Contrasting effects of managed opening regimes on water quality in two intermittently closed and open coastal lakes

Intermittently closed and open lakes and lagoons (ICOLLs) are shallow barrier lakes which are intermittently connected to the sea and experience saline intrusions. Many ICOLLs are mechanically opened to prevent flooding of surrounding agricultural and urban land and to flush water of poor quality. In this study, the effects of modified opening regimes (frequency and duration of barrier openings and closures) on water quality and phytoplankton in two New Zealand ICOLLs were investigated over a number of opening/closure cycles. Water quality in Lake Ellesmere (Te Waihora) responded weakly to both opening and closing events, indicating that sea–ICOLL exchange did not markedly improve water quality. Conversely, water quality in Waituna Lagoon responded rapidly to barrier openings; water level decreased to near sea level within days of opening and subsequent seawater exchange resulted in rapid decreases in nitrate and chlorophyll a concentrations. The closure of Waituna Lagoon resulted in rapid rise in water level and a pulse of nitrate and phosphorus in the water column and phytoplankton chlorophyll a concentrations increased with increasing closed-period duration. Based on data on the underwater light climate and nutrient dynamics, phytoplankton in Lake Ellesmere was probably light-limited, whereas phytoplankton in Waituna Lagoon was rarely light-limited, and appeared to be predominately P-limited. The marked differences in responses of Lake Ellesmere and Waituna Lagoon to barrier openings and closures reflected differences in ICOLL water levels and morphological characteristics, which dictated the degree of tidal flushing when the barriers were open. The inter-ICOLL differences observed in this study indicate that unless the effects of ICOLL openings/closures on phytoplankton and nutrient dynamics are understood, changes to ICOLL opening regimes may have unintended consequences for the water quality and ecology of these systems.     

Oxygen penetration through invertebrate burrow walls in Korean tidal flat

Macrofaunal burrows increase the surface area of the sediment-water interface, which has a great impact on the metabolism of aerobic microbes and the oscillation of reduced metabolites within the sediment. Given the importance of macrofauna in surficial sediments, the aim of this study is to examine the effects of burrow architectures on dissolved oxygen diffusion rates in comparison with unburrowed sediment, and thereby to evaluate the theoretical assumption used for modeling solute distribution in the burrow system using field samples. Employing microsensors, horizontal oxygen profiles were measured on a micrometer scale around burrows of seven invertebrates in tidal flats of the west coast of Korea. Oxygen diffusion distance through the burrow walls of seven invertebrates showed spatio-temporal variation with a range of 0.6 to 2.9 mm. Two groups of burrows were identified based on their oxygen diffusive properties relative to unburrowed sediments: 1) oxygen penetration similar to that of ambient sediments and 2) clearly enhanced oxygen penetration. Differences in the diffusive properties of the burrow wall were related to the burrow depth and diameter, existence of mucus lining on the wall, sediment grain size, and tidal phases. Also inhabitant activity was an important factor affecting oxygen penetration, which is discussed in the paper. These results further demonstrate that simplified assumptions (i.e. burrow structures are viewed as direct biogeochemical extensions of the sediment-water interface) may not be exact representation of the nature.     

Oxygenation of intertidal estuarine sediments by benthic microalgal photosynthesis

A mathematical model was used to define the relative importance of microalgal photosynthesis and physical processes in the formation and maintenance of the oxygenated zone on the surface of intertidal estuarine sediments. Manometric measurements of sediment uptake and release showed that gross oxygen production usually exceeded aerobic community respiration. Polarometric microprobes measured vertical oxygen distributions in the sediment. Surface levels of oxygen ranged from 200% saturation in summer to 70% in winter. Profiles and flux measurements allowed calculation of sediment diffusion coefficients. Empirical evaluation of the terms of the model showed that epipelic diatom photosynthesis as a source of oxygen at low tide may exceed atmospheric diffusion by an order of magnitude. On a diurnal and seasonal basis, however, the diatoms may be less important to the oxygenation process than the physical forces of the tide.     

