Disruption of Sema3A expression causes abnormal neural projection in heavy oil exposed Japanese flounder larvae

It has been well known that oil spills cause serious problems in the aquatic organisms. In particular, some species of teleosts, which develop on the sea surface thought to be affected by heavy oil (HO). During the embryogenesis, the nervous system is constructed. Therefore, it is important to study the toxicological effects of HO on the developing neurons. We exposed HO to eggs of Japanese flounder (Paralichthys olivaceus) and investigated the neural disorder. In larvae exposed by HO at the concentration of 8.75 mg/L, the facial and lateral line nerves partially entered into the incorrect region and the bundle was defasciculated. Furthermore, in the HO-exposed larvae, Sema3A, a kind of axon guidance molecule, was broadly expressed in second pharyngeal arch, a target region of facial nerve. Taken together, we suggested the possibility that the abnormal expression of Sema3A affected by HO exposure causes disruption of facial nerve scaffolding.     

Regulation of iodothyronine deiodinases and sodium iodide symporter mRNA expression by perchlorate in larvae and adult Chinese rare minnow (Gobiocypris rarus)

Perchlorate is a widespread contaminant in the aquatic environment. In the present work, the expressions of deiodinase enzymes (d1, d2, and d3) and sodium iodide symporter (nis) genes were determined after larval and adult rare minnow (Gobiocypris rarus) exposed to 5 and 50 μg/L perchlorate for 21 days. The results showed that deflation of swim bladder development was observed in larvae at 50 μg/L perchlorate treatment. An up-regulation of the d2 and nis mRNA levels were observed in the larve and in brain of adults. Meanwhile the expressions of d3 mRNA levels were significantly down-regulated in the liver. These results indicate the changes in d2, nis, and d3 mRNA expression brings about increased outer-ring deiodination, idodine uptake, and a further decrease of inner-ring deiodination, respectively reflecting auto-regulation of hypothalamic-pituitary-thyroid (HPT) axis in adult after perchlorate exposure. The larval fish development could be affected by perchlorate at environmentally relevant concentrations.     

Respiration rate and swimming activity of larvae of two sub-tidal nassariid gastropods under reduced oxygen levels: Implications for their distributions in Hong Kong waters

The effects of hypoxia on the larvae of two sub-tidal nassariid gastropods, Nassarius siquijorensis and N. conoidalis were compared so as to understand how the species-specific tolerance to hypoxia might have resulted in changes in the abundance and distribution of these two species in the hypoxic Tolo Harbour, Hong Kong, since the 1980s. Respiration rates of N. siquijorensis and N. conoidalis larvae were reduced at 4.5 mg O₂ l⁻¹, or below, as compared with the normoxic control. Significant reduction in swimming velocity was also observed for 10-day old larvae which were exposed to <2.0 mg O₂ l⁻¹ for N. siquijorensis and <1.0 mg O₂ l⁻¹ for N. conoidalis. The 48 h LC₅₀ values of N. siquijorensis and N. conoidalis larvae were 0.7 and 1.7 mg O₂ l⁻¹, respectively. The results suggested that N. siquijorensis are more tolerant to hypoxia than N. conoidalis.     

Spawning ground and larval transport processes of jack mackerel Trachurus japonicus in the shelf-break region of the southern East China Sea

Horizontal distribution patterns of jack mackerel Trachurus japonicus larvae were investigated extensively in the East China Sea (ECS) along the shelf-break region between 26° and 30°N during February–March based on fine-scale larval sampling in 2002 and 2003. A total of 2363 T. japonicus ranging from 1.2 to 12.4 mm body length (BL) were collected at 310 bongo net sampling stations, of which larvae <10 mm BL accounted for 99.1%. In both years, newly hatched larvae (<3 mm BL) were concentrated in the shelf-break region mainly in the southern part of ECS between 26° and 27°N in warm water of 21–23 °C, suggesting that their primary spawning ground existed in and around this area. With growth, larvae were transported in two different directions, i.e., northward and northeastward, corresponding closely with the direction of the Kuroshio Branch Current north of Taiwan (KBCNT) and the Kuroshio, respectively. Replicate sampling cruises at 2 week intervals were conducted in 2003, and the larval distribution pattern changed significantly between the sampling cruises, suggesting that the transport process fluctuates over relatively short periods in relation to oceanographic processes. The transport speed by the KBCNT was estimated to be 0.13–0.28 knots based on the larval distribution, which is one order of magnitude slower than that by the Kuroshio (1.5–3 knots). Habitat temperature gradually declined with growth in both the Kuroshio and KBCNT, but in the KBCNT it was 1–2 °C lower than in the Kuroshio. Our results suggest that the two different larval transport processes lead to a significant difference in the transport route, habitat conditions (such as temperature and food), and site where young fish recruit to the demersal habitat, which will result in different survival and recruitment processes.     

