A methodology for community-level hypothesis testing applied to detect trends in phytoplankton and fish communities in Irish waters

Many simple (univariate, bivariate) and complex (multivariate) statistical techniques are used to investigate trends in biological communities and to test hypotheses about potential relationships between ecosystem components. However, the simple methods that are commonly used (regression and correlation) are prone to Type I error (rejecting a true null hypothesis) when applied repeatedly. Although multivariate methods are preferable for community analysis, their computations are mathematically demanding and the interpretation of their outputs can be challenging. We present simple community analysis (SCA), an intuitive methodology with which to test for trend and correlation at the community-level. We demonstrate SCA using fish survey and phytoplankton count data: the non-parametric test statistic, Kendall's tau, is used to determine the strength of trends in abundance in 65 species of fish sampled during the Irish groundfish survey (maximal length of sampling periods were 1999–2007 in ICES division VIIg and 2002–2007 in divisions VIa, VIIb and VIIj, however catches of numerous species were not recorded prior to 2003) and in 77 genera of phytoplankton sampled at Irish aquaculture sites (1991–2002). The sample distribution of the test statistic (tau is used here, but other measures may be used) is compared to the expected distribution using distributional tests (Kolmogorov–Smirnov) to evaluate the significance of community-level trends. The phytoplankton community has been increasing in abundance on Irish western and southwestern coasts (Kolmogorov–Smirnov test D > 0.5, p < 0.001). Similarly, and in agreement with previously published long-term studies, Lusitanian fish have been increasing on the shelf to the north and west of Ireland (D ≥ 0.35, p < 0.001), while the boreal community has been declining to the south (southeast, D = 0.47, p < 0.001; southwest, D = 0.32, p = 0.03). Although SCA cannot identify causality, the trends in fish communities are as expected given the combined impacts of climate change and fishing: thus, we suggest that these are currently the main drivers of change and the precise mechanisms at play merit further study with long-term data. Biological processes at aquaculture sites should be investigated further as possible mechanisms explaining both the observed positive trends in the phytoplankton community and the restriction of negative trends to Heterosigma and eight dinoflagellate genera. Applied in conjunction with other statistical tools, SCA should aid researchers who aim to describe change in communities and community-level relationships with covariates. SCA is a powerful tool for hypothesis testing at the community-level, which simultaneously produces information at the community member level for more detailed insight, while providing simple summary statistics for managers and policy makers.     

Bacterial production,glucosidase activity and particle-associated carbohydrates in Dona Paula bay,west coast of India

Size-fractionated bacterial production, abundance and α- and β- glucosidase enzyme activities were studied with respect to changes in hydrography, total suspended matter (TSM), chlorophyll a, particulate organic carbon and nitrogen ratio (POC:PON), 1.5 M NaCl-soluble and 10 mM EDTA-soluble carbohydrates (Sal-PCHO and CPCHO) and transparent exopolymeric particles (TEP) in the surface waters from July 1999–2000 at a shallow coastal station in Dona Paula Bay, west coast of India. The bulk of the total bacterial production and glucosidase activity were associated with particles (75% and >80%, respectively). Total bacterial production was linearly correlated to chlorophyll a (r = 0.513; p < 0.05) whereas enzyme activity was significantly correlated to TSM (α-glucosidase: r = 0.721 (p < 0.001); β-glucosidase: r = 0.596 (p < 0.01)). Both α-glucosidase (r = 0.514; p < 0.05) and β-glucosidase enzymes (r = 0.598; p < 0.01) appeared to be involved in the degradation of CPCHO and Sal-PCHO, respectively. Changes in α-glucosidase/β-glucosidase ratios highlighted the varying composition of particulate organic matter. The bacterial uptake of ¹⁴C-labeled bacterial extracellular carbohydrate measured over 11 days showed a strong linear correlation between ¹⁴C-uptake and bacterial production using tritiated thymidine. The turnover rate of ¹⁴C-labeled carbohydrate-C was 0.52 d⁻¹, higher than the estimated annual mean potential carbohydrate carbon turnover rate of 0.33 ± 0.2 d⁻¹. Our study suggests that carbohydrates derived from sediments may serve as an important alternative carbon source sustaining the bacterial carbon demand in the surface waters of Dona Paula Bay.     

