Pathways of organic matter through food webs of diverse habitats in the regulated Nakdong River estuary (Korea)

The benthic macroinvertebrates of the Nakdong River estuary were sampled at three different habitats: two salt marsh (Scirpus triqueter and Phragmites australis) beds and a bare intertidal flat. Fishes were sampled in the main channel. The trophic importance of marsh vascular plants, microphytobenthos, and riverine and channel particulate organic matter to macroinvertebrate and fish production was studied using stable carbon and nitrogen isotope tracers. There was a dramatic change in coverage of macrophytes (salt marshes and seagrass) after the construction of an estuarine barrage in 1987 in the Nakdong River estuary, with the S. triqueter bed increasing, the P. australis bed decreasing, and Zostera marina habitats being nearly lost. Although the invertebrate δ¹³C were within a narrower range than those of the primary producers, the values varied considerably among consumers in these habitats. However, the isotope signatures of consumers showed similarities among different habitats. Cluster analysis based on their isotopic similarity suggested that the isotope variability among species was related more to functional feeding groups than to habitats or taxonomic groups. While δ¹³C values of suspension feeders were close to that of the channel POM (mainly phytoplankton), other benthic feeders and predators had δ¹³C similar to that of microphytobenthos. Isotopic mixing model estimates suggest that algal sources, including microphytobenthos and phytoplankton, play an important role in supporting the benthic food web. Despite the huge productivity of emergent salt marshes, the contribution of the marsh-derived organic matter to the estuarine food webs appears to be limited to some nutrition for some invertebrates just within marsh habitats, with little on the bare intertidal flats or in the channel fish communities. Isotope signatures of the channel fishes also confirm that algal sources are important in supporting fish nutrition. Our findings suggest that benthic and pelagic microalgae made a large contribution to consumer diets, while marsh plants may not have a large role in supporting food webs in this estuarine system.     

Carbon sources supporting a diverse fish community in a tropical coastal ecosystem (Gazi Bay,Kenya)

Interlinked mangrove–seagrass ecosystems are characteristic features of many tropical coastal areas, where they act as feeding and nursery grounds for a variety of fishes and invertebrates. The autotrophic carbon sources supporting fisheries in Gazi bay (Kenya) were studied in three sites, two located in the tidal creeks flowing through extensive mangrove forests, another site located in the subtidal seagrass meadows, approximately 2.5 km away from the forest. Carbon and nitrogen stable isotope composition of 42 fish species, 2 crustacean species and a range of potential primary food sources (e.g., mangroves, seagrasses and epiphytes, macroalgae) were analysed. There was considerable overlap in the δ¹³C signatures between fish (−16.1 ± 2.1‰), seagrasses (−15.1 ± 3.0‰), seagrass epiphytes (−13.6 ± 3.3‰), and macroalgae (−20.4 ± 3.1‰). Nevertheless, the signatures for most primary producers were sufficiently distinct to indicate that the dominant carbon sources for fish were mainly derived from the seagrass and their associated epiphytic community, and possibly macroalgae. Mangrove-derived organic matter contributes only marginally to the overall fish food web. Carbon supporting these fish communities was derived directly through grazing by herbivorous and some omnivorous fishes, or indirectly through the benthic food web. Fishes from the mangrove creeks had distinctly lower δ¹³C signatures (−16.8 ± 2.0‰) compared to those collected in the adjacent seagrass beds (−14.7 ± 1.7‰). This indicated that these habitats were used as distinct sheltering and feeding zones for the fishes collected, with minimal degree of exchange within the fish communities despite their regular movement pattern.     

