating eight mangrove species of Rhizophoraceae family of Indian east coast using field and laboratory spectra in spectral range (350–2500 nm). Parametric and non-parametric statistical analyses were applied on spectral data in four spectral modes: (i) reflectance (ii) continuum removed, (iii) additive inverse and (iv) continuum removed additive inverse. We introduced continuum removal of inverse spectra to utilize the advantage of continuum removal in reflectance region. Non-parametric test gave better separability than parametric test. Principal component analysis and stepwise discriminant analysis were applied for feature reduction and to identify optimal wavelengths for species discrimination. To quantify the separability, Jeffries–Matusita distance measure was derived. Green (550 nm), red edge (680–720 nm) and water absorption region (1470 and 1850 nm) were found to be optimal wavelengths for species discrimination. The continuum removal of additive inverse spectra gave better separability than the continuum removed spectra.     

Assessing Metal-Induced Changes in the Visible and Near-Infrared Spectral Reflectance of Leaves: A Pot Study with Sunflower (<Emphasis Type="Italic">Helianthus annuus</Emphasis> L.)

The aim of this study was to monitor changes in leaf spectral reflectance due to phytoaccumulation of trace elements (Cd, Pb, and As) in sunflower mutant (M5 mutant line 38/R4-R6/15-35-190-04-M5) grown in spiked and in situ metal-contaminated potted soils. Reflectance spectra (350–2500 nm) of leaves were collected using portable ASD spectroradiometer, and respective leaves sample were analyzed for total metal contents. The spectral changes were quite noticeable and showed increased visible and decreased NIR reflectance for sunflower grown in soil spiked with 900 mg As kg^?1, and in in situ metal-contaminated soils. These changes also involved a blue-shift feature of red-edge position in the first derivatives spectra, studied vegetation indices and continuum removed absorption features at 495, 680, 970, 1165, 1435, 1780, and 1925 nm wavelength. Correlograms of leaf-metal concentration and reflectance values show highest degrees of overall correlation for visible, near-infrared, and water-sensitive wavelengths. Partial least square and multiple linear regression statistical models (cross-validated), respectively, based on Savitzky–Golay filter first-order derivative spectra and combination of spectral feature such as vegetation indices and band depths yielded good prediction of leaf-metal concentrations.     

面向土壤分类的高光谱反射特征参数模型

提出了一种无损、快速、成本低的土壤分类方法,选取松嫩平原4种典型土壤(黑土、黑钙土、风砂土和草甸土)耕层(0—20 cm)土样的实验室反射光谱数据作为研究对象,采用重采样、包络线消除法处理光谱数据,提取反映反射光谱特征的光谱特征参数,利用K均值聚类(K-means clustering)和决策树(decision tree)分别进行聚类分析和分类模型构建,实现土壤的快速分类。结果表明,利用表层土壤反射光谱特征参数构建的决策树分类模型可以对研究区土壤进行分类。研究成果有望加快土壤制图,为土壤理化性质的时空变化研究提供技术支持。     

Using in situ hyperspectral reflectance data to distinguish nine aquatic plant species