Spatial and temporal variability in particle-bound pesticide exposure and their effects on benthic community structure in a temporarily open estuary

Spatial and temporal variations in particle-bound pesticide contamination, natural environmental variables, and benthic abundance were measured during the dry summer season within a temporarily open estuary (Lourens River). This study focused on the effect of particle-associated pesticides on the dynamics of the benthic community (including epi-benthic, hyper-benthic, and demersal organisms) by comparing two runoff events, differing in their change in pesticide concentration and environmental variables. The two chosen sites were situated within the upper and middle reaches of the estuary and differ significantly in salinity (p = 0.001), flow (p = 0.5), temperature (p < 0.001) and particulate organic carbon in the sediment (p < 0.001). Generally higher particle-bound pesticides were found in the upper reaches.     

Selective uptake of prokaryotic picoplankton by a marine sponge (Callyspongia sp.) within an oligotrophic coastal system

Marine sponges are key players in the transfer of carbon from the pelagic microbial food web into the benthos. Selective uptake of prokaryotic picoplankton (<2 μm) by a demosponge (Callyspongia sp.), and carbon flux through this process, were examined for the first time in the oligotrophic coastal waters of southwestern Australia, where sponge abundance and biodiversity ranks among the highest in the world. Water sampling and flow rate measurements were conducted over five sampling occasions following the InEx method of Yahel et al. (2005), with heterotrophic bacteria and autotrophic Synechococcus cyanobacteria identified and enumerated by flow cytometry. Callyspongia sp. demonstrated high filtration efficiencies, particularly for high DNA (HDNA) bacteria (up to 85.3% in summer 2008) and Synechococcus (up to 91.1% in autumn 2007), however efficiency varied non-uniformly with time and food type (p < 0.01). Overall filtration efficiency for Synechococcus (86.6 ± 6.3%; mean ± s.d.) was always significantly higher (p < 0.05) than for low DNA (LDNA) bacteria (40 ± 17.2%), except during winter 2007 (p = 0.14) when ambient Synechococcus concentrations were lowest. When compared to ambient abundances of the different food types, Callyspongia sp. exhibited consistently negative selectivity for LDNA bacteria and positive selectivity for Synechococcus, while HDNA bacteria was generally a neutral or positive selection. The total carbon removal rate (sum of all prokaryotic picoplankton cells), calculated on a per unit area basis, varied significantly with time (p < 0.01), with lowest rates recorded during the winter (0.5 ± 0.4–0.6 ± 0.8 mg C m⁻² d⁻¹) and highest values recorded in summer (3.5 ± 1.9 mg C m⁻² d⁻¹). These flux estimates quantify the role of a demosponge species in the ultimate fate of prokaryotic picoplankton within the nearshore food webs of southwestern Australia, and support the conclusion that sponges actively select food particles that optimise their nutritional intake.     

Temporal variation in abundance and fecundity of the invading copepod Eurytemora americana in Bahía Blanca Estuary during an unusual year

Eurytemora americana has been only reported as invader in Bahía Blanca Estuary, Argentina within the South Hemisphere. There are a few experimental researches under laboratory conditions done with this species and its reproductive behaviour around the world is very scarce. Consequently, it is still not possible to completely understand its population dynamics. In the present study, E. americana reproductive temporal behaviour and relationships among abundance, female size, egg production and hatching success were examined in the Bahía Blanca Estuary, during 2007 pulse. In order to determine the potential relationships between these variables and the environmental variables, experimental incubations were conducted in the laboratory simulating natural conditions. Spearman’s rank correlation was used to analyze the relationships among all variables. Temporal change of biotic and environmental variables was corroborated by a Mann–Whitney/Kruskal–Wallis non-parametric tests, with significant differences (p ? 0.01) in all variables throughout the study. Abundance population results showed very high values in relation to those recorded in recent years in Bahía Blanca Estuary. This response could be due to the unusual combination of environmental factors (polar wave with temperatures ≤6 °C and a drought period with high salinities, 32.7–36.6) recorded during the studied winter period. Significant positive correlations between abundance and salinity (p < 0.01, n = 226), and hatching success (p < 0.01, n = 25) as well as a significant negative correlation between abundance and chlorophyll a (p < 0.01, n = 226) were found. Although E. americana shows a k-strategy within its annual pulse, it presented two markedly distinct behaviours depending on temporal environmental variability. From July to early september, when the estuary evidenced high salinity, low temperature and high food availability, E. Americana showed large females, large clutch size and high hatching success. When environmental conditions became unfavorable from September to October, small females, small clutch size and very low hatching success were observed. The latter is associated with diapause egg laying which ensures population recruitment. According to our findings the particular combination of low temperatures, high salinities and high available food (i.e. variables which each year modulate its pulse) during 2007 winter–spring, favored the great development of E. americana. This invading species in its opportunistic role has managed to exploit a vacant niche in the estuary, developing two different behaviours within the k-strategy depending on change in environmental conditions.     