Food webs in forest and pasture streams in the Waikato region,New Zealand: A study based on analyses of stable isotopes of carbon and nitrogen,and fish gut contents

Abstract

Stable isotopes of carbon (C) and nitrogen (N) were studied in 11 stream communities in the Waikato region of New Zealand. From comparisons of mean δ¹³C and δ¹⁵N values, food webs in the shaded, forest streams were clearly based on allochthonous material (conditioned leaf litter and terrestrial invertebrates). Autotrophs in forest streams were not a significant C source for the food webs. However, the C source of food webs in the unshaded pasture streams appeared to be a mixture of allochthonous and autochthonous material. Conditioned leaf litter appeared to contribute to the pasture stream food webs, and the δ¹³C and δ¹⁵N of some samples of epilithic diatoms indicated their consumption by invertebrates in pasture streams. Fish ate a wide range of aquatic invertebrates; longfinned eels (Anguilla dieffenbachii) and banded kokopu (Galaxias fasciatus) also had a large proportion of terrestrial invertebrates in their diet. Filamentous green algae were found only at pasture sites, where they were sometimes abundant. The wide range of δ¹³C values of filamentous green algae (‐18.8 to ‐29.7‰) complicated understanding of their role in the stream food webs. The δ¹³C values of Cladophora were related to water velocity, with more ¹³C‐enriched values in pools than in runs (‐23.2‰ in pools, mean velocity 0.12 m s^?1; ‐28.1‰ in runs, mean velocity 0.24 m s^?1). Crayfish and the gastropod mollusc Potamopyrgus appeared to be the only invertebrates to eat filamentous green algae.     

Incorporation of terrestrial wetland material into aquatic food webs in a tropical estuarine wetland

Carbon and nitrogen stable isotope composition of a range of organisms collected from two intermittently connected floodplain pools in the Ross River estuary were analysed to assess the extent to which carbon fixed by terrestrial wetland producers is incorporated into adjacent aquatic food webs. The two pools differed in surrounding vegetation with one surrounded by mangroves and the other by the salt couch Sporobolus virginicus. At both pools, animals showed differences in δ¹³C, indicating differences in sources of carbon. Since δ¹³C values of C₃ mangroves (−29.7 to −26.3‰) were very different from those of the C₄ salt couch (−16.3 to −15.4‰), it was possible to determine the importance of terrestrial wetland producers by comparing isotope values of consumers between sites, in a species by species approach. Most animal species collected showed lower δ¹³C at the mangrove pool than at the Sporobolus pool, which indicates a greater incorporation of mangrove carbon at the mangrove pool. However, the animals’ isotopic shifts were also similar to that shown by epiphytes, and hence the differences in animal δ¹³C could also be a result of a dependence on these producers. The IsoSource model was useful to clarify this question, indicating that mangrove and salt marsh material was a crucial contributor to the diet of several fish and invertebrate species at both sites, indicating that carbon of terrestrial origin is incorporated in the estuarine food web.     

基于碳氮稳定同位素技术的小清河口邻近海域底栖食物网结构研究

为了掌握小清河口邻近海域底栖食物网结构特征,于2020年10月在小清河口邻近海域采集沉积物有机质、悬浮颗粒有机物、浮游动物和浮游植物4种潜在食源及35种生物样本,应用碳氮稳定同位素技术以及贝叶斯混合模型(MixSIAR)分析了小清河口邻近海域底栖食物网结构和营养关系.结果显示,潜在食源的δ13C值范围为-25.56‰～...     