In situ hyperspectral reflectance data were studied at 50 bands (10 nm bandwidth) over the 400–900 nm spectral range to determine their potential for distinguishing among nine aquatic plant species: American lotus [Nelumbo lutea (Willd.) Pers.], American pondweed (Potamogeton nodusus Poir.), giant duckweed [Spirodela polyrrhiza (L.) Schleid.], Mexican waterlily (Nymphaea mexicana Zucc.), white waterlily (Nymphaea odorata Aiton), spatterdock [Nuphar lutea (L.) Sm.], giant salvinia (Salvinia molesta Mitchell), waterhyacinth [Eichhornia crassipes (Mart.) Solms] and waterlettuce (Pistia stratiotes L.). The species were studied on three dates: 30 May, 1 July and 3 August 2009. All nine species were studied in July and August, while only eight species were studied in May; giant duckweed was not studied in May due to insufficient availability. Two procedures were used to determine the optimum bands for discriminating among species: multiple comparison range tests and stepwise discriminant analysis. Multiple comparison range tests results for May showed that most separations among species occurred at bands 795–865 nm in the near-infrared (NIR) spectral region where up to six species could be distinguished. For July, few species could be distinguished amongthe 50 bands; most separations occurred at the 715 nm red-NIR edge band where four species could be differentiated. The optimum bands in August occurred in the green (525–595 nm), red (605–635 nm) and red-NIR edge (695–705 nm) spectral regions where up to six species could be distinguished. Stepwise discriminant analysis identified 11 bands in the blue, green, red-NIR edge and NIR spectral regions to be significant to discriminate among the eight species in May. For July and August, stepwise discriminant analysis identified 15bands and 13 bands, respectively, from the blue to NIR regions to be significant for discriminating among the nine species.     

Utility of Hyperspectral Data for Potato Late Blight Disease Detection

The study was carried out to investigate the utility of hyperspectral reflectance data for potato late blight disease detection. The hyperspectral data was collected for potato crop at different level of disease infestation using hand-held spectroradiometer over the spectral range of 325–1075 nm. The data was averaged into 10-nm wide wavebands, resulting in 75 narrowbands. The reflectance curve was partitioned into five regions, viz. 400–500 nm, 520–590 nm, 620–680 nm, 770–860 nm and 920–1050 nm. The notable differences in healthy and diseased potato plants were noticed in 770–860 nm and 920–1050 nm range. Vegetation indices, namely NDVI, SR, SAVI and red edge were calculated using reflectance values. The differences between the vegetation indices for plants at different levels of disease infestation were found highly significant. The optimal hyperspectral wavebands to discriminate the healthy plants from disease infested plants were 540, 610, 620, 700, 710, 730, 780 and 1040 nm whereas upto 25% infestation could be discriminated using reflectance at 710, 720 and 750 nm.     

Assessment of Late Blight Induced Diseased Potato Crops: A Case Study for West Bengal District Using Temporal AWiFS and MODIS Data

Remote sensing technology becomes an effective and inexpensive technique for detecting disease in vegetation. In this study, an attempt has been done to discriminate healthy and late blight affected crop using remote sensing based indices such as NDVI and LSWI. NDVI and LSWI spectral profiles between healthy and late blight affected crop shows large difference. Mean difference in reflectance between two acquired dates Jan. 10 and 29, 2009 crop clusters varied from 31.28 % in red band, 7.7 % in NIR band and 6.23 % in SWIR bands in healthy crops while in late blight affected crops it is ?15.5 % in red, 44.4 % in NIR and ?14.61 % in SWIR bands. Negative percentage differences in reflectance indicate reflectance increases from Jan. 10, 2009 to Jan. 29, 2009, while positive difference indicate decrease in reflectance between the two dates. Since potato is an irrigated crop, these differences in reflectance are attributed to prevalent disease at that time. It is found that severely affected areas are Bardhman, Arambag, Bishnupur, Ghatal and Hugli taluka with crop damage areas are 4036.66, 1138.68, 2025.23, 469.15, and 380.08 ha, respectively.     

Generation of Vegetation Fraction and Surface Albedo Products Over India from Ocean Colour Monitor (OCM) Data Onboard Oceansat-2

The use of Local Area Coverage (LAC) data from Ocean Color Monitor (OCM) sensor of Oceansat-2 with its high radiometric resolution (12 bits/pixel) and 2-day repeat cycle for rapid monitoring of vegetation growth and estimating surface albedo for the Indian region is demonstrated in this study. For the vegetation monitoring, normalized difference vegetation index (NDVI) and vegetation fraction (VF) products were estimated by maximum value composite approach fortnightly and were resampled to 1 km. The surface albedo products were realized by converting narrow-band eight-band spectral reflectance OCM data to a) visible (300–700 nm) and b) broad band (300–3,000 nm) data. For validation, the derived products were compared with respective MODIS global products and found to be in good agreement.     