Live (stained) benthic foraminifera in the Whittard Canyon, Celtic margin (NE Atlantic)

Living (Rose Bengal stained) benthic foraminifera were investigated at 18 deep-sea stations sampled in the Whittard Canyon area (NE Atlantic). The stations were positioned along 4 bathymetric transects ranging from 300 to 3000 m depth: two along the main canyon axes (Western and Eastern branches) and two along adjacent open slopes (Western and Eastern slopes). The aim of this study was to assess changes of foraminiferal standing stock, composition and microhabitat in relation to the physico-chemical conditions prevailing at and below the sediment-water interface in various canyon and open-slope environments. Minimal oxygen penetration depths and maximal diffusive oxygen uptakes were recorded at upper canyon stations, suggesting a high mineralisation rate. This is confirmed by the high phytopigment concentrations measured in the sediment of the upper canyon axes. Foraminiferal abundance was positively correlated with diffusive oxygen uptake and phytopigment concentration in the sediment. This suggests a control of organic matter fluxes on the foraminiferal communities. Foraminiferal abundance was generally higher along the canyon axis compared to open-slope sites at comparable water depths. The species composition varied with water depth along all four transects, but was also different between canyon branches and adjacent slopes. The silty/sandy intercalations at many of the deeper canyon stations may have been rapidly deposited by fairly recent gravity flows. At station 51WB (3002 m), the faunal characteristics (strong dominance, shallow infaunal microhabitats) suggest that the foraminiferal community is in an early state of ecosystem colonisation after these recent sedimentation events, which would have supplied the important amounts of phytopigments.     

Nitrogen cycling in deep-sea sediments of the Porcupine Abyssal Plain, NE Atlantic

Rates of transformation, recycling and burial of nitrogen and their temporal and spatial variability were investigated in deep-sea sediments of the Porcupine Abyssal Plain (PAP), NE Atlantic during eight cruises from 1996 to 2000. Benthic fluxes of ammonium (NH₄) and nitrate (NO₃) were measured in situ using a benthic lander. Fluxes of dissolved organic nitrogen (DON) and denitrification rates were calculated from pore water profiles of DON and NO₃, respectively. Burial of nitrogen was calculated from down core profiles of nitrogen in the solid phase together with ¹⁴C-based sediment accumulation rates and dry bulk density. Average NH₄ and NO₃-effluxes were 7.4 ± 19 μmol m⁻² d⁻¹ (n = 7) and 52 ± 30 μmol m⁻² d⁻¹ (n = 14), respectively, during the period 1996–2000. During the same period, the DON-flux was 11 ± 5.6 μmol m⁻² d⁻¹ (n = 5) and the denitrification rate was 5.1 ± 3.0 μmol m⁻² d⁻¹ (n = 22). Temporal and spatial variations were only found in the benthic NO₃ fluxes. The average burial rate was 4.6 ± 0.9 μmol m⁻² d⁻¹. On average over the sampling period, the recycling efficiency of the PON input to the sediment was 94% and the burial efficiency hence 6%. The DON flux constituted 14% of the nitrogen recycled, and it was of similar magnitude as the sum of burial and denitrification. By assuming the PAP is representative of all deep-sea areas, rates of denitrification, burial and DON efflux were extrapolated to the total area of the deep-sea floor (>2000 m) and integrated values of denitrification and burial of 8 ± 5 and 7 ± 1 Tg N year⁻¹, respectively, were obtained. This value of total deep-sea sediment denitrification corresponds to 3–12% of the global ocean benthic denitrification. Burial in deep-sea sediments makes up at least 25% of the global ocean nitrogen burial. The integrated DON flux from the deep-sea floor is comparable in magnitude to a reported global riverine input of DON suggesting that deep-sea sediments constitute an important source of DON to the world ocean.     