环境饵料丰度的季节变化对筼筜湖3种大型底栖动物食性的影响——来自稳定同位素的证据

测定了不同时期筼筜湖3种大型底栖动物(沙筛贝Mytilopsis sallei、日本大螯蜚Grandidierella japonica和腺带刺沙蚕Neanthes japonica)及其潜在食源的稳定同位素组成(δ13C和δ15 N),研究环境饵料丰度的季节变化对筼筜湖3种大型底栖动物食性的影响。结果显示,筼筜湖悬浮颗粒有机物(Particulate organic matter∶POM)的δ13C和δ15 N存在明显的季节变化。3月,受到输入筼筜湖的西海域海水大量陆源有机碎屑以及湖区周围的生活污水以及餐饮业输入的影响,筼筜湖POM的δ13 C和δ15 N明显贫化;而在9月,POM中δ13 C和δ15 N明显富集的内源性浮游植物的贡献增加。沙筛贝是典型的底栖滤食者,主要以POM为食,但它比POM富集的δ13 C值(3月和9月二者之间的Δδ13 C分别为2.9‰和1.6‰)表明它还摄入其他δ13 C相对富集的食物来源:石莼来源的有机碎屑可能是3月份沙筛贝δ13C富集的原因,而9月份则是由于再悬浮的底栖微藻对沙筛贝食源的贡献引起的。食碎屑的腺带刺沙蚕和日本大螯蜚在3月以石莼及其表面的附生生物为食,而9月份底栖微藻和浮游植物来源的POM是它们食源的主要贡献者。本研究的结果显示,筼筜湖3种大型底栖动物的δ15 N都出现明显的季节变化(Δδ15 N介于2.2‰~4.3‰),这是由于它们食源稳定同位素的季节性波动及其食性的季节变化引起的,而消费者食性的季节性变化则受到不同时期环境食物可利用性的影响。     

Distinctive stable isotope ratios in important zooplankton species in relation to estuarine salinity gradients: Potential tracer of fish migration

To assess the potential of stable isotope ratios as an indicator of fish migration within estuaries, stable isotope ratios in important zooplankton species were analyzed in relation to estuarine salinity gradients. Gut contents from migratory juveniles of the euryhaline marine fish Lateolabrax japonicus were examined along the Chikugo River estuary of the Ariake Sea, which has the most developed estuarine turbidity maximum (ETM) in Japan. Early juveniles in March and April preyed primarily on two copepod species; Sinocalanus sinensis at lower salinities and Acartia omorii at higher salinities. Late juveniles (standard length > 40 mm) at lower salinities preyed exclusively on the mysid Acanthomysis longirostris until July and complementarily on the decapod Acetes japonicus in August. These prey species were collected along the estuary during the spring–summer seasons of 2003 and 2004, and their carbon and nitrogen stable isotope ratios (δ¹³C and δ¹⁵N) were evaluated. The δ¹³C values of prey species were distinct from each other and were primarily depleted within and in close proximity to the ETM (salinity < 10); S. sinensis (−26.6‰) < Acanthomysis longirostris (−23.3‰) < Acartia omorii (−21.1‰) < Acetes japonicus (−18.5‰). The overall gradient of δ¹³C with salinity occurred for all prey species and showed minor temporal fluctuations, while it was not directly influenced by the δ¹³C values in particulate organic matter along the estuary. In contrast to δ¹³C, the δ¹⁵N values of prey species did not exhibit any clear relationship with salinity. The present study demonstrated that δ¹³C has the potential for application as a tracer of fish migration into lower salinity areas including the ETM.     

Estuarine resources use by juvenile Flagfin mojarra (Eucinostomus melanopterus) in an inverse tropical estuary (Sine Saloum,Senegal)

The Flagfin mojarra, Eucinostomus melanopterus, is a marine spawner whose young individuals are common in the Sine Saloum inverse estuary (Senegal). The species offers the opportunity to study both the use of the estuarine nursery resources and the impact of the particular environment of the inverse estuary on these resources. This will lead to a better understanding of the functioning of the nursery. We investigated the resources used by juvenile Flagfin mojarra by coupling stomach contents and stable isotopes methods.     

Food sources of the pearl oyster in coastal ecosystems of Japan: Evidence from diet and stable isotope analysis

We estimated the composition of two food sources for the cultured pearl oyster Pinctada fucata martensii using stable isotopes and stomach content analysis in the coastal areas of the Uwa Sea, Japan. The δ¹³C values of oysters (−17.5 to −16.8‰) were intermediate between that of particulate organic matter (POM, −20.2 to −19.1‰) and attached microalgae on pearl cages (−13.0‰). An isotope mixing model suggested that oysters were consuming 78% POM (mainly phytoplankton) and 22% attached microalgae. The attached microalgal composition of the stomach content showed a strong resemblance to the composition of that estimated through the isotope mixing model, suggesting preferential utilization of specific components is unlikely in this species. These results indicate that P. fucata martensii feed on a mixture of phytoplankton and attached microalgae, and that the attached microalgae on pearl cages can serve as an important additional food source.     