Embryotoxic and genotoxic effects of heavy metals and pesticides on early life stages of Pacific oyster (Crassostrea gigas)

This study evaluated embryotoxicity and genotoxicity of two dissolved metals copper and cadmium (Cu and Cd) and two pesticides (metolachlor and irgarol) occurring in Arcachon Bay (SW France) in Pacific oyster (Crassostrea gigas) larvae and investigated the relationship between those two endpoints. Embryotoxicity was measured by calculating the percentage of abnormal D-shaped larvae and genotoxicity was evaluated with DNA strand breaks using the comet assay. After 24 h exposure, significant increases of the percentage of abnormal D-larvae and the DNA strand breaks were observed from 0.1 μg L⁻¹ for Cu, 10 μg L⁻¹ for Cd and 0.01 μg L⁻¹ for both irgarol and metolachlor in comparison with the controls. A strong positive relationship between embryotoxicity and genotoxicity was recorded for Cu, Cd and metolachlor. The current study suggests that copper, irgarol and metolachlor can induce larval abnormalities and DNA damage in a population of exposed oysters at environmentally relevant concentrations.     

Does heavy oil pollution induce bacterial diseases in Japanese flounder Paralichthys olivaceus?

As basic research for the effect of heavy oil on the fish immune system, in this study, the number of leukocyte was counted in Japanese flounder Paralichthys olivaceus, after exposure to heavy oil at a concentration of 30 g/8 L for 3 days. To compare the numbers of bacteria in the skin mucus between oil-exposed and control fish, viable bacteria were enumerated by counting colony forming unit (CFU). Compared with 5.79 ± 1.88 × 10⁷ leukocytes/mL in the controls, the exposed fish demonstrated higher counts, averaging 1.45 ± 0.45 × 10⁸ cells/mL. The bacterial numbers of control fish were 4.27 ± 3.68 × 10⁴ CFU/g, whereas they were 4.58 ± 1.63 × 10⁵ CFU/g in the exposed fish. The results suggest that immune suppression of the fish occurred due to heavy oil stressor, and bacteria could invade in the mucus, resulting in the increasing leukocyte number to prevent infectious disease.     

Spatial and temporal distribution of zooplankton related to the environmental conditions in the coral reef lagoon of New Caledonia,Southwest Pacific

The distribution of zooplanktonic prey of fish larvae was examined in three bays and two lagoonal stations in the Southwest lagoon of New Caledonia. Water column conditions were characterized by increasing chlorophyll a and particulate organic matter (POM) concentrations from the lagoon to the estuarine bay. The mean zooplankton settled volume and total density were significantly higher in the estuarine bay, reaching 35.1 mL m⁻³ and 3.5 × 10⁵ individuals m⁻³, respectively. The total zooplankton density also progressively increased along the sampling period. The composition of assemblages differed between the lagoon and the bays, and was similar in the three bays. Wind speed, surface temperature, chlorophyll a and POM explained these variations, as revealed by a co-inertia analysis (COIA). The prey preferred by fish larvae, i.e. small crustaceans and small copepods, were more abundant in bays. Sheltered bays, most influenced by terrigenous inputs, are likely to provide the best feeding conditions.     