Inversion of PROSAIL Model for Retrieval of Plant Biophysical Parameters

The current development of satellite technology particularly in the sensors like POLDER and MISR, has emphasized more on directional reflectance measurements (i.e. spectral reflectance of the target measured from different view zenith and azimuth angles) of the earth surface features mainly the vegetation for retrieval of biophysical parameters at regional scale using radiative transfer models. This approach being physical process based and uses directional reflectance measurement has been found to better and more reliable compared to the conventional statistical approach used till date and takes care of anisotropic nature (i.e. reflectance from the target is different if measured from different view angles) of the target. Keeping this in view a field experiment was conducted in mustard crop to evaluate the radiative transfer model for biophysical parameter retrieval through its inversion with the objectives set as (i) to relate canopy biophysical parameters and geometry to its bidirectional reflectance, (ii) to evaluate a canopy reflectance model to best represent the radiative transfer within the canopy for its inversion and (iii) to retrieve crop biophysical parameters through inversion of the model. Two varieties of the mustard crop (Brassica juncea L) were grown with two nitrogen treatments. The bidirectional reflectance data obtained at 5 nm interval for a range of 400–1100 nm were integrated to IRS LISS–II sensor’s four band values using Newton Cotes Integration technique. Biophysical parameters like leaf area index, leaf chlorophyll content, leaf length, plant height and average leaf inclination angle, biomass etc were estimated synchronizing with the bi-directional reflectance measurements. Radiative transfer model PROSAIL model was validated and its inversion was done to retrieve LAI and ALA. Look Up Table (LUT) of Bidirectional reflectance distribution function (BRDF) was prepared simulating through PROSAIL model varying only LAI (0.2 interval from 1.2 to 5.4 ) and ALA (5° interval from 40° to 55°) parameters and inversion was done using a merit function and numerical optimization technique given by Press et al. (1986). The derived LAI and ALA values from inversion were well matched with observed one with RMSE 0.521 and 5.57, respectively.     

Assessing the impact of hydrocarbon leakages on vegetation using reflectance spectroscopy

This paper assesses the capability of hyperspectral remote sensing to detect hydrocarbon leakages in pipelines using vegetation status as an indicator of contamination. A field experiment in real scale and in tropical weather was conducted in which Brachiaria brizantha H.S. pasture plants were grown over soils contaminated with small volumes of liquid hydrocarbons (HCs). The contaminations involved volumes of hydrocarbons that ranged between 2 L and 12.7 L of gasoline and diesel per m³ of soil, which were applied to the crop parcels over the course of 30 days. The leaf and canopy reflectance spectra of contaminated and control plants were acquired within 350–2500 nm wavelengths. The leaf and canopy reflectance spectra were mathematically transformed by means of first derivative (FD) and continuum removal (CR) techniques. Using principal component analysis (PCA), the spectral measurements could be grouped into either two or three contamination groups. Wavelengths in the red edge were found to contain the largest spectral differences between plants at distinct, evolving contamination stages. Wavelengths centred on water absorption bands were also important to differentiating contaminated from healthy plants. The red edge position of contaminated plants, calculated on the basis of FD spectra, shifted substantially to shorter wavelengths with increasing contamination, whereas non-contaminated plants displayed a red shift (in leaf spectra) or small blue shift (in canopy spectra). At leaf scale, contaminated plants were differentiated from healthy plants between 550–750 nm, 1380–1550 nm, 1850–2000 nm and 2006–2196 nm. At canopy scale, differences were substantial between 470–518 nm, 550–750 nm, 910–1081 nm, 1116–1284 nm, 1736–1786 nm, 2006–2196 nm and 2222–2378 nm. The results of this study suggests that remote sensing of B. brizantha H.S. at both leaf and canopy scales can be used as an indicator of gasoline and diesel contaminations for the detection of small leakages in pipelines.     