Spatial versus temporal patterns in fish assemblages of a tropical estuarine coastal lake: The Ebrié Lagoon (Ivory Coast)

The fish assemblages of the Ebrié lagoon (Ivory Coast) were sampled by experimental fishing over the entire lagoon using a purse seine net. The sampling was conducted in the two main hydroclimatic seasons for this ecosystem, i.e. in the dry season (March–April) and in the wet season (August–September). The results obtained showed a fish assemblage organized around a consistently occurring group of twenty species. When analysed in terms of ecological categories, the seasonal influence led to a cycle in the assemblages from freshwater to marine around this permanent species pool, with a seasonal renewal of the assemblage. At the scale of the lagoon, there were variations in the composition of the assemblages that clearly distinguished the western part from the eastern one. The limit was situated at the Vridi canal, a wide artificial channel permanently connecting the lagoon to the sea. To the west, the assemblage was characterised by a strong spatial uniformity and low seasonal variability. To the east, the assemblage formed two different entities; one assemblage with pronounced freshwater affinities occurring in a side arm and the other assemblage with great seasonal variability under the alternating influence of seawater in the dry season and freshwater in the wet season. This part of the lagoon functioned somewhat like a typical estuary.     

Trophic importance of diatoms in an intertidal Zostera noltii seagrass bed: Evidence from stable isotope and fatty acid analyses

A current predominant paradigm emphasizes the role of epiphytic algae for invertebrates in most seagrass food webs. However, in some intertidal Zostera noltii beds, epiphyte biomass is very low compared to microphytobenthos and seagrass biomasses. We assessed the role of microphytobenthos in a temperate intertidal Z. noltii bed by combining stable isotope and fatty acid (FA) analyses on primary producers, composite sources — suspended particulate organic matter (SPOM) and sediment surface organic matter (SSOM) — and the main macrofaunal consumers. Z. noltii showed high δ¹³C (−9.9‰) and high 18:2(n-6) and 18:3(n-3) contents. Microphytobenthos was slightly more ¹³C-depleted (−15.4‰) and had high levels of diatom markers: 14:0, 16:1(n-7)c, 20:5(n-3). Low mean δ¹³C (−22.0‰) and large amounts of diatom and bacteria (18:1(n-7)c) markers indicated that SPOM was mainly composed of a mixture of fresh and decayed pelagic diatoms. Higher mean δ¹³C (−17.9‰) and high amounts of diatom FAs were found in SSOM, showing that microphytobenthic diatoms dominate. Very low percentages of 18:2(n-6) and 18:3(n-3) in consumers indicated a low contribution of Z. noltii material to their diets. Grazers, deposit and suspension-deposit feeders had δ¹³C close to microphytobenthos and high levels of diatom FAs, confirming that microphytobenthos represented the main part of their diet. Lower δ¹³C and higher amounts of flagellate FAs – 22:6(n-3) and 16:4(n-3) – in suspension feeders indicated that their diet resulted from a mixture of SPOM and microphytobenthos. These results demonstrate that invertebrates do not consume high amounts of seagrass and highlight the main role of benthic diatoms in this intertidal seagrass bed.     