Productivity cycles in the coastal upwelling area off Concepción: The importance of diatoms and bacterioplankton in the organic carbon flux

Recurrent coastal upwelling is recognized as one of the main factors promoting the exceptionally high productivity of the Humboldt Current System. Herein, we study time series data of gross primary production (2003-2006) and its fluctuation in relation to seasonal changes in the light and nutrient field of the Concepción upwelling ecosystem. Concurrent measurements of gross primary production, community respiration, bacterial secondary production, and sedimentation rates allowed a characterization of the main carbon fluxes and pathways in the study area. The integrated values of gross primary production were higher during the upwelling period (>1 g C m⁻² d⁻¹; October-April; that is, early spring to early austral fall). Seasonal changes in the system were also reflected in community respiration, organic matter sedimentation, and bacterial production rates, which varied along with the gross primary production. The significant correlation between gross primary production and community respiration (Spearman, r = 0.7; p < 0.05; n = 18) reflected an important degree of coupling between organic matter formation and its usage by the microplanktonic community during periods when gross primary production/community respiration were highly similar. Higher gross primary production values (>6 g C m⁻² d⁻¹) were consistently associated with maximum biomass levels of Skeletonema costatum and Thalassiosira subtilis. We observed a positive correlation between gross primary production and the sedimentation of intact diatom cells (Spearman, r = 0.5, p < 0.05, n = 17). Our data suggest that, in the Concepción upwelling ecosystem, bacteria utilize an important fraction of the gross primary production. If our interpretations are correct, they leave unanswered the question of how the system supports the extremely high fish biomass levels, therein pointing out the system’s limited capacity to buffer the evasion of CO₂ following upwelling.     

Microphytobenthic primary production as C uptake in sublittoral sediments of the Gulf of Trieste (northern Adriatic Sea): Methodological aspects and data analyses

From January 2003 to December 2004 microphytobenthic primary production was estimated both from in situ (MPPs) and in the laboratory (MPPp) ¹⁴C-incubation of slurries collected in a coastal site of the Gulf of Trieste (northern Adriatic Sea). MPPs values varied from −7.54 ± 3.12 to 34.59 ± 7.66 mg C m⁻² h⁻¹ over the whole period. The lowest MPPs were observed in November 2003 and August 2004, while the highest MPPs in July 2003 and May 2004, in correspondence with high PAR at the bottom. Significant correlations between MPPs and the microphytobenthic biomass (BIOM) (r = 0.75, p < 0.001), between MPPs and PAR at the bottom (r = 0.54, p < 0.01) and between MPPs and OXY (r = 0.50, p < 0.05) were revealed. MPPp values were higher than MPPs ones in 15 out of 23 observations, with the highest MPPp recorded in July 2003. At 17 m depth a seasonal pattern of sampling months was revealed by the cluster analysis. The role of abiotic parameters in determining this seasonal pattern was highlighted by the PCA, with the first axis correlated with MPPs and PAR, and the second one with temperature. Applying the fuzzy sets it resulted that spring months showed a higher degree of membership with MPPs, summer months with temperature and autumn–winter months with OXY. The microphytobenthic community did not seem to be photosynthetically active throughout the study period. From August–September to December low or negative MPPs values were recorded. We infer that during these months a shift from the autotrophic to heterotrophic metabolism of the benthic microalgae occurred in correspondence with low PAR and/or high temperature at the bottom. Despite the progressive lowering of the trophy of the study area occurred during the last 20 years, we found higher primary production values than those estimated two decades earlier.     