Surface Reflectance Climate Data Records (CDRs) is a Reliable Landsat ETM+ Source to Study Chlorophyll Content in Pecan Orchards

We evaluated the relationships among three Landsat Enhanced Thematic Mapper (ETM+) datasets, top-of-atmosphere (TOA) reflectance, surface reflectance climate data records (surface reflectance-_CDR) and atmospherically corrected images using Fast Line-of-Sight atmospheric analysis of Spectral Hypercubes model (surface reflectance-_FLAASH) and their linkto pecan foliar chlorophyll content(chl-cont). Foliar chlorophyll content as determined with a SPAD meter, and remotely-sensed data were collected from two mature pecan orchards (one grown in a sandy loam and the other in clay loam soil) during the experimental period. Enhanced vegetation index derived from remotely sensed data was correlated to chl-cont. At both orchards, TOA reflectance was significantly lower than surface reflectance within the 550–2400 nm wavelength range. Reflectance from atmospherically corrected images (surface reflectance-_CDR and surface reflectance-_FLAASH) was similar in the shortwave infrared (SWIR: 1550–1750 and 2080–2350 nm) and statistically different in the visible (350–700 nm). Enhanced vegetation index derived from surface reflectance-_CDR and surface reflectance-_FLAASH had higher correlation with chl-cont than TOA. Accordingly, surface reflectance is an essential prerequisite for using Landsat ETM+  data and TOA reflectance could lead to miss-/or underestimate chl-cont in pecan orchards. Interestingly, the correlation comparisons (Williams t test) between surface reflectance-_CDR and chl-cont was statistically similar to the correlation between chl-cont and commercial atmospheric correction model. Overall, surface reflectance-_CDR, which is freely available from the earth explorer portal, is a reliable atmospherically corrected Landsat ETM+ image source to study foliar chlorophyll content in pecan orchards.     

Detection of stress in tomatoes induced by late blight disease in California, USA, using hyperspectral remote sensing

Large-scale farming of agricultural crops requires on-time detection of diseases for pest management. Hyperspectral remote sensing data taken from low-altitude flights usually have high spectral and spatial resolutions, which can be very useful in detecting stress in green vegetation. In this study, we used late blight in tomatoes to illustrate the capability of applying hyperspectral remote sensing to monitor crop disease in the field scale and to develop the methodologies for the purpose. A series of field experiments was conducted to collect the canopy spectral reflectance of tomato plants in a diseased tomato field in Salinas Valley of California. The disease severity varied from stage 1 (the light symptom), to stage 4 (the sever damage). The economic damage of the crop caused by the disease is around the disease stage 3. An airborne visible infrared imaging spectrometer (AVIRIS) image with 224 bands within the wavelength range of 0.4–2.5 μm was acquired during the growing season when the field data were collected. The spectral reflectance of the field samples indicated that the near infrared (NIR) region, especially 0.7–1.3 μm, was much more valuable than the visible range to detect crop disease. The difference of spectral reflectance in visible range between health plants and the infected ones at stage 3 was only 1.19%, while the difference in the NIR region was high, 10%. We developed an approach including the minimum noise fraction (MNF) transformation, multi-dimensional visualization, pure pixels endmember selection and spectral angle mapping (SAM) to process the hyperspectral image for identification of diseased tomato plants. The results of MNF transformation indicated that the first 28 eigenimages contain useful information for classification of the pixels and the rest were mainly noise-dominated due to their low eigenvalues that had few signals. Therefore, the 28 signal eigenimages were used to generate a multi-dimensional visualization space for endmember spectra selection and SAM. Classification with the SAM technique of plants’ spectra showed that the late blight diseased tomatoes at stage 3 or above could be separated from the healthy plants while the less infected plants (at stage 1 or 2) were difficult to separate from the healthy plants. The results of the image analysis were consistent with the field spectra. The mapped disease distribution at stage 3 or above from the image showed an accurate conformation of late blight occurrence in the field. This result not only confirmed the capability of hyperspectral remote sensing in detecting crop disease for precision disease management in the real world, but also demonstrated that the spectra-based classification approach is an applicable method to crop disease identification.     