长江口海域悬浮颗粒有机物的稳定氮同位素分布及其生物地球化学意义

对2006年2,5,8,11月份长江口海域表层水体中的悬浮颗粒物(SPM)进行稳定氮同位素分析,根据不同季节、不同区域内其1δ5N值的变化研究水体中氮的迁移、转化等生物地球化学过程,揭示其环境行为,从而对该海域的氮循环机制进行探索。研究发现:该海域悬浮颗粒有机物的稳定氮同位素组成(1δ5Np)分布范围较宽,在0.6‰~8.2‰之间,具有明显的时空分布特点,反映了不同程度的陆源输入和氮的生物地球化学过程的影响。口门内,表层水体中1δ5Np的变化主要受长江径流的陆源输入影响,生物地球化学作用影响较弱;最大浑浊带,水体中的悬浮颗粒有机氮受微生物的降解活动影响明显,各季节均存在不同程度的颗粒物分解作用;外海区,陆源输入减弱,悬浮颗粒物的δ15Np值主要受微藻的同化吸收作用以及一定程度的颗粒物分解作用影响。     

基于稳定性同位素的普里兹湾南极大磷虾不同发育阶段食性转变分析

As one of the most common and dominant species in the Southern Ocean, Antarctic krill(Euphausia superba)play a significant role in food web structure and the process of energy flow. The diet of Antarctic krill in the Prydz Bay during austral summer of 2012/2013 was investigated and the ontogenetic shift in krill diet was evaluated using the stable isotope method. The nitrogen stable isotope values(δ~(15) N) of adults((2.78±0.58)‰) were much higher than those of juveniles((1.69±0.70)‰), whereas the carbon stable isotope values(δ~(13) C) of adults(–(28.26±1.08)‰) were slightly lower than those of juveniles(–(27.48±1.35)‰). Particulate organic matter(POM)from 0, 25, and 50 m depth combined(0/25/50 m) represented phytoplankton food items. The results showed that phytoplankton food items in surface water and mesozooplankton were two essential food items for Antarctic krill in the Prydz Bay during summer. POM(0/25/50 m) contributes 56%–69% and 26%–34% to the diet of juvenile and adult krill, respectively, whereas mesozooplankton composes 13%–34% and 58%–71% of the diet of juvenile and adult krill, respectively. Thus, an ontogenetic diet shift from POM(0/25/50 m), which consists mainly of phytoplankton, to a higher trophic level diet containing mesozooplankton, was detected. The capacity for adults to consume more zooplankton food items may minimize their food competition with juveniles, which rely mostly on phytoplankton food items. This suggests "diet shift with ontogeny" which may somehow help krill keep their dietary energy budget balanced and well adapted to the Antarctic marine ecosystem as a dominant species.     

Riverine dominance of a nearshore marine demersal food web: evidence from stable isotope and C/N ratio analysis

The Thukela Bank, KwaZulu-Natal, supports a diverse ecosystem and South Africa’s only prawn fishery. Oceanographic studies suggest riverine input is not important for the biology of this system, whereas biological studies suggest the contrary, with prawn catches increasing with increased fluvial run-off. The aim of this study was to determine (i) the importance of riverine and marine organic matter for the Thukela Bank food web; and (ii) whether there are seasonal changes in the Thukela River stable isotope values, and, if so, whether these are reflected in the isotope values of demersal organisms. Estuarine organic matter, sediments and demersal organisms were collected from several sites across the bank in the wet and dry seasons of 2008, 2009 and 2010. Marine particulate organic matter was also collected in 2010 and analysed for δ13C and δ15N, as well as C/N ratios. There were strong seasonal changes in isotopic values of organic matter and fauna, especially faunal δ13C. There was an apparent time-lag in organisms assimilating riverine organic matter isotopic values, with the isotopic signature of demersal organisms reflecting that of riverine organic matter from the previous season, which is likely the result of tissue turnover time. In 2010, Thukela Bank sediment organic matter was of riverine origin and this maintained the demersal food web. We conclude that Thukela River organic matter is an important input to the food web of the Thukela Bank, indicating that any future damming of the catchment area could have serious consequences for this ecosystem.     

