The hot spring and geyser sinters of El Tatio, Northern Chile

The siliceous sinter deposits of El Tatio geothermal field in northern Chile have been examined petrographically and mineralogically. These sinters consist of amorphous silica (opal-A) deposited around hot springs and geysers from nearly neutral, silica-saturated, sodium chloride waters. Water cooling and evaporation to dryness are the main processes that control the opal-A deposition in both subaqueous and subaerial settings, in close spatial relation to microbial communities. All fingerprints of organisms observed in the studied sinter samples represent microbes and suggest that the microbial community is moderately diverse (cyanobacteria, green bacteria, and diatoms). The most important ecological parameter is the temperature gradient, which is closely related to the observed depositional settings: 1) Geyser setting: water temperature = 70–86 °C (boiling point at El Tatio: 4200 m a.s.l.); coarse laminated sinter macrostructure with rapid local variations; biota comprises non-photosynthetic hyperthermophilic bacteria. 2) Splash areas around geysers: water temperature = 60–75 °C; laminated spicule and column macrostructure, locally forming cupolas (< 30 cm); predominant Synechococcus-like cyanobacteria. 3) Hot spring setting: water temperature = 40–60 °C; laminated spicules and columns and subspherical oncoids characterize the sinter macrostructure; filamentous cyanobacteria Phormidium and diatoms (e.g., Synedra sp.) are the most characteristic microbes. 4) Discharge environments: water temperature = 20–40 °C; sinter composed of laminated spicules and oncoids of varied shape; cyanobacterial mats of Phormidium and Calothrix and diatoms (e.g., Synedra sp.) are abundant. El Tatio is a natural laboratory of great interest because the sedimentary macrostructures and microtextures reflect the geological and biological processes involved in the primary deposition and early diagenesis of siliceous sinters.     

Mercury in water and biomass of microbial communities in hot springs of Yellowstone National Park,USA

Ultra-clean sampling methods and approaches typically used in pristine environments were applied to quantify concentrations of Hg species in water and microbial biomass from hot springs of Yellowstone National Park, features that are geologically enriched with Hg. Microbial populations of chemically-diverse hot springs were also characterized using modern methods in molecular biology as the initial step toward ongoing work linking Hg speciation with microbial processes. Molecular methods (amplification of environmental DNA using 16S rDNA primers, cloning, denatured gradient gel electrophoresis (DGGE) screening of clone libraries, and sequencing of representative clones) were used to examine the dominant members of microbial communities in hot springs. Total Hg (THg), monomethylated Hg (MeHg), pH, temperature, and other parameters influential to Hg speciation and microbial ecology are reported for hot springs water and associated microbial mats.Several hot springs indicate the presence of MeHg in microbial mats with concentrations ranging from 1 to 10 ng g⁻¹ (dry weight). Concentrations of THg in mats ranged from 4.9 to 120,000 ng g⁻¹ (dry weight). Combined data from surveys of geothermal water, lakes, and streams show that aqueous THg concentrations range from l to 600 ng L⁻¹. Species and concentrations of THg in mats and water vary significantly between hot springs, as do the microorganisms found at each site.     

The algal community at an ecocline of a cold sulphidic spring (Sovra artesian borehole,Slovenia)

The physicochemical parameters of the sulphide spring water from a 500?m deep artesian borehole in Sovra Valley (Slovenia) are stable, with very little variation: temperature, 9.2 ± 0.0 °C; pH 7.70 ± 0.11; specific electrical conductivity, 777 ± 8 μS/cm; and dissolved oxygen, 0.19 ± 0.11 mg/l. The water from the borehole is hard, rich in sulphates, and has a notable concentration of sulphide, while it is low in chlorides. Communities of phototrophs were analysed at the oxygenic ecocline at the outflow from the borehole, and from further downstream. Caloneis tenuis, Frustulla vulgaris, Gomphonema sp., Navicula radiosa, Oscillatoria sp., and Tribonema vulgare successfully thrive exclusively at the outflow from the borehole under sub-optimum conditions for the majority of phototrophs. Downstream from the borehole, where the hydrogen sulphide degasses, autotrophic biofilms were dominated by different diatoms. The Bray–Curtis similarity index confirms the distinctive phototrophic communities along the oxygenic ecocline downstream from the sulphidic spring. The sulphidic ecocline downstream from the spring is indicative of the composition of phototrophic communities, as some species appear only downstream from the spring. An ecocline downstream from the borehole of the sulphidic spring was reflected also in the bacterial indicator groups. This study brings novel insights to the limited knowledge in the field of oxygenic phototrophy related to sulphidic springs.     