Benthic denitrification and nitrogen cycling at the slope and rise of the N.W. European Continental Margin (Goban Spur)

The rate of benthic denitrification in slope and rise sediments of a transect across the N.W. European Continental Margin (Goban Spur) was evaluated from 31 pore water nitrate profiles obtained during six cruises between May and October. All profiles had well separated zones of nitrification and denitrification. High near-surface nitrate concentrations prevented the influx of nitrate from the bottom water. The denitrification rates obtained from steady-state-modelling ranged from 0.13 to 2.56 μmol N cm⁻² y⁻¹ and showed an exponential increase both with decreasing water depth and with increasing rate of organic carbon degradation. Denitrification rates in a nearby canyon, which did not follow these relationships, were estimated to be much higher as a result of erosion and redistribution of organic matter. Denitrification at the Goban Spur slope and rise is much lower than previously reported for similar environments in the Pacific resulting predominantly from the different oxygen and nitrate concentrations in the bottom water. A weighted average for the whole slope and rise sediment system shows that 17% of the particulate organic nitrogen input (8.93 μmol N cm⁻² y⁻¹) is denitrified and only 1% is buried, the rest being released as nitrate. Although being ten times higher compared with basin sediments, denitrification on the slope and rise is several times lower than on the adjacent shelf.     

Spatial and Temporal Distribution of Oxidation Events Occurring Below the Sediment-Water Interface

Abstract. Irrigation and bioturbation lead to transport of dissolved oxygen into anoxic sediments. The depthdistribution of local oxygen input and the total time of oxygen presence was measured at randomly sampled locations within anoxic sediments, originating from the North Sea.
In the laboratory, continuous redox potential records, displaying a transient increase and decrease when in contact with oxygen for a limited time, were used to record oxidation events'. Oxygen microelectrodes were used to confm the presence of oxygen. Measurements were performed for 180 d at 230 locations in the top 6 cm of sediment cores containing the natural macrofauna community.
4783 oxidation events m^-2· d^-1 were recorded within the upper 6 cm of the sediment. The number and duration of oxidation events declined with sediment depth below the oxic zone. Oxygen was present in the anoxic sediment, as determined from redox potential measurements, ≥ 6 h per day at 10% of the randomly chosen locations within the upper 3 cm. The overall distribution of oxidation events and their duration suggest that local, pulsed additions of oxygen by irrigation may be sufficient to maintain an oxidised sediment layer ( sensu J orgensen amp; R evsbech , 1989). Oxic environments along burrow walls rapidly fluctuate between oxic and anoxic conditions. Using oxygen microelectrodes the presence of oxygen (oxic conditions) in these halos was found to range from 2 to 12 h per day. Continuous redox measurements show that oxidised conditions fluctuate with the oxygen pulses and display the same durations, although these may range up to 21 h per day. Oxic and oxidised sediment volumes are estimated to represent < 1% and 3.7%. respectively, of the anoxic sediment to 6 cm depth. Recognition of temporal variability and spatial heterogeneity of sedimentary conditions may prove valuable for future conclusions drawn in other research fields.     

Sediment community oxygen consumption in the deep Gulf of Mexico

Sediment community oxygen consumption (SCOC) has been measured from the continental shelf out to the Sigsbee Abyssal Plain in the NE Gulf of Mexico (GoM). SCOC rates on the continental shelf were an order of magnitude higher than those on the adjacent continental slope (450–2750 m depth) and two orders of magnitude higher than those on the abyssal plain at depths of 3.4–3.65 km. Oxygen penetration depth into the sediment was inversely correlated with SCOC measured within incubation chambers, but rates of SCOC calculated from either the gradient of the [O₂] profiles or the total oxygen penetration depth were generally lower than those derived from chamber incubations. SCOC rates seaward of the continental shelf were lower than at equivalent depths on most continental margins where similar studies have been conducted, and this is presumed to be related to the relatively low rates of pelagic production in the GoM. The SCOC, however, was considerably higher than the input of organic detritus from the surface-water plankton estimated from surface-water pigment concentrations, suggesting that a significant fraction of the organic matter nourishing the deep GoM biota is imported laterally down slope from the continental margin.     