Study of fractional vegetation cover using high spectral resolution data

A field experiment was conducted to study the effect of vegetation cover on soil spectra and relationship of spectral indices with vegetation cover. Multi-date spectral measurements were carried out on twelve wheat fields. Five sets of measurements were taken during the growth period of wheat crop. Field reflectance data were collected in the range 350 to 1800 nm using ASD spectroradiometer. Analysis of data was done to select narrow spectral bands for estimation of ground cover. The ratio of reflectance from vegetation covered soil and reflectance from bare soil indicated that spectral reflectance at 670 and 710 nm are the most sensitive bands. Two bands in visible (670 and 560 nm), three bands in near infrared (710, 870 and 1100 nm) and three bands in middle infrared (1480, 1700 and 1800 nm) were found highly correlated with fractional cover. Vegetation indices developed using narrow band spectral data have been found to be better than those developed using broad- band data for estimation of ground cover.     

Studies on Textural and Compositional Characteristics of Sand and Clay Mixtures Using Hyperspectral Radiometry

This paper examines the hyperspectral signatures (in the Visible Near Infrared (VNIR)-Shortwave Infrared (SWIR) regions) of soil samples with varying colour and minerals. 36 samples of sands (from river and beach) with differing clay contents were examined using a hyperspectral radiometer operating in the 350–2,500 nm range, and the spectral curves were obtained. Analysis of the spectra indicates that there is an overall increase in the reflectance in the VNIR-SWIR region with an increase in the content of kaolinite clay in the sand samples. As regards the red and black clays and sand mixtures, the overall reflectance increases with decreasing clay content. Several spectral parameters such as depth of absorption at 1,400 nm and 1,900 nm regions, radius of curvature of the absorption troughs, slope at a particular wavelength region and the peak reflectance values were derived. There exists a correlation between certain of these spectral parameters (depth, slope, position, peak reflectance, area under the curve and radius of the curve) and the compositional and textural parameters of the soils. Based on these well-defined relations, it is inferred that hyperspectral radiometry in the VNIR and SWIR regions can be used to identify the type of clay and estimate the clay content in a given soil and thus define its geotechnical category.     

Predicting Wheat Grain and Biomass Yield Using Canopy Reflectance of Booting Stage

Field experiment was conducted in a sandy loam soil of Indian Agricultural Research Institute, New Delhi during the year 2011–13 to see the effect of irrigation, mulch and nitrogen on canopy spectral reflectance indices and their use in predicting the grain and biomass yield of wheat. The canopy reflectances were measured using a hand held ASD FieldSpec Spectroradiometer at booting stage of wheat. Four spectral reflectance indices (SRIs) viz. RNDVI (Red Normalized Difference Vegetation Index), GNDVI (Green Normalized Difference Vegetation Index), SR (Simple Ratio) and WI (Water Index) were computed using the spectral reflectance data. Out of these four indices, RNDVI, GNDVI and SR were significantly and positively related with the grain and biomass yield of wheat whereas WI was significantly and negatively related with the grain and biomass yield of wheat. Calibration with the second year data showed that among the SRIs, WI could account for respectively, 85 % and 86 % variation in grain and biomass yield of wheat with least RMSE (395 kg ha^?1 (15 %) for grain yield and 1609 kg ha^?1 (20 %) for biomass yield) and highest d index (0.95 for grain yield and 0.91 for biomass yield). Therefore it can be concluded that WI measured at booting stage can be successfully used for prediction of grain and biomass yield of wheat.     