External controls on the distribution,fabrics and mineralization of modern microbial mats in a coastal hypersaline lagoon,Cayo Coco (Cuba)

Active, carbonate‐mineralizing microbial mats flourish in a tropical, highly evaporative, marine‐fed lagoonal network to the south of Cayo Coco Island (Cuba). Hypersaline conditions support the development of a complex sedimentary microbial ecosystem with diverse morphologies, a variable intensity of mineralization and a potential for preservation. In this study, the role of intrinsic (i.e. microbial) and extrinsic (i.e. physicochemical) controls on microbial mat development, mineralization and preservation was investigated. The network consists of lagoons, forming in the interdune depressions of a Pleistocene aeolian substratum; they developed due to a progressive increase in sea‐level since the Holocene. The hydrological budget in the Cayo Coco lagoonal network changes from west to east, increasing the salinity. This change progressively excludes grazers and increases the saturation index of carbonate minerals, favouring the development and mineralization of microbial mats in the easternmost lagoons. Detailed mapping of the easternmost lagoon shows four zones with different flooding regimes. The microbial activity in the mats was recorded using light–dark shifts in conjunction with microelectrode O₂ and HS^? profiles. High rates of O₂ production and consumption, in addition to substantial amounts of exopolymeric substances, are indicative of a potentially strong intrinsic control on mineralization. Seasonal, climate‐driven water fluctuations are key for mat development, mineralization, morphology and distribution. Microbial mats show no mineralization in the permanently submersed zone, and moderate mineralization in zones with alternating immersion and exposure. It is suggested that mineralization is also driven by water‐level fluctuations and evaporation. Mineralized mats are laminated and consist of alternating trapping and binding of grains and microbially induced magnesium calcite and dolomite precipitation. The macrofabrics of the mats evolve from early colonizing Flat mats to complex Cerebroid or Terrace structures. The macrofabrics are influenced by the hydrodynamic regime: wind‐driven waves inducing relief terraces in windward areas and flat morphologies on the leeward side of the lagoon. Other external drivers include: (i) storm events that either promote (for example, by bioclasts covering) or prevent (for example, by causing erosion) microbial mat preservation; and (ii) subsurface degassing, through mangrove roots and desiccation cracks covered by Flat mats (i.e. forming Hemispheroids and Cerebroidal structures). These findings provide in‐depth insights into understanding fossil microbialite morphologies that formed in lagoonal settings.     

Processes of carbonate precipitation in modern microbial mats

Microbial mats are ecosystems that arguably greatly affected the conditions of the biosphere on Earth through geological time. These laminated organosedimentary systems, which date back to > 3.4 Ga bp, are characterized by high metabolic rates, and coupled to this, rapid cycling of major elements on very small (mm-µm) scales. The activity of the mat communities has changed Earth's redox conditions (i.e. oxidation state) through oxygen and hydrogen production. Interpretation of fossil microbial mats and their potential role in alteration of the Earth's geochemical environment is challenging because these mats are generally not well preserved.Preservation of microbial mats in the fossil record can be enhanced through carbonate precipitation, resulting in the formation of lithified mats, or microbialites. Several types of microbially-mediated mineralization can be distinguished, including biologically-induced and biologically influenced mineralization. Biologically-induced mineralization results from the interaction between biological activity and the environment. Biologically-influenced mineralization is defined as passive mineralization of organic matter (biogenic or abiogenic in origin), whose properties influence crystal morphology and composition. We propose to use the term organomineralization sensu lato as an umbrella term encompassing biologically influenced and biologically induced mineralization. Key components of organomineralization sensu lato are the “alkalinity” engine (microbial metabolism and environmental conditions impacting the calcium carbonate saturation index) and an organic matrix comprised of extracellular polymeric substances (EPS), which may provide a template for carbonate nucleation. Here we review the specific role of microbes and the EPS matrix in various mineralization processes and discuss examples of modern aquatic (freshwater, marine and hypersaline) and terrestrial microbialites.     