Degradation of crude oil in a contaminated tidal flat area and the resilience of bacterial community

Crude oil spills, Hebei Spirit in South Korea, is considered as one of the worst environmental disasters of the region. Our understanding on activation of oil-degrading bacteria and resilience of microbial community in oil contaminated sites are limited due to scarcity of such event. In the present study, tidal flat sediment contaminated by the oil spill were investigated for duration of 13 months to identify temporal change in microbial community and functional genes responsible for PAH-degradation. The results showed predominance of previously known oil-degrading genera, such as Cycloclasticus, Alcanivorax, and Thalassolituus, displaying significant increase within first four months of the accident. The disturbance caused by the oil spill altered the microbial community and its functional structures, but they were almost restored to the original state after 13 months. Present study demonstrated high detoxification capacity of indigenous bacterial populations in the tidal flat sediments and its resilience of microbial community.     

Tolerance of Brazilian brain coral Mussismilia braziliensis to sediment and organic matter inputs

In Brazil, where reefs occur in markedly turbid environments, the relationship between sedimentation/organic matter and corals is poorly known. Thus, the ex situ effects of sediment with and without organic matter over the ΔF/Fm and physical state of Mussismilia braziliensis were analyzed. The ΔF/Fm and coral physical state, evaluated through the susceptibility index to sedimentation (SI), were measured in seven colonies exposed to sedimentation (0–450 mg cm⁻² day⁻¹) free of organic matter after 45 days of exposure, and in 12 colonies exposed to sedimentation (0–500 mg cm⁻² day⁻¹) with organic matter content (10%), in which case ΔF/Fm was measured after 72 h and SI after 120 h. In both cases there were effects of increasing sedimentation on the SI with no effect on ΔF/Fm. Despite the tolerance to high sedimentation rates shown by this coral, we noted that the presence of organic matter might reduce its tolerance to sedimentation stress.     

Changes in diet and niche breadth of a small fish species in response to the flood pulse in a Neotropical floodplain lake

This study tested the hypothesis that the flood pulse affects the diet composition and the niche breadth of Moenkhausia forestii, a small characid fish inhabiting the littoral zone of lakes. To this end, we compared the diet composition (at the population and individual levels) between hydrological periods (high and low water phases) in a floodplain lake of the Upper Paraná River. PERMANOVA revealed differences in the diet between periods (pseudoF_1,38 = 8.5; p < 0.001), with predominant consumption of chironomid larvae and Ephemeroptera (aquatic resources) in the low-water period and an increase in the contribution of terrestrial resources (Hymenoptera, Coleoptera, and Orthoptera) during the high-water period. Based on the PERMDISP results, inter-individual variability in M. forestii diet also differed between periods (F_1,38 = 5.80; p = 0.02), with higher values during the high-water period resulting in a dietary niche expansion. During the low-water period, we observed the dominance of chironomid larvae in the diets of most individuals, resulting in lower inter-individual variability and thus narrower niche breadth. The diet of M. forestii was affected by the flood pulse at both the population and individual levels. The most important difference was found in the origin of food items; during the low-water period, the diet consisted mainly of aquatic resources, and during the high-water period, there was a large contribution of terrestrial resources. This variation is related to the increased availability of allochthonous resources in the high period, when terrestrial areas are flooded by the overflow of the river, thereby increasing the input of resources into the aquatic environment. The increased availability of food resources during this period allowed the expansion of the trophic niche of M. forestii, accompanied by the highest richness (19 items) and the highest evenness of food items. Our findings demonstrated that the flood pulse affected the composition of the M. forestii diet at both the population and individual levels. These results support the importance of the flood pulse, which connects aquatic and terrestrial ecosystems, in providing food resources for fish.     

Assessing the footprint and volume of oil deposited in deep-sea sediments following the Deepwater Horizon oil spill

The lateral and vertical extents of Macondo oil in deep-sea sediments resulting from the 2010 Deepwater Horizon oil spill were determined using chemical forensics and geostatistical kriging of data from 2397 sediment samples from 875 cores collected in 2010/2011 and 2014. The total mass of Macondo-derived hopane on the seafloor in 2010/2011 was conservatively estimated between 2.00 and 2.26 metric tons, derived from 219,000 to 247,000 barrels of oil; or 6.9 to 7.7% of the 3.19 million barrels spilled. Macondo-derived hopane was deposited over 1030 to 1910 km² of the seafloor, mostly (> 97%) in surface (0–1 cm) and near-surface (1–3 cm) sediments, which is consistent with short-term oil deposition. Although Macondo oil was still present in surface sediments in 2014, the total mass of Macondo-derived hopane was significantly lower (~ 80 to 90%) than in 2010/2011, affirming an acute impact from the spill and not long-term deposition from natural seeps.     