Field Measurements of Plant Emissivity Spectra: An Experimental Study on Remote Sensing of Vegetation in the Thermal Infrared Region

Spectral features of plant species in the visible to SWIR (0.4–2.5 μm) region have been studied extensively, but scanty attention has been given to plant thermal infrared (TIR: 4–14 μm) properties. This paper presents preliminary results of a study that was conducted first time in India to measure radiance and emissivity properties of eight plant species in TIR spectral region in the field conditions using a FTIR (Fourier Transform Infrared) field spectroradiometer working in 4–14 μm at an agriculture experimental farm. Several spectral features in the emissivity spectra of plant species were observed that are probably related to the leaf chemical constituents, such as cellulose and xylan (hemicellulose) and structural aspects of leaf surface like abundance of trichomes and texture. Observations and results from the field measurements were supported by the laboratory measurements like biochemical analysis. These preliminary field emissivity measurements of leaves in TIR show that there is useful spectral information that may be detectable by field-based instrument. More detailed field and laboratory measurements are underway to explore this research theme.     

Spectroradiometric requirements for the reflective module of the airborne spectrometer ARES

The Airborne Reflective/Emissive Spectrometer is specified as a whisk-broom imaging spectrometer for remote sensing of land surfaces covering the wavelength regions 0.47-2.45 /spl mu/m and 8-12 /spl mu/m with 160 spectral bands. The instrument is being built by Integrated Spectronics, financed by the German Aerospace Agency (DLR) and the GeoResearch Centre Potsdam (GFZ) and will be available to the scientific community from end 2005 on. The spectroradiometric design is based on scientific requirements derived from three main application scenarios comprising vegetation, soil, and mineral sciences. Two of these are described in this letter. Measured or modeled reflectance spectra are input to a simulation model that calculates at-sensor radiance spectra, resamples them with the channel-specific response functions, adds different amounts of noise in the radiance domain, and performs a retrieval to get the corresponding noisy surface reflectance spectra. The retrieval results as a function of the sensor noise level are compared with the accuracy requirements imposed by the different application fields taking into account the technical boundary conditions. The final specifications account for the most demanding requirements of the three application fields: a spectral sampling distance of 13-14 nm in the 470-1800 nm region, and 12 nm in the 2000-2450-nm region. The required noise-equivalent radiances are 5, 3, and 2 nW/spl middot/cm/sup -2//spl middot/sr/sup -1//spl middot/nm/sup -1/ for the spectral regions 470-1000, 1000-1800, and 2000-2450 nm, respectively.     

Evaluation of linear discriminant and support vector machine classifiers for classification of nitrogen status in mature oil palm from SPOT-6 satellite images: analysis of raw spectral bands and spectral indices

Nitrogen (N) management is important in sustaining oil palm production. Remote sensing-based approaches via spectral index have promise in assessing the N nutrition content. The objectives of this study are; (i) to examine the N classification capability of three spectral indices (SI) such as visible (Vis), near infrared (NIR) and a combination of visible and NIR (Vis + NIR) from the SPOT-6 satellite, and (ii) to compare the performance of linear discriminant analysis (LDA) and support vector machine (SVM) in discriminating foliar N content of mature oil palms. Nitrogen treatments varied from 0 to 2 kg per palm. The N-sensitive SIs tested in this study were age-dependent. The Vis index (BGRI₁) (CVA = 79.55%) and Vis + NIR index (NDVI, NG, IPVI and GNDVI) (CVA = 81.82%) were the best indices to assess N status of young and prime mature palms through the SVM classifier.     