The microbial community in the layered sediments at Laguna Figueroa,Baja California,Mexico: Does it have Precambrian analogues?

In the hypersaline lagoon at Laguna Figueroa vertically stratified diverse communities of microorganisms thrive. The modern sediments of Baja California at Laguna Figueroa contain cyanobacterial communities and sedimentary structures produced by these blue greens that have already been studied by Horodyski and his colleagues. This paper provides an introduction to the complex microbial communities, primarily those that underlie the laminated Microcoleus mats. They are composed of anaerobic photosynthetic and heterotrophic bacteria.The following genera of cyanobacteria at least are components of these mat communities: Lyngbya, Microcoleus, Entophysalis, Phormidium, Pseudoanabaena, Anabaena and Schizothrix. Among the photosynthetic bacteria several species of Thiocapsa-like microbes formed major surface components of certain mats and scums; rhodospirilli, rhodopseudomonads, chromatis and others were seen.The following nonphotosynthetic bacteria were identified: Nocardia sp., three types of spirilli, two types of Spirochaeta sp., two types of Desulfovibria sp., a new strain of red Beneckea and four distinctive unidentified coccoid and filamentous bacteria. Reasons are given for believing several of the species are new to science and that the microbial diversity is far greater than the approximately twenty species reported here. Eukaryotes are extremely rare. Only one species of animal, a herpachtechoid copepod, was ever seen in the 8-km long microbial communities of the hypersaline basin. Dunaliella salina, a chlorophyte and Aspergillus sydowi, an ascomycetous fungus were the only eukaryotes that were observed to be regular components of mat communities. Ciliates, amoebae (including a chrysarchnion-like microbe) and diatom tests, mostly empty, were the only other eukaryotes observed. Attempts to enrich for eukaryotic microorganisms were not successful whereas attempts to enrich for bacteria, especially anaerobes led to such a profusion of forms that to continue detailed study of them was beyond our means. Unidentified small rods and cocci constituted the largest fraction of individuals in the subsurface community. The microbes isolated from mats are adapted for alternating dry and wet conditions as well as high concentrations of salt and low concentrations of oxygen.     

Microbial Mats in Tibetan Hot Springs and their Contributions to the Cesium‐bearing Geyserite Ore Formation

Microbial mats, mainly dominated by filamentous algae Calothrix and Oscillatoria, are well developed in Tibetan hot springs. A great number of fossil microorganisms, which existed as algae lamination in thermal depositional cesium-bearing geyserite in this area, are identified as Calothrix and Oscillatoria through microexamination and culture experiments. These microbial mats show the ability to accumulate cesium from spring water to the extent of cesium concentration of 0.46–1.03% cell dry weight, 900 times higher than that in water, and capture large numbers of cesium-bearing opal grain. Silicon dioxide colloid in spring water replaces and fills with the organism and deposits on it to form algae laminated geyserite after dehydration and congelation. Cesium in the microbial mats and opal grain is then reserved in the geyserite. Eventually, cesium-bearing algae laminated geyserite is formed. Study on cesium distribution in geyserite also shows that cesium content in algae lamination, especially in heavily compacted algae lamination, is higher than in the opal layer. For geyserite with no algae lamination or other organism structure, which is generally formed in spring water with low silicon content, cesium accumulation and cesium-bearing opal grain assembled by the microbial mats are also indispensable. After the microbial mats accumulating cesium from spring water, silicon dioxide colloid poorly replaces and fills with the organism to form opal grain-bearing tremellose microbial mats. The shape and structure of the organisms are then destroyed, resulting in cesium-bearing geyserite with no algae lamination structure after dehydration and congelation. It is then concluded that microbial mats in the spring area contribute to the enrichment of cesium in the formation of cesium-bearing geyserite, and a biological genesis of the geyserite, besides of the physical and chemical genesis, is likely.     