Effects of turbulence motion on the growth and physiology of aquatic plants

Growth, stem morphology and some biochemical parameters were studied of one completely submerged (Myriophyllum spicatum) and two floating leaved macrophytes (Nymphoides peltata and Trapa japonica) under different turbulence velocities. The root mean square velocities of the high, medium and low amount of turbulence that was generated for the experiment were 2.18 ± 0.66, 1.48 ± 0.26 and 0.70 ± 0.07 cm s⁻¹, respectively, in the microcosm. All three experimental plants survived exposed to all turbulence conditions provided, although a decrease in shoot elongation rate was associated with an increase in turbulence. Acceleration of tissue H₂O₂ generation and MDA content increased during the study period in all plant species. Oxidative enzymatic activities (POD, IAA and CKX) increased with time in plants under medium and high turbulence velocities. The shoot elongation rate, stem and leaf diameter, chlorophyll content and carbohydrate fractionations were found to be affected by this abiotic stress. It is evident from this study that high turbulence velocity inhibits normal metabolic activities of all three plants, while low to medium turbulence does not harm the floating leaved plants. Moreover, floating leaved plants were found to possess highly capable strategies to cope with this mechanical stress than completely submerged species.     

Lethal and estrogenic effects of 4-nonylphenol in the cockle Cerastoderma glaucum

The lethal and sublethal effects of the xenoestrogen 4-nonylphenol (NP) were evaluated in the cockle Cerastoderma glaucum. In a 96-h lethality test, bivalves were exposed to 0, 0+ acetone, 0.19, 0.38, 0.75, 1.5 and 3.0 mg NP/l. The 96-h LC₅₀ value was 0.3 mg NP/l. No mortality was observed at 0.1 mg NP/l. The potential estrogenicity of NP was studied in both sexually undifferentiated (resting phase) and differentiated (pre-spawning phase) cockles, exposed for 7 and 14 days to 0, 0+ acetone, 0.0125, 0.025, 0.05, and 0.1 mg NP/l. Vitellogenin (Vg)-like protein levels were determined in both haemolymph and digestive gland by the alkali-labile phosphate (ALP) assay. In the resting phase, exposure for 7 days to 0.1 mg NP/l resulted in significant increases in ALP in both haemolymph and digestive gland, compared with controls. A significant increase was also observed in digestive gland of animals exposed to 0.0125 mg NP/l-exposed animals. After 14 days of exposure, haemolymph ALP levels were significantly increased in exposed animals at all NP concentrations tested, whereas no difference was recorded in digestive gland. In the pre-spawning phase, exposure for 7 days to NP significantly increased ALP levels in haemolymph from males exposed at all NP concentrations tested, whereas no significant variations were found in haemolymph from females. NP (0.05 and 0.1 mg/l) was also shown to increase ALP concentrations significantly in digestive gland of males, but not in those of females. Likewise, after 14 days’ exposure, ALP levels significantly increased in haemolymph from males only at 0.1 mg NP/l. Conversely, NP caused significant increases in ALP levels in digestive gland from both males (at all NP concentrations tested) and females (at 0.025 and 0.1 mg NP/l). These results demonstrate that NP induces Vg synthesis in C. glaucum. Interestingly, males were more responsive to NP than females.     