Seasonal variability of denitrification efficiency in northern salt marshes: an example from the St. Lawrence Estuary

In coastal ecosystems, denitrification is a key process in removing excess dissolved nitrogen oxides and participating in the control of eutrophication process. Little is known about the role of salt marshes on nitrogen budgets in cold weather coastal areas. Although coastal salt marshes are important sites for organic matter degradation and nutrient regeneration, bacterial-mediated nitrogen cycling processes, such as denitrification, remain unknown in northern and sub-arctic regions, especially under winter conditions. Using labelled nitrogen (15N), denitrification rates were measured in an eastern Canadian salt marsh in August, October and December 2005. Freshly sampled undisturbed sediment cores were incubated over 8h and maintained at their sampling temperatures to evaluate the influence of low temperatures on the denitrification rate. From 2 to 12 degrees C, average denitrification rate and dissolved oxygen consumption increased from 9.6 to 25.5 micromol N2 m-2 h-1 and from 1.3 to 1.8 mmol O2 m-2 h-1, respectively, with no statistical dependence of temperature (p>0.05). Nitrification has been identified as the major nitrate source for denitrification, supplying more than 80% of the nitrate demand. Because no more than 31% of the nitrate removed by sediment is estimated to be denitrified, the presence of a major nitrate sink in sediment is suspected. Among possible nitrate consumption mechanisms, dissimilatory reduction of nitrate to ammonium, metal and organic matter oxidation processes are discussed. Providing the first measurements of denitrification rate in a St. Lawrence Estuary salt marsh, this study evidences the necessity of preserving and restoring marshes. They constitute an efficient geochemical filter against an excess of nitrate dispersion to coastal waters even under cold northern conditions.     

Spatial patterns and environmental drivers of benthic infaunal community structure and ecosystem function on the New Zealand continental margin

To investigate regional drivers of spatial patterns in macro- and meio-faunal community structure (abundance, biomass and taxonomic diversity) and ecosystem function (sediment community oxygen consumption [SCOC]), we sampled two regions in close proximity on New Zealand's continental margin—the Chatham Rise and the Challenger Plateau. Sites (n = 15) were selected in water depths ranging from 266–1212 m to generate a gradient in sedimentary properties and, in particular, surface pelagic productivity. Both macro- and meio-fauna abundance and biomass was 2–3.5 times higher on the Chatham Rise than on the Challenger Plateau, reflecting regional differences in pelagic primary production. We also found significant inter- and intra-regional differences in macro-fauna taxonomic diversity with two distinctive site groupings in each region. Univariate and multivariate measures of macro-fauna community attributes were most strongly correlated with sediment photosynthetic pigment (explaining 24%–59% of the variation). Sediment pigment content was as equally important in explaining meio-fauna community structure (36%–7%). Unlike community structure, SCOC was most strongly correlated with depth (44%), most likely reflecting temperature effects on benthic metabolism. Our results highlight the importance of a benthic labile food supply in structuring infaunal communities on continental margins and emphasise a tight coupling between pelagic and benthic habitats.     

The effects of semi-lunar spring and neap tidal change on nitrification, denitrification and N2O vertical distribution in the intertidal sediments of the Yangtze estuary, China

To explore the influences of semi-lunar spring and neap tidal changes on nitrogen cycling in intertidal sediments, a comparative study among waterlogged, desiccated and reflooded systems was carried out in August 2005 and February 2006 by analyzing nitrification, denitrification and N₂O depth profiles in the intertidal flats of the Yangtze estuary. Laboratory experiments showed that alternating emersion and inundation resulted in the significant changes in nitrification and denitrification rates in the intertidal sediment systems. Due to the desiccation-related effects, lowest nitrification and denitrification rates were observed in the desiccated sediment cores. Highest nitrification and denitrification rates were however detected in the waterlogged and reflooded systems, respectively. It is hypothesized that the highest nitrification rates in the waterlogged sediments were mainly attributed to higher nitrifier numbers and NH₄⁺ being more available, whereas the availability of NO₃⁻ might dominate denitrification in the reflooded sediments. In addition, the highest N₂O concentrations were detected in the reflooded sediment cores, and the lowest found in the dried sediment cores. It was also shown that N₂O in the intertidal sediments was mainly from nitrification under the desiccated condition. In contrast, N₂O in the intertidal sediments was produced mainly via denitrification under the waterlogged and reflooded conditions. It is therefore concluded that the semi-lunar tidal cycle has a significant influence on nitrification, denitrification and N₂O production in the intertidal sediment systems.     