Ultrastructural Evidence for a Novel Accumulation of Ca in a Microbial Mat from a Slight Acidic Hot Spring

<正>Microbial mats are ecosystems that can control or induce the precipitation of calcium(Ca) carbonate on Earth through geological time.In the present study,we report on a novel accumulation of Ca,together with iron(Fe),in a microbial mat collected from a slight acidic hot spring(pH=5.9) in south China.Combining an array of approaches,including environmental scanning electron microscopy,X-ray microanalysis,transmission electron microscopy,and selected area electron diffraction,we provide ultrastructral evidence for amorphous acicular aggregates containing Ca and Fe associated with cyanobacteria precipitating in the microbial mats.Cyanobacterial photosynthesis and exopolymeric organic matrixes are considered to be responsible for the precipitation of Ca.These amorphous acicular aggregates might imply the early stage of calcification occurring in microbial mats.Ca and Fe coprecipitation indicates another potential important way of inorganic element precipitation in hot spring microbial mats.Our results provide insight into the possible mechanism of cyanobacterial calcification and microfossil preservation in slight acidic hot spring environments.     

Biomediated Precipitation of Calcium Carbonate in a Slightly Acidic Hot Spring, Yunnan Province

A slightly acidic hot spring named "Female Tower"(t=73.5°C, pH=6.64) is located in the Jifei Geothermal Field, Yunnan Province, southwestern China. The precipitates in the hot spring are composed of large amounts of calcite, aragonite and sulfur. Scanning electron microscopy(SEM) analyses reveal that the microbial mats were formed from various coccoid or rod-shaped filamentous microbes. Transmission electron microscopy(TEM) shows that the intracellular sulfur granules are commonly associated with these microbes. A culture-independent molecular phylogenetic analysis demonstrates that the majority of the bacteria in the spring are sulfur-oxidizing bacteria. In the spring water, H_2S concentration is up to 60 ppm, while SO_4~(2-) concentration is only about 10 ppm. We speculate that H_2S might derive from sulfur-oxidizing bacteria in this hot spring water, leading to the intracellular formation of sulfur granules. Meanwhile, this reaction increased the p H in the micronscale microdomains, which fosters the precipitation of calcium carbonate in the microbial mats. The results of this study indicate that the sulfur-oxidizing bacteria might play an important role in calcium carbonate precipitation in slightly acidic hot spring environments.     

Role of microorganisms in oceanic anoxic events (OAEs)

The accumulation of organic matter (OM) during oceanic anoxic events (OAEs) that took place in the Mesozoic may reflect different biogeochemical pathways and feedbacks related to palaeoenvironmental changes. It originates from a combination of nutrient cycling, metal concentrations and position of the chemocline and/or pycnocline controlling biological production. Because ocean stagnation cannot induce euxinia, an expanded oxygen minimum zone (OMZ) associated with upwelling and improved hydrological cycles is more commonly accepted. In some depositional settings, it permitted the evolution of anoxia/dysoxia to euxinia (sulphidic waters). The latter is recorded by the presence of anoxygenic phototrophs and involved denitrification, anaerobic oxidation of methane and sulphate reduction. In order to better constrain different OAE palaeoenvironments, models are suggested here that show the evolution from main microbial communities thriving through the water column to bacterial and more complex microbial mats. Therefore, microbial processes have a key role in OM production and metabolization. They directly influence the position of the chemocline. Detailed study of the OM preserved in black shales will be key to understanding OAEs.     