The equivalent dose of different grain size quartz fractions from lakeshore sediments in the arid region of north China

Equivalent dose (D_e) values were measured by using medium aliquots of different grain size quartz fractions of five lakeshore sediments from the arid region of north China. There are two different relationships between D_e values and grain sizes of these five samples. The first relationship is that the D_e values obtained from various grain sizes are in agreement within 1 delta errors. The second relationship is that D_e values are similar to each other for fractions between 125 and 300 μm, while the D_e value of the 63–90 μm fraction is 40～55% smaller than others. For example, the D_e values obtained for sample #3 are 20.15 ± 1.19 Gy, 19.80 ± 0.83 Gy and 20.93 ± 1.06 Gy for fractions of 90–125, 125–150 and 250–300 μm respectively, but are 10.79 ± 0.84 Gy for the 63–90 μm fraction. The second relationship can't be interpreted by previous studies of both dosimetry and heterogeneous bleaching. It is deduced for sample #2, #3 and #6 that fine particles (<90 μm) intruded after the dominant sedimentation. Comparison of OSL ages from different grain size fractions of sample #2 with a radiocarbon age from the same lithologic layer supports that fractions coarser than 125 μm yield more reliable burial ages, while the fraction finer than 90 μm yields underestimated ages for some lakeshore sediments from this arid region.     

Contrasting key roles of Ruppia cirrhosa in a southern Mediterranean lagoon: Reservoir for both biodiversity and harmful species and indicator of lagoon health status

The distribution of Ruppia cirrhosa meadow density and its epiphytic organisms in relation with environmental factors were studied in summer 2011 at five stations in the Ghar El Melh lagoon (GML; southern Mediterranean Sea). Eleven epiphytic groups were recognised among which diatoms and dinoflagellates were the dominant groups and greatest contributors to temporal dissimilarity. An overwhelming concentrations of harmful microalgae was recorded, mainly represented by the toxic dinoflagellate Prorocentrum lima with maximal concentrations attaining 6 × 10⁵ cells 100 g⁻¹ of Ruppia fresh weight. The epifauna community accounted for only 1.4% of total epiphyte abundance and was comprised predominantly of nematodes (47.51%), ciliates (32.59%), fish eggs (7.2%) and larvae (4.95%). PERMANOVA analyses revealed a significant spatio-temporal variation of all epiphytic groups (p < 0.01). In this study, R. cirrhosa and its epiphytes were studied as potential early warning indicators of the health status of GML waters.     

Effects of starvation on bacterial transport through porous media

A major problem preventing widespread implementation of microbial injection strategies for bioremediation and/or microbially enhanced oil recovery is the tendency of bacteria to strongly adhere to surfaces in the immediate vicinity of the injection point. Long term (weeks to months) nutrient starvation of bacteria prior to injection can decrease attachment and enhance transport through porous media. This paper summarizes results of starvation-enhanced transport experiments in sand columns of 30 cm, 3 m, and 16 m in length. The 16 m column experiments compared transport, breakthrough and distribution of adhered cells for starved and vegetative cultures of Klebsiella oxytoca, a copious biofilm producer. Results from these experiments were subsequently used to design and construct a field-scale biofilm barrier using starved Pseudomonas fluorescens. The 30 cm and 3 m sand columns experiments investigated starvation-enhanced transport of Shewanella algae BrY, a dissimilatory metal-reducing bacterium. In both cases the vegetative cells adsorbed onto the sand in higher numbers than the starved cells, especially near the entrance of the column. These results, taken together with studies cited in the literature, indicate that starved cells penetrate farther (i.e. higher breakthrough concentration) and adsorb more uniformly along the flow path than vegetative cells.     

Structure of residual oil as a function of wettability using pore-network modelling

In the water flooding of mixed-wet porous media, oil may drain down to relatively low residual oil saturations (S_or). Various studies have indicated that such low saturations can only be reached when oil layers in pore corners are included in the pore-scale modelling. These processes within a macroscopic porous medium can be modelled at the pore-scale by incorporating the fundamental physics of capillary dominated displacement within idealised pore network models. Recently, the authors have developed thermodynamic criteria for oil layer existence in pores with non-uniform wettability which takes as input geometrically and topologically representative networks, to calculate realistic S_or values for mixed-wet and oil-wet sandstones [16, 21]. This previous work is developed in this paper to include (i) the visualisation of the 3D structure of this residual oil, and (ii) a statistical analysis of this “residual/remaining” oil. Both the visualisation and the statistical analysis are done under a wide range of wettability conditions, which is reported for the first time in this paper.The structure of residual oil for strongly water wet systems is well known (where residual = remaining oil) and our model agrees with this but this structure changes radically for mixed wet systems (where residual ≠ remaining) and this has not yet been visualised experimentally. We find that for more water-wet systems high final residual oil saturations are reached at relatively small amounts of water injected and this oil is present in the pores as bulk oil. On the other hand, for more oil-wet systems we find a slow decrease of the amount of remaining oil with increasing amounts of injected water. During the process, the remaining connectivity of the oil phase is increasingly provided by oil layers only, hence the slow drainage. The final residual oil saturation, only reached in the theoretical limit of an infinite amount of injected water, is almost entirely contained in large number of (relatively low volume) oil layers, which are present in pores of most radius sizes.     