Limno-tolerant bacteria govern nitrate concentration in Mandovi Estuary,India

The spatial and temporal abundances of limno-tolerant and halo-tolerant bacteria were investigated in the tide-dominated Mandovi estuary along the west coast of India. These investigations were carried out in relation to various environmental parameters on a monthly basis at three fixed stations for a year. On an annual basis, the estuary showed an average salinity of 28.2, 17.4, and 12.6 at the mouth, midstream and upstream region. Halo-tolerant retrievable count (HTRC) and limno-tolerant retrievable count (LTRC) of bacteria were in the order of 10⁶ L⁻¹. Among the environmental parameters, a strong negative relationship between salinity and nitrate (r = −0.806; p < 0.001) suggested that 64% of the variation could be due to fresh water influence in the estuary. The limno-tolerant retrievable count (LTRC) brought about 23% variations in nitrate concentration. This influence was maximum during the monsoon (r = 0.522; p < 0.05) especially in the surface waters (r = 0.624; p < 0.001) suggesting nitrate reduction by LTRC. Measurements of nitrate reducing activity (NRA) in whole-water samples along the salinity gradient in the estuary also revealed higher reduction rates at lower salinity upstream. This was further confirmed by culture experiments where the limno-tolerant bacteria showed higher NRA than halo-tolerant forms. It is therefore suggested that LTRC is more actively involved in the variation of nitrate that enters the Mandovi estuary particularly during the monsoon.     

Litterfall dynamics and nutrient decomposition of arid mangroves in the Gulf of California: Their role sustaining ecosystem heterotrophy

This study shows results on litterfall dynamics and decay in mangrove stands of Avicennia germinans distributed along a latitudinal gradient (three forest sites) in the Gulf of California, in order to assess whether internal sources could support the observed mangrove ecosystem organic deficit in this arid tropic. Total mean annual litterfall production increased southward (712.6 ± 53.3, 1501.3 ± 145.1 and 1506.2 ± 280.5 g DW m⁻² y⁻¹, in the Yaqui, Mayo and Fuerte areas respectively), leaves being the main component of litter in all locations during the entire year, followed by fruits. The wet season (June–September) showed the highest litterfall rates through fruits. The temporal trend of litterfall production was significantly explained through mean air temperature (R² = 68%) whilst total annual litter production in the entire region showed a statistically significant relationship with total soil phosphorus, salinity, total nitrogen, organic matter and tree height (R² = 0.67). Throughout 117 days of the decomposition experiment, the litter lost 50% of its original dry weight in 5.8 days (average decay rate of 0.032 ± 0.04 g DW d⁻¹) and there were not significant differences in the remaining mass after 6 days. The percentage of both C and P released from the litter correlated significantly with the ratio of tidal inundated days to total experiment days (R² = 0.62, p = 0.03 and R² = 0.67, p = 0.02, respectively); however, the frequency of tidal inundation only showed a significant increase in C release from Avicennia litter after 6 and above 48 days of decomposition. Whereas the total C content of litter bags decreased linearly over the decomposition to (% Total C = 5.52 − 0.46 days, R² = 0.81, p = 0.0005), N content displayed an irregular pattern with a significant increase of decay between 48 and 76 days from the beginning of the experiment. The pattern for relative P content of litter revealed reductions of up to 99% of the original (%tot-P = −9.77 to 1.004 days, R² = 0.72, p = 0.01) although most of the P reduction occurred between 17 and 34 days after the experiment started. Soil N and P contents, which exhibited significant differences in the course of the decomposition experiment, appeared to show significant differences between sampling sites, although they were not related to tidal influence, nor by leaf and nutrient leaching. In a global basis, C/N litter ratios decreased linearly (C/N = 32.86 − 0.1006 days, R² = 0.62, p = 0.02), showing a strong and significant correlation with meteorological variables (R² = 0.99, p = 0.01). C/P ratios of litter increased through an exponential function (C/P = 119.35e^0.04day, R² = 0.89, p < 0.001). Changes in the remaining percentage of litter mass during the experiment were significantly correlated with soil C/N ratio (R² = 0.56, p = 0.03) as well as with the soil C/P ratio (R² = 0.98, p < 0.001). Our results of litter decomposition dynamics in this mangrove support the fact of null net primary productivity of the arid mangrove wetlands: fast litter decomposition compensates the ecosystem organic deficit in order to sustain the mangrove productivity. Litter decomposition plays a key role in the ecosystem metabolism in mangroves of arid tropics.     