Intracellular and extracellular mineralization of a microbial community in the Edmond deep-sea vent field environment

Microbial biomineralization in submarine hydrothermal environments provides an insight into the formation of vent microfossils and the interactions between microbes, elements and minerals throughout the geological record. Here, we investigate microbial biomineralization of a deep-sea vent community in the Edmond vent field and provide ultrastructural evidence for the formation of microfossils and biogenic iron-rich minerals related to Archaea and Bacteria. Environmental scanning electron microscopy (ESEM) analysis shows that filamentous and spiral microbes are encrusted by a non-crystalline silica matrix and minor amounts of iron oxides. Examination by transmission electron microscopy (TEM) reveals acicular iron-rich particles and aggregates that occur either intracellularly or extracellularly. A culture-independent molecular phylogenetic analysis demonstrates a diverse range of Bacteria and Archaea, the majority of which are related to sulfur metabolism in the microbial mats. Both Archaea and Bacteria have undergone silicification, in a similar manner to microorganisms in some terrestrial hot springs and indicating that silicification may be driven by silica supersaturation and polymerization. Formation mechanisms of intracellular and extracellular iron oxides associated with microbes are discussed. These results enhance our understanding of microbial mineralization in extreme environments, which may be widespread in the Earth's modern and ancient hydrothermal vent fields.     

Rapid in situ silicification of microbes at Loburu hot springs, Lake Bogoria, Kenya Rift Valley

Microbial mats, located along the margins of hot-spring pools and outflow channels at Lake Bogoria, Kenya, are commonly silicified forming friable laminated crusts. Columnar microstromatolites composed of silica and calcite are also forming at several springs in sites of oscillating water level or spray. Silicification of the microbes involves impregnation of organic tissue by very fine amorphous silica particles and encrustation by small (< 2 μm) silica spheroids. Rapid silicification of the microbes, which may begin while some are still alive, can preserve sheaths and in some examples, the filaments, capsules and cells. Although this provides evidence of their general morphology, the biological features that are required for taxonomic identifications are commonly poorly preserved.
The silica precipitation results mainly from evaporative concentration and rapid cooling of spring waters that have been drawn upward through the mats and microstromatolites by capillary processes. Almost all the silica at the Loburu springs nucleates on microbial substrates. This affinity of silica for functional groups on microbial surfaces contributes to the rapid silicification of the microbes and their preservation in modern and ancient cherts.     

The Permian–Triassic mass extinction: Ostracods (Crustacea) and microbialites

The end-Permian mass extinction (EPE), about 252 Myr ago, eradicated more than 90% of marine species. Following this event, microbial formations colonised the space left vacant after extinction of skeletonised metazoans. These post-extinction microbialites dominated shallow marine environments and were usually considered as devoid of associated fauna. Recently, several fossil groups were discovered together with these deposits and allow discussing the palaeoenvironmental conditions following the EPE. At the very base of the Triassic, abundant Ostracods (Crustacea) are systematically present, only in association with microbialites. Bacterial communities building the microbial mats should have served as an unlimited food supply. Photosynthetic cyanobacteria may also have locally provided oxygen to the supposedly anoxic environment: microbialites would have been refuges in the immediate aftermath of the EPE. Ostracods temporarily disappear together with microbialites during the Griesbachian.     

塔里木盆地苏盖特布拉克地区下寒武统肖尔布拉克组碳酸盐岩微生物建造特征*

塔里木盆地苏盖特布拉克地区下寒武统肖尔布拉克组发育3种类型碳酸盐岩微生物（蓝细菌）建造,即下部微生物丘状和层状建造、中上部微生物礁和顶部叠层石建造。微生物丘状和层状建造的特点是似层状孔洞和纹层结构发育,形成于潮下高能带,与微生物席粘结有关,分布相对稳定。微生物礁是由枝状或丛状微生物骨架生长和微生物席粘结两种方式形成,分布较广,可分为两大期：第1大期发育在海退背景下,呈宏观块状建造特征;第2大期则发育在较大的海侵背景下,呈现两期点礁特征。叠层石建造发育在更大范围的海侵背景下,超覆于点状建造之上,要求的水动力条件相对较强,由微生物粘结作用形成,其中叠层石和核形石是其重要标志,仅分布在研究区北部的苏Ⅱ、苏Ⅲ和苏Ⅳ剖面近顶部。     