The unique environment of the most acidified permanently meromictic lake in the Czech Republic

Changes in the water properties and biological characteristics of the highly acidic Hromnice Lake (Western Bohemia) were investigated. This 110-year-old lake, formed as a consequence of the mining of pyritic shales, is permanently meromictic. Two chemoclines separate an extremely acidic (pH ～ 2.6) mixolimnion from a metal-rich anoxic monimolimnion. The absence of spring mixolimnetic turnover due to ice melting and very slow heat propagation through the chemocline with a 6-month delay were observed. Extreme mixolimnetic oxygen maxima (up to 31 mg l^?1) in phosphorus-rich lake (PO₄^3? up to 1.6 mg l^?1) well correlated with outbursts of phytoplankton. Phytoplankton consist of several acido-tolerant species of the genera Coccomyxa, Lepocinclis, Chlamydomonas and Chromulina. Surface phytoplankton biomass expressed as chlorophyll-a varies from 2 to 140 μg l^?1. Multicellular zooplankton are almost absent with the exception of Cephalodella acidophila, a small rotifer occurring in low numbers. Large red larvae of the midge Chironomus gr. plumosus were found at the bottom close to the shore, with larvulae in the open water. Developmental stages (protonemata) of a moss, resembling filamentous algae, dwell in the otherwise plant-free littoral zone.     

Effect of mercury and cadmium on early life stages of Java medaka (Oryzias javanicus): A potential tropical test fish

Several organisms have been used as indicators, bio-monitoring agents or test organisms in ecotoxicological studies. A close relative of the well established Japanese medaka, the Java medaka (Oryzias javanicus), has the potential to be a test organism. The fish is native to the estuaries of the Malaysian Peninsula, Thailand, Indonesia and Singapore. In this study, newly fertilised eggs were exposed to different concentrations of Cd and Hg. Observations were done on the development of the embryos. Exposure to low levels of Cd and Hg (0.01–0.05 ppm) resulted in several developmental disorders that led to death. Exposure to ⩾1.0 ppm Cd resulted in immediate developmental arrest. The embryos of Java medaka showed tolerance to a certain extent when exposed to ⩾1.0 ppm Hg compared to Cd. Based on the sensitivity of the embryos, Java medaka is a suitable test organism for ecotoxicology in the tropical region.     

The active fault system of SW Alps

Historical and active seismicity in the south-western Alps (France and Italy) shows the recurrence of relatively high-magnitude earthquakes (M ≥ 5.8), like the one that recently affected the Italian Apennine range (M = 6.3 on the 30th March 2009). However, up-to-date detailed mapping of the active fault network has been poorly established. The evaluation of seismological hazard in particular in the highly populated French and Italian coastal region cannot be done without this. Here, we present a detailed study of the main active fault system, based on geological observations along the south-western flank of the Alpine arc. This N140° right-lateral strike-slip active fault system runs along the edge of the Argentera-Mercantour range and can be followed down to the Mediterranean Sea. It is evidenced by (1) Holocene offsets of glacial geomorphology witnessing ongoing fault activity since 10 ka, (2) widespread recent (10–20 Ma) pseudotachylytes featuring long term activity of the faults, (3) active landslides along the main fault zone, (4) geothermal anomalies (hot springs) emerging in the active faults, (5) ongoing low-magnitude seismic activity and (6) localization of the main historical events. In the light of our investigations, we propose a new tectonic pattern for the active fault system in the south-western Alps.