Similar potential ATP-P production and enzymatic activities in the microplankton community off Concepción (Chile) under oxic and suboxic conditions

The effects of the oxygen minimum zone on the metabolism of the heterotrophic microplankton community (0.22-100 μm) in the Humboldt Current System, as well as the factors controlling its biomass production, remain unknown. Here we compare the effect of four sources of dissolved organic carbon (glucose, oxaloacetate, glycine, leucine) on microbial biomass production (such as ATP-P) and the potential enzymatic activities involved in catabolic pathways under oxic and suboxic conditions. Our results show significant differences (p < 0.05) in the ATP-P production when induced by the different substrates that are used as dissolved organic carbon herein. The induction of ATP-P production is enhanced from glucose < oxaloacetate < glycine < leucine. Nevertheless, for individual substrates, no significant differences were found between incubation under oxic and suboxic conditions except in the case of leucine. For this amino acid, the induction of ATP-P synthesis was higher under suboxic than oxic conditions. The data sets of all the substrates used showed greater potential ATP-P production under suboxic than oxic conditions. The results of the potential enzymatic activities suggest that malate dehydrogenase has the highest signal of NADH oxidization activity in the microbial assemblage. Furthermore, for all experiments, the malate dehydrogenase activity data set had a significant relationship with ATP-P production. These findings suggest that the microbial community inhabiting the oxygen minimum zone has the same or greater potential growth than the community inhabiting more oxygenated strata of the water column and that malate dehydrogenase is the activity that best represents the metabolic potential of the community.     

Impact of the Eastern Mediterranean Transient on the distribution of anthropogenic CO2 and first estimate of acidification for the Mediterranean Sea

In the Mediterranean Sea the carbon chemistry is poorly known. However, the impact of the regional and large-scale anthropogenic pressures on this fragile environment rapidly modifies the distribution of the carbonate system key properties like C_T (total dissolved inorganic carbon), A_T (total alkalinity), C_ANT (anthropogenic CO₂), and pH. This leads inexorably to the acidification of its waters. In order to improve our knowledge, we first develop interpolation procedures to estimate C_T and A_T from oxygen, salinity, and temperature data using all available data from the EU/MEDAR/MEDATLAS II database. The acceptable levels of precision obtained for these estimates (6.11 ??mol-kg⁻¹ for C_T and 6.08 ??mol kg⁻¹ for A_T) allow us to draw the distribution of C_ANT (with an uncertainty of 6.75 ??mol kg⁻¹) using the Tracer combining Oxygen, inorganic Carbon, and total Alkalinity (TrOCA) approach. The results indicate that: 1) all Mediterranean water bodies are contaminated by anthropogenic carbon; 2) the lowest concentration of C_ANT is 37.5 ??mol kg⁻¹; and 3) the western basin is more contaminated than the Eastern basin. After reconstructing the distribution of key properties (C_T, A_T, C_ANT) for four periods of time (between 1986 and 2001) along a west-east section throughout the whole Mediterranean Sea, we analyze the impact of the Eastern Mediterranean Transient (EMT). Not only has the concentration of C_ANT increased (especially in the intermediate and the bottom layers of the eastern basin, during and after the EMT), but also the distribution of all properties has been considerably perturbed. This is discussed in detail. For the first time, the level of acidification is estimated for the Mediterranean Sea. Our results indicate that for the year 2001 all waters (even the deepest) have been acidified by values ranging from −0.14 to −0.05 pH unit since the beginning of the industrial era, which is clearly higher than elsewhere in the open ocean. Given that the pH of seawater may affect a very large number of chemical and biological processes, our results stress the necessity to develop new programs of research to understand and then predict the evolution of the carbonate system properties in the Mediterranean Sea.     