Biomineralization of As(V)-hydrous ferric oxyhydroxide in microbial mats of an acid-sulfate-chloride geothermal spring, Yellowstone National Park

Acid-sulfate-chloride (pH∼3) geothermal springs in Yellowstone National Park (YNP) often contain Fe(II), As(III), and S(-II) at discharge, providing several electron donors for chemolithotrophic metabolism. The microbial populations inhabiting these environments are inextricably linked with geochemical processes controlling the behavior of As and Fe. Consequently, the objectives of the current study were to (i) characterize Fe-rich microbial mats of an ASC thermal spring, (ii) evaluate the composition and structure of As-rich hydrous ferric oxides (HFO) associated with these mats, and (iii) identify microorganisms that are potentially responsible for mat formation via the oxidation of Fe(II) and or As(III). Aqueous and solid phase mat samples obtained from a spring in Norris Basin, YNP (YNP Thermal Inventory NHSP35) were analyzed using a complement of chemical, microscopic and spectroscopic techniques. In addition, molecular analysis (16S rDNA) was used to identify potentially dominant microbial populations within different mat locations. The biomineralization of As-rich HFO occurs in the presence of nearly equimolar aqueous As(III) and As(V) (∼12 μM), and ∼ 48 μM Fe(II), forming sheaths external to microbial cell walls. These solid phases were found to be poorly ordered nanocrystalline HFO containing mole ratios of As(V):Fe(III) of 0.62 ± 0.02. The bonding environment of As(V) and Fe(III) is consistent with adsorption of arsenate on edge and corner positions of Fe(III)-OH octahedra. Numerous archaeal and bacterial sequences were identified (with no closely related cultured relatives), along with several 16S sequences that are closely related to Acidimicrobium, Thiomonas, Metallosphaera and Marinithermus isolates. Several of these cultured relatives have been implicated in Fe(II) and or As(III) oxidation in other low pH, high Fe, and high As environments (e.g. acid-mine drainage). The unique composition and morphologies of the biomineralized phases may be useful as modern-day analogs for identifying microbial life in past Fe-As rich environments.     

Holocene stromatolites and microbial laminites associated with lenticular gypsum in a marine-dominated environment, Ras El Shetan area, Gulf of Aqaba, Egypt

Field and petrographic investigations of Holocene evaporites in the Ras El Shetan area, Gulf of Aqaba, Egypt, indicate the presence of microbial mats either in the form of laminites or stromatolites. The morphology of microbial mats and gypsum crystal size characterize the following lithofacies: (1) slump-stromatolitic gypsarenite, (2) random gypsrudite, (3) stromatolitic gypsarenite, and (4) microbially laminated gypsrudite. These evaporite lithofacies are formed above pre-evaporitic mudstones rich in disrupted cyanobacterial filaments, burrows and cerithid gastropods. The morphology of the gypsum crystals is mainly lenticular, indicating enrichment of dissolved organic compounds in the depositional environment. The difference in size of the lenticular gypsum crystals is related to minor changes in salinity and temperature of the parent brine. Fluid inclusions in gypsum crystals indicate their formation at low temperature (<50°C) in a seawater sourced brine that evaporated to gypsum saturation or higher. The brine salinities range from 10·62 to 12·99 equivalent wt% NaCl, and the brine densities range from 1·08 to 1·11 g/cm³. The change in morphology of the microbial mats (stromatolites and laminites) is related mainly to changes in water depth, from a very shallow salina to a coastal sabkha. Lenticular gypsum nucleated displacively in the microbial mats from saline, oxygenated groundwater that seeped from the sea through a barrier.     