Leaf to canopy upscaling approach affects the estimation of canopy traits

In remote sensing applications, leaf traits are often upscaled to canopy level using sunlit leaf samples collected from the upper canopy. The implicit assumption is that the top of canopy foliage material dominates canopy reflectance and the variability in leaf traits across the canopy is very small. However, the effect of different approaches of upscaling leaf traits to canopy level on model performance and estimation accuracy remains poorly understood. This is especially important in short or sparse canopies where foliage material from the lower canopy potentially contributes to the canopy reflectance. The principal aim of this study is to examine the effect of different approaches when upscaling leaf traits to canopy level on model performance and estimation accuracy using spectral measurements (in-situ canopy hyperspectral and simulated Sentinel-2 data) in short woody vegetation. To achieve this, we measured foliar nitrogen (N), leaf mass per area (LMA), foliar chlorophyll and carbon together with leaf area index (LAI) at three vertical canopy layers (lower, middle and upper) along the plant stem in a controlled laboratory environment. We then upscaled the leaf traits to canopy level by multiplying leaf traits by LAI based on different combinations of the three canopy layers. Concurrently, in-situ canopy reflectance was measured using an ASD FieldSpec-3 Pro FR spectrometer, and the canopy traits were related to in-situ spectral measurements using partial least square regression (PLSR). The PLSR models were cross-validated based on repeated k-fold, and the normalized root mean square errors (nRMSE_cv) obtained from each upscaling approach were compared using one-way analysis of variance (ANOVA) followed by Tukey’s post hoc test. Results of the study showed that leaf-to-canopy upscaling approaches that consider the contribution of leaf traits from the exposed upper canopy layer together with the shaded middle canopy layer yield significantly (p < 0.05) lower error (nRMSE_cv < 0.2 for canopy N, LMA and carbon) as well as high explained variance (R² > 0.71) for both in-situ hyperspectral and simulated Sentinel-2 data. The widely-used upscaling approach that considers only leaf traits from the upper illuminated canopy layer yielded a relatively high error (nRMSE_cv>0.2) and lower explained variance (R² < 0.71) for canopy N, LMA and carbon. In contrast, canopy chlorophyll upscaled based on leaf samples collected from the upper canopy and total canopy LAI exhibited a more accurate relationship with spectral measurements compared with other upscaling approaches. Results of this study demonstrate that leaf to canopy upscaling approaches have a profound effect on canopy traits estimation for both in-situ hyperspectral measurements and simulated Sentinel-2 data in short woody vegetation. These findings have implications for field sampling protocols of leaf traits measurement as well as upscaling leaf traits to canopy level especially in short and less foliated vegetation where leaves from the lower canopy contribute to the canopy reflectance.     

Use of principal components of UAV-acquired narrow-band multispectral imagery to map the diverse low stature vegetation fAPAR

The fraction of absorbed photosynthetically active radiation (fAPAR) is an important plant physiological index that is used to assess the ability of vegetation to absorb PAR, which is utilized to sequester carbon in the atmosphere. This index is also important for monitoring plant health and productivity, which has been widely used to monitor low stature crops and is a crucial metric for food security assessment. The fAPAR has been commonly correlated with a greenness index derived from spaceborne optical imagery, but the relatively coarse spatial or temporal resolution may prohibit its application on complex land surfaces. In addition, the relationships between fAPAR and remotely sensed greenness data may be influenced by the heterogeneity of canopies. Multispectral and hyperspectral unmanned aerial vehicle (UAV) imaging systems, conversely, can provide several spectral bands at sub-meter resolutions, permitting precise estimation of fAPAR using chemometrics. However, the data pre-processing procedures are cumbersome, which makes large-scale mapping challenging. In this study, we applied a set of well-verified image processing protocols and a chemometric model to a lightweight, frame-based and narrow-band (10 nm) UAV imaging system to estimate the fAPAR over a relatively large cultivated land area with a variety of low stature vegetation of tropical crops along with native and non-native grasses. A principal component regression was applied to 12 bands of spectral reflectance data to minimize the collinearity issue and compress the data variation. Stepwise regression was employed to reduce the data dimensionality, and the first, third and fifth components were selected to estimate the fAPAR. Our results indicate that 77% of the fAPAR variation was explained by the model. All bands that are sensitive to foliar pigment concentrations, canopy structure and/or leaf water content may contribute to the estimation, especially those located close to (720 nm) or within (750 nm and 780 nm) the near-infrared spectral region. This study demonstrates that this narrow-band frame-based UAV system would be useful for vegetation monitoring. With proper pre-flight planning and hardware improvement, the mapping of a narrow-band multispectral UAV system could be comparable to that of a manned aircraft system.