Distinctive stable isotope ratios in important zooplankton species in relation to estuarine salinity gradients: Potential tracer of fish migration

To assess the potential of stable isotope ratios as an indicator of fish migration within estuaries, stable isotope ratios in important zooplankton species were analyzed in relation to estuarine salinity gradients. Gut contents from migratory juveniles of the euryhaline marine fish Lateolabrax japonicus were examined along the Chikugo River estuary of the Ariake Sea, which has the most developed estuarine turbidity maximum (ETM) in Japan. Early juveniles in March and April preyed primarily on two copepod species; Sinocalanus sinensis at lower salinities and Acartia omorii at higher salinities. Late juveniles (standard length > 40 mm) at lower salinities preyed exclusively on the mysid Acanthomysis longirostris until July and complementarily on the decapod Acetes japonicus in August. These prey species were collected along the estuary during the spring–summer seasons of 2003 and 2004, and their carbon and nitrogen stable isotope ratios (δ¹³C and δ¹⁵N) were evaluated. The δ¹³C values of prey species were distinct from each other and were primarily depleted within and in close proximity to the ETM (salinity < 10); S. sinensis (−26.6‰) < Acanthomysis longirostris (−23.3‰) < Acartia omorii (−21.1‰) < Acetes japonicus (−18.5‰). The overall gradient of δ¹³C with salinity occurred for all prey species and showed minor temporal fluctuations, while it was not directly influenced by the δ¹³C values in particulate organic matter along the estuary. In contrast to δ¹³C, the δ¹⁵N values of prey species did not exhibit any clear relationship with salinity. The present study demonstrated that δ¹³C has the potential for application as a tracer of fish migration into lower salinity areas including the ETM.     

Species-specific patterns of aggregation of wild fish around fish farms

Fish-farming structures are widespread in coastal waters and are highly attractive to wild fish. Several studies have estimated that tons to tens of tons of wild fish aggregate around fish farms. These estimates assumed that the majority of wild fish are concentrated immediately beneath farms, although this assumption has never been explicitly tested. We tested the hypothesis that abundances of wild fish would be greatest immediately beneath farms and progressively diminish with distance at 4 full-scale coastal salmon (Salmo salar) farms in Norway. At each farm, fish were counted with a video-camera system at 5 different distances from the cages (farm = 0 m, 25, 50, 100 and 200 m) throughout the water column on three separate days. Combined across all locations and times, the total abundance of wild fish was 20 times greater at the farm than at the 200 m sampling distance. Saithe (Pollachius virens) dominated assemblages at all 4 farms and were consistently significantly more abundant at the farm than at the 25–200 m distances. This ‘tight aggregation’ around farms corresponds to the reliance of saithe on waste feed when they school near farms. In contrast, patterns of distribution of both cod (Gadus morhua) and poor cod (Trisopterus minutus) varied among farms, with either highest abundances at the farm or a more even distribution of abundance across all 5 distances sampled. No specific pattern of aggregation was evident for the bottom-dwelling haddock (Melanogrammus aeglefinus). Our results suggest that the present 100 m no-fishing zone around salmon farms protects the greatest proportion of farm-aggregated saithe and cod from fishing during the daytime. However, whether this reduces their overall susceptibility to fishing requires further research regarding nighttime distribution and movements.     

Virioplankton distribution and activity in a tropical eutrophicated bay

The study of lysogeny in aquatic systems is an often overlooked aspect of microbial ecology, especially in tropical environments. Herein, the fraction of lysogenized cells (FLC) was detected in the surface waters of 20 coastal stations distributed from the eutrophicated shoreline to seaward waters of Hann Bay (Senegal). Concurrently, viral lytic infection rates were extrapolated from the frequency of visibly infected bacterial cells (FVIC), as determined from transmission electron microscopy observations. The experimental induction of prophage was observed in less than 3% of indigenous marine bacteria, suggesting that lysogenic stages of infection are rare in Hann Bay. Similarly, only 0.5–4.7% of bacteria showed visible signs of lytic infection. However, the positive correlation between the fraction of lysogenic and lytic cells (r = 0.67, p < 0.05, n = 20) may actually indicate that the coexistence of both lifestyles may be due to the massive and rapid induction of lysogens, potentially from the high levels of local UV radiation. Overall, we suggest that the determination of FVIC and FLC to examine the predominance of one type of cycle versus the other may be a source of misinterpretation in some particular aquatic environments.     