Accumulation of total CO2 during stagnation in the Baltic Sea deep water and its relationship to nutrient and oxygen concentrations

Accumulation of total CO₂ (C_T) was investigated in the sub-halocline deep water of the Gotland Sea (Baltic Sea) during a period of stagnation from 1995 to 1999. Depth profiles for C_T, nitrate, phosphate, and oxygen were measured during seven cruises in a grid consisting of 26 stations. The mean C_T increased by more than 60 μmol/kg from October 1995 to July 1999 corresponding to a mean accumulation rate of 1.1 mol/m² year. Taking into account vertical mixing, the vertical distribution of the C_T accumulation was used to determine mineralization rates at different depths. High rates immediately below the halocline indicated the existence of a fraction of organic matter, which is rapidly mineralized during sinking through the water column. A second fraction is more refractive and accumulates at the sediment surface in the deep center of the basin where it is slowly mineralized and partly buried. Phosphate release rates in anoxic waters and especially at the redoxcline were substantially higher than those estimated on the basis of the carbon mineralization and the Redfield C/P ratio. This is attributed to non-Redfield mineralization ratios and the dissolution of iron oxide/phosphate associates. The formation of nitrate by mineralization under oxic conditions was almost completely compensated by denitrification. Using the carbon mineralization rates and a C/N ratio of 8.4, a denitrification rate of 280 mmol/m² year was obtained, which approximately balances the input of nitrate/ammonia into the surface water. Relating the apparent oxygen utilization (AOU) to the C_T fraction that was generated by mineralization yielded a carbon mineralization/O₂ consumption ratio of 0.83.     

Denitrification and the nitrogen gas excess in the eastern tropical South Pacific oxygen deficient zone

Recent studies of the nitrogen gas excess produced during water column denitrification have indicated that water column denitrification rates calculated using nitrate deficit-type methods could be a substantial underestimate. Since there are no other significant processes that produce (or consume) N₂ in the oxygen deficient zone (ODZ), its excess above background can be used to estimate the amount of denitrification, avoiding assumptions made in nitrate deficit calculations of the composition of the respired organic matter and also uncertainties in the nitrogen removal pathways. Dissolved N₂, Ar, and nutrient concentrations were measured at 2 stations in the ODZ of the eastern tropical South Pacific (ETSP) in order to compare the nitrogen gas excess with the dissolved inorganic nitrogen (DIN) deficit due to denitrification. In contrast with previous findings in the Arabian Sea ODZ, the shapes of the N₂ excess and DIN deficit profiles were similar in the ETSP ODZ, with maxima at the top of the ODZ. Maximum DIN deficits at each station were 19 and 18 μM N compared to the maximum N₂ excesses of 15 and 20 μM N, respectively. Given the same considerations of the volume and residence time for the oxygen deficient zone waters, denitrification rates for the ETSP estimated from the N₂ excess would be comparable or no greater than 30% larger than the one determined using the DIN deficit. This implies that the source of the DIN removed from the ODZ is either deep sea nitrate or organic matter with an N:P ratio close to Redfield.     

Temporal changes and spatial variation of soil oxygen consumption, nitrification and denitrification rates in a tidal salt marsh of the Lagoon of Venice, Italy

The aim of the present study was to investigate seasonal and spatial patterns of soil oxygen consumption, nitrification, denitrification and fluxes of dissolved inorganic nitrogen (DIN) in a tidal salt marsh of the Lagoon of Venice, Italy. In the salt marsh, intact soil cores including overlying water were collected monthly at high tide from April to October in salt marsh creeks and in areas covered by the dominant vegetation, Limonium serotinum. In May, cores were also collected in areas with vegetation dominated by Juncus maritimus and Halimione portulacoides. In laboratory incubations at in situ temperature in the dark, flux rates of oxygen and DIN were monitored in the overlying water of the intact cores. ¹⁵N-nitrate was added to the overlying water and nitrification and denitrification were measured using isotope-dilution and -pairing techniques. The results show that highest soil oxygen consumption coincided with the highest water temperature in June and July. The highest denitrification rates were recorded in spring and autumn coinciding with the highest nitrate concentrations. Soil oxygen consumption and nitrification rates differed between sampling sites, but denitrification rates were similar among the different vegetation types. The highest rates were recorded in areas covered with L. serotinum. Burrowing soil macrofauna enhanced oxygen consumption, nitrification and denitrification in April and May. The data presented in this study indicate high temporal as well as spatial variations in the flux of oxygen and DIN, and nitrogen transformations in the tidal salt marshes of the Venice lagoon during the growth season. The results identify the salt marshes of the Venice lagoon as being metabolically very active ecosystems with a high capacity to process nitrogen.     