Analyses of stomach contents and stable isotopes reveal food sources of estuarine detritivorous fish in tropical/subtropical Taiwan

Detritivorous fish generally refers to fish that primarily ingest unidentified organic detritus. We analyzed stomach contents in combination with stable isotopes to trace and compare the food sources of the large-scale mullet Liza macrolepis and other detritivorous fish species in subtropical mangrove creeks and a tropical lagoon in Taiwan. The volume of organic detritus always contributed >50% of the stomach content of L. macrolepis in the two habitats. However, consumed items were distinct between the two habitats and corresponded to the types in which they reside. The consumed items in the lagoon were more diverse than those observed in the mangroves. In the mangroves, the diet composition of L. macrolepis was primarily determined by season, not by body size. In the lagoon, there were no clear seasonal or size-dependent grouping patterns for the diet composition. There were significant seasonal and spatial variations in δ¹³C and δ¹⁵N values of potential food sources and L. macrolepis. However, neither δ¹³C nor δ¹⁵N values of L. macrolepis were correlated with fish body size. Joint analyses of stomach contents and stable isotopes indicated that benthic microalgae on sediments were the most important assimilated food in both seasons for the dominant detritivorous fish in the mangroves, whereas a greater reliance on microalgal and macroalgal periphyton on oyster-culture pens was observed in the lagoon. Mangrove and marsh plants and phytoplankton, which are mostly locally produced within each habitat, were of minor importance in the assimilated food.     

Food partitioning of leaf-eating mangrove crabs (Sesarminae): Experimental and stable isotope (C and N) evidence

The feasibility of mangrove leaves as a full diet for sesarmid crabs has been questioned for decades. Since these leaves are nitrogen-poor, sesarmids probably obtain nitrogen from other sources to sustain growth. The aim of this study was to assess the food partitioning of the sesarmid species Neoepisesarma versicolor with emphasis on nitrogen allocation. The preference for animal tissue when crabs were pre-fed diets of different nitrogen content was determined in the laboratory. Furthermore, the possible in situ diet composition of N. versicolor was established from carbon and nitrogen stable isotope signature (δ¹³C and δ¹⁵N) of freshly caught individuals and their potential food sources, using a concentration-dependent mixing model. N. versicolor showed significantly higher feeding preferences for fish meat when pre-fed leaf material without than with access to meat, indicating that this crab species can meet its nitrogen demand by ingesting animal tissue. The stable isotope mixing model based on in situ materials suggests that the diet of N. versicolor consists of ∼60% leaves in terms of biomass, leaving ∼40% for other sources such as animal tissue and benthic microorganisms. The biomass contribution from animal tissues, in form of e.g. other crustaceans and fish carcasses, was found to account for ∼15%. Despite the relative low biomass fraction, animal food sources may contribute with up to half of the nitrogen in the diet of N. versicolor. The quantity of ingested sediment most likely exceeds that of animal tissues. However, due to the low concentration of assimilable microalgae and other microorganism, we propose that sediment associated sources are less important as a nitrogen source for N. versicolor than hitherto presumed.     

Contrasting chemical and isotopic compositions of organic matter in Changjiang (Yangtze River) estuarine and East China Sea shelf sediments