Hydrogen-isotopic variability in fatty acids from Yellowstone National Park hot spring microbial communities

We report the abundances and hydrogen-isotopic compositions (D/H ratios) of fatty acids extracted from hot-spring microbial mats in Yellowstone National Park. The terrestrial hydrothermal environment provides a useful system for studying D/H fractionations because the numerous microbial communities in and around the springs are visually distinct, separable, and less complex than those in many other aquatic environments. D/H fractionations between lipids and water ranged from −374‰ to +41‰ and showed systematic variations between different types of microbial communities. Lipids produced by chemoautotrophic hyperthermophilic bacteria, such as icosenoic acid (20:1), generally exhibited the largest and most variable fractionations from water (−374‰ to −165‰). This was in contrast to lipids characteristic of heterotrophs, such as branched, odd chain-length fatty acids, which had the smallest fractionations (−163‰ to +41‰). Mats dominated by photoautotrophs exhibited intermediate fractionations similar in magnitude to those expressed by higher plants. These data support the hypothesis that variations in lipid D/H are strongly influenced by central metabolic pathways. Shifts in the isotopic compositions of individual fatty acids across known ecological boundaries show that the isotopic signature of specific metabolisms can be recognized in modern environmental samples, and potentially recorded in ancient ones. Considering all sampled springs, the total range in D/H ratios is similar to that observed in marine sediments, suggesting that the trends observed here are not exclusive to the hydrothermal environment.     

Spatial pattern of localized disturbance along a Southeastern salt marsh tidal creek

Geomorphology may be an important predictor of vegetation pattern in systems where suceptibility to disturbance is unevenly distributed across the landscape. Salt marsh communities exhibit spatial pattern in vegetation at a variety of spatial scales. In coastal Georgia, the low marsh is a virtual monoculture ofSpartina alterniflora interspersed with patches of species that are more typical of the high marsh. These localized disturbances are most likely created by wrack mats, mats of dead vegetation which can compact and smother underlying vegetation creating bare patches for colonization by high marsh species. We investigated the spatial pattern of disturbed patches along a 2 km section of Dean Creek, a tidal creek at the southwestern end of Sapelo Island, Georgia, U.S. We used a discriminant model to explore the relationship between tidal creek morphology (e.g., the presence of drainage channels and creek bends) and the spatial distribution of disturbed patches. The model predicted vegetation pattern along the creek with relatively high accuracy (>70%). Areas where water movement is slowed or multidirectional (e.g., along creek bends and near drainage channels) were most susceptible to disturbance. Our findings suggest an important functional linkage between geomorphology and vegetation pattern in salt marsh communities.     

Microbial Nitrogen Cycling in Estuaries: From Genes to Ecosystem Processes

Nitrogen (N) is one of the primary nutrients required to build biomass and is therefore in high demand in aquatic ecosystems. Estuaries, however, are frequently inundated with high concentrations of anthropogenic nitrogen, which can lead to substantially degraded water quality. Understanding drivers of biogeochemical N cycling rates and the microbial communities responsible for these processes is critical for understanding how estuaries are responding to human development. Estuaries are notoriously complex ecosystems: not only do individual estuaries by definition encompass gradients of salinity and other changing environmental conditions, but differences in physical parameters (e.g., bathymetry, hydrodynamics, tidal flushing) lead to a tremendous amount of variability in estuarine processes between ecosystems, as well. Here, we review the current knowledge of N cycling processes in estuaries carried out by bacteria and archaea, including both biogeochemical rate measurements and molecular characterizations of N cycling microbial communities. Particular attention is focused on identifying key environmental factors associated with distinct biogeochemical or microbial regimes across numerous estuaries. Additionally, we describe novel metabolisms or organisms that have recently been discovered but have not yet been fully explored in estuaries to date. While the majority of research has been conducted in the benthos, we also describe data from estuarine water columns. Understanding both the common patterns and the differences between estuaries has important implications for how these critical ecosystems respond to changing environmental conditions.