Impact of trace metals on denitrification in estuarine sediments of the Douro River estuary,Portugal

Denitrification influences the nitrogen budget in estuaries by removing fixed nitrogen from the inorganic pool; rates are dependent on both geological and geographic conditions as well as increasing anthropogenic impacts. In this study the effects of copper (Cu), chromium (Cr), zinc (Zn), cadmium (Cd) and lead (Pb), on the denitrification pathway were evaluated in subtidal and intertidal sediments of the Douro River estuary. Dinitrogen, N₂O and NO₂⁻ production rates were measured in triplicate slurries of field samples under different treatments of metal concentrations. Results demonstrated that similar metal amendments led to different site responses for denitrification, suggesting that variations in sediment properties (metal concentrations, grain size, organic matter content, etc.) and/or differences in denitrifying community tolerance modulate the level of metal toxicity. Denitrifying communities in subtidal muddy sediments were not affected by increasing concentrations of metals. In contrast, intertidal sandy sites revealed high sensitivity to almost all trace metals tested; almost complete inhibition by Cr (95%) and Cu (85%) was observed for 98 and 79 μg per gram of wet sediment respectively, and by Zn (92%) at the highest concentration added (490 μg per gram of wet sediment). Moreover, the addition of trace metals stimulated N₂O and NO₂⁻ accumulation in intertidal sandy (Zn, Cu, Cr and Cd) and muddy sediments (Cu and Zn), demonstrating a pronounced inhibitory effect on specific steps within the denitrification enzymatic system. In summary, the results obtained suggest that, according to the type of estuarine sediment, trace metals cannot only reduce total N removal from an estuary via denitrification but also can enhance the release of N₂O, a powerful greenhouse gas.     

渤海沉积物中细菌群落结构和基因丰度的空间分布特征

This study investigated differences in the community structure and environmental responses of the bacterial community in sediments of the Bohai Sea.Illumina high-throughput sequencing technology and real-time PCR were used to assay the bacterial 16S rRNA genes in the surface sediments of 13 sampling stations in the Bohai Sea.The results showed that sediments at the majority of the 13 sampling stations were contaminated by heavy metal mercury.The main phyla of bacteria recorded included Proteobacteria(52.92%),Bacteroidetes(11.76%),Planctomycetes(7.39%),Acidobacteria(6.53%)and Chloroflexi(4.97%).The genus with the highest relative abundance was Desulfobulbus(4.99%),which was the dominant genus at most sampling stations,followed by Lutimonas and Halioglobus.The main factors influencing bacterial community structure were total organic carbon,followed by depth and total phosphorus.The content of lead,cadmium,chromium,copper and zinc had a consistent effect on community structure.Arsenic showed a negative correlation with bacterial community structure in most samples,while the impact of mercury on community structure was not significant.The bacterial community in sediment samples from the Bohai Sea was rich in diversity and displayed an increase in diversity from high to low latitudes.The data indicated that the Bohai Sea had abundant microbial resources and was rich in bacteria with the potential to metabolize many types of pollutants.     