To examine the source and preservation of organic matter in the shelf sediments of the East China Sea (ECS), we measured bulk C/N and isotopes, organic biomarkers (n-alkanes and fatty acids) and compound-specific (fatty acids) stable carbon isotope ratios in three sediment cores collected from two sites near the Changjiang Estuary and one in the ECS shelf. Contrasting chemical and isotopic compositions of organic matter were observed between the estuarine and shelf sediments. The concentrations of total n-alkanes and fatty acids in the shelf surface sediments (0–2 cm) were 5–10 times higher than those in estuarine surface sediments but they all decreased rapidly to comparable levels below the surface layer. The compositions of n-alkanes in the estuarine sediments were dominated by C₂₆-C₃₃ long-chain n-alkanes with a strong odd-to-even carbon number predominance. In contrast, the composition of n-alkanes in the shelf sediment was dominated by nC₁₅ to nC₂₂ compounds. Long-chain (>C₂₀) fatty acids (terrestrial biomarkers) accounted for a significantly higher fraction in the estuarine sediments compared to that in the shelf sediment, while short-chain (<C₂₀) saturated and unsaturated fatty acids were more abundant in the shelf surface sediments than in the estuarine sediments. Stable carbon isotopic ratios of individual fatty acids showed a general positive shift from estuarine to shelf sediments, consistent with the variations in bulk δ ¹³C_TOCTOC. These contrasts between the estuarine and shelf sediments indicate that terrestrial organic matter was mainly deposited within the Changjiang Estuary and inner shelf of ECS. Post-depositional diagenetic processes in the surface sediments rapidly altered the chemical compositions and control the preservation of organic matter in the region.     

Sources and transfer of organic matter in food webs of a Mediterranean coastal environment: Evidence for spatial variability

The spatial variability in the food web structure of a Mediterranean semi-enclosed coastal environment (Stagnone di Marsala, Italy) was investigated using stable carbon and nitrogen isotopes. Organic matter sources and consumers were sampled in two locations with different environmental features (e.g. hydrodynamic regime, open-sea influence, vegetal coverage). Overall more ¹³C-enriched and ¹⁵N-depleted values were found in the central location than in the southern for organic matter sources and consumers. Pelagic consumers (zooplankton and juveniles of transient fish) showed slight spatial differences and in both locations seemed to depend on phytoplankton as the ultimate energy source. In contrast, benthic consumers (epifauna and resident fish) exhibited remarkable differences between locations. Spatial differences in organic matter sources were smaller than in benthic consumers and thus consumers presumably exploited different ultimate organic matter sources in the two locations. Sedimentary organic matter and epiphytes appeared to be the main primary producers transferred within the food web in both locations, and seagrasses seemed to play a non-negligible trophic role in the central location. The results of this paper corroborate the finding food webs are characterised by high spatial variability even on a small spatial scale and environmental heterogeneity more than primary production that seems to influence the trophic role of autotrophs.     

Seasonal dynamics of ciliated protozoa and their potential food in an eutrophic estuary (Bay of Biscay)

Ciliate assemblages, together with phytoplankton and heterotrophic nanoflagellates (HNF) as their potential food, have been surveyed monthly along the salinity gradient of the Nervión River estuary from March 2000 to March 2002. A total of 135 taxa of ciliate have been identified corresponding to 20 orders. Scuticociliates, naked choreotrichs and oligotrichs were the most abundant groups, distributed throughout a broad range of salinity. In addition to these groups, which were the dominant taxa in the middle estuary, tintinnids were characteristic of the ciliate assemblages of the outer estuary whereas in the innermost part naked choreotrichs and oligotrichs decreased in number, being substituted by sessilids, hymenostomatids, peniculids and cyrtophorids. Total ciliate concentrations were among the highest reported in the literature for other estuaries and coastal waters, frequently reaching 10⁵ cells l⁻¹. Meanwhile, tintinnid concentrations were comparable with those of other estuarine and coastal waters. Based on a principal component analysis (PCA) three main groups were delineated, with ciliates and their potential food sources as variables. One was that constituted by freshwater ciliate such as sessilids, hymenostomatids, cyrtophorids and pleurostomatids, which appear in low numbers in the innermost part, mainly in winter. Another group contained diatoms, chlorophytes, flagellates, euplotids and scuticociliates, all of them broadly distributed along the estuary and reaching their maximum density in late spring–summer. The third group was made up of taxa mainly appearing at the seaward end such as dinoflagellates, cyanobacteria, haptorids, tintinnids, naked choreotrichs and oligotrichs, which reached the highest densities in summer and early autumn. Ciliates do not seem to be food limited in the Nervión River estuary or much controlled by metazoan grazing.