Size partitioning of microbial and meiobenthic biomass and respiration on Brown's Bank, south-west Nova Scotia

Biomass and respiration (oxygen consumption) of bacteria, microfauna, and meiofauna were measured in coarse sand sediment from Brown's Bank (172 m) off Nova Scotia, Canada. Community biomass, excluding macrofauna, had a median value of 35 mg C m⁻², dominated by bacteria (51%), microfauna (25%), and a minor meiofauna component (2·5%). Protozoan microfauna were mostly microflagellates (colourless cryptomonads). The experimental design allowed partitioning of benthic metabolism without using subtraction from whole community rates. Addition-removal experiments with fauna separated into size categories were used to construct a respiration-biomass regression for all taxa. Respiration rates for faunal groups were then calculated from their biomass in the natural sediment. Total microbial and meiofaunal community respiration had a median rate of 0·55 ml O₂ m⁻² h⁻¹ which was partitioned into median proportions of bacteria (50%) microflagellates (27%), and metazoan meiofauna (4%). Correlations among faunal biomass values from incubated vials of sediment suggested that bacteria were important prey for protozoans. With added biomass of meiofauna, protozoans also became a potentially important source of prey. The results demonstrated the significance of microflagellate protozoans in these sediments and their metabolic and trophic importance relative to meiofauna and even bacteria.     

Benthic Nutrient Recycling in Port Phillip Bay, Australia

Benthic chamber measurements of the reactants and products involved with biogenic matter remineralization (oxygen, ammonium, nitrate, nitrite, phosphate, silicate, TCO₂and alkalinity) were used to define solute exchange rates between the sediment and overlying water column of Port Phillip Bay, Australia. Measurements at various sites throughout the bay, conducted during the summers of 1994 and 1995, indicate that the variability in flux values within a site is comparable to year-to-year variability (±50%). Four regions of the bay were distinguished by sediment properties and the northern region was identified as having 3–30 times greater nutrient regeneration rates than the other regions. Benthic recycling accounted for 63 and 72% of the annualized N and P input, respectively, to the entire bay as determined by summing benthic, dissolved riverine, atmospheric and dissolved effluent sources. However, bay-wide sedimentary denitrification accounted for a loss of 63% of the potentially recyclable N. This fraction is higher than many other coastal regions with comparable carbon loading. Denitrification efficiency is apparently not enhanced by benthic productivity nor by bio-irrigation. The rate of bio-irrigation is negatively correlated with denitrification efficiency. Bio-irrigation was studied using radon-222 and CsCl spike injection chamber measurements. Radon fluxes from sediments in Port Phillip Bay were enhanced over the diffusive flux by 3–16 times. The modelled rate of loss of Cs from chamber water was positively correlated with radon flux enhancement results. Both methods identify regions within Port Phillip Bay that have particularly high rates of non-diffusive pore-water overlying water solute exchange.     

Oxygenation episodes on the continental shelf of central Peru: Remote forcing and benthic ecosystem response

The interplay between the oxygen minimum zone and remotely-forced oxygenation episodes determines the fate of the benthic subsystem off the Central Peruvian coast. We analyzed a 12 year monthly time-series of oceanographic and benthic parameters at 94 m depth off Callao, Central Peru (12°S), to analyze: (i) near-bottom oxygen level on the continental shelf in relation to dynamic height on the equator (095°W); and (ii) benthic ecosystem responses to oxygen change (macrobiotic infauna, meiofauna, and sulphide-oxidizing bacteria, Thioploca spp.). Shelf oxygenation episodes occurred after equatorial dynamic height increases one month before, consistent with the propagation of coastal trapped waves. Several but not all of these episodes occurred during El Niños. The benthic biota responded to oxygenation episodes by undergoing succession through three major ecological states. Under strong oxygen deficiency or anoxia, the sediments were nearly defaunated of macro-invertebrates and Thioploca was scarce, such that nematode biomass dominated the macro- and meiobiotas. When frequency of oxygenation events reduced the periods of anoxia, but the prevailing oxygen range was 10–20 μmol L⁻¹, mats of Thioploca formed and dominated the biomass. Finally, with frequent and intense (>40 μmol L⁻¹) oxygenation, the sediments were colonized by macrofauna, which then dominated biomass. The Thioploca state evolved during the 2002–2003 weak EN, while the macrofauna state was developed during the onset of the strong1997–1998 EN. Repeated episodes of strong oxygen deficiency during the summer of 2004, in parallel with the occurrence of red tides in surface waters, resulted in the collapse of Thioploca mats and development of the Nematode state. Ecological interactions may affect persistence or the transition between benthic ecosystem states.