Bait-attending fauna of the Kermadec Trench, SW Pacific Ocean: Evidence for an ecotone across the abyssal-hadal transition zone

The bait-attending fauna of the abyssal-hadal transition zone of the Kermadec Trench, SW Pacific Ocean (4329-7966 m), was investigated using a baited camera and a trap lander. The abyssal stations (4329-6007 m) revealed a typical scavenging fish community comprising macrourids and synaphobranchid eels, as well as natantian decapods. At the hadal depths of 7199 and 7561 m, the endemic liparid Notoliparis kermadecensis was observed aggregating at the bait reaching surprisingly high numbers of 5 and 13, respectively. A total of 3183 invertebrate samples were collected (mean deployment time=16 h) of which 97.8% were of the order Amphipoda (nine families, 16 species). Ten of the amphipod species represent new distributional records for the Kermadec Trench and the New Zealand Exclusive Economic Zone; this includes the shallowest known record of the endemic hadal amphipod Hirondellea dubia (6000, 6007 m). Using amphipods to statistically examine the compositional change across the abyssal-hadal boundary, an ecotone between depths <6007 and >6890 m was found, indicating that there is an ecologically distinct bait-attending fauna in this trench.     

Microbial plankton abundance and heterotrophic activity across the Central Atlantic Ocean

The role of microorganisms in the transfer of carbon of marine systems is very important in open oligotrophic oceans. Here, we analyze the picoplankton structure, the heterotrophic bacterioplankton activity, and the predator-prey relationships between heterotrophic bacteria and nanoflagellates during two large scale cruises in the Central Atlantic Ocean (∼29°N to ∼40°S). Latitud cruises were performed in 1995 between March-April and October-November. During both cruises we crossed the regions of different trophic statuses; where we measured different biological variables both at the surface and at the deep chlorophyll maximum (DCM). The concentration of chlorophyll a varied between 0.1 and 0.8 mg m⁻³, the abundance of heterotrophic bacteria varied between <1.0 × 10⁵ and >1.0 × 10⁶ cells ml⁻¹, and that of heterotrophic nanoflagellates between <100 and >1.0 × 10⁴ cells ml⁻¹. The production of heterotrophic bacteria varied more than three orders of magnitude between <0.01 and 24 μgC L⁻¹ d⁻¹; and the growth rates were in the range <0.01-2.1 d⁻¹. In the Latitud-II cruise, Prochlorococcus ranged between <10³ and >3 × 10⁵ cells ml⁻¹, Synechococcus between <100 and >1.0 × 10⁴ cells ml⁻¹, and picoeukaryotes between <100 and >10⁴ cells ml⁻¹.Two empirical models were used to learn more about the relationship between heterotrophic bacteria and nanoflagellates. Most bacterial production was ingested when this production was low, the heterotrophic nanoflagellates could be controlled by preys during Latitud-I cruise at the DCM, and by predators in the surface and in the Latitud-II cruise. Our results were placed in context with others about the structure and function of auto- and heterotrophic picoplankton and heterotrophic nanoplankton in the Central Atlantic Ocean.     

Experimental study of unidirectional irregular wave slamming on the three-dimensional structure in the splash zone

The experimental investigation of unidirectional random wave slamming on the three-dimensional structure in the splash zone is presented. The experiment is conducted in the marine environment channel in the State Key Laboratory of Coastal and Offshore Engineering, Dalian University of Technology. The test wave is unidirectional irregular wave. The experiments are carried out with perpendicular random waves (β=0°) and oblique random waves (β=15°, 30°, 45°), the significant wave heights H_1/3 ranging from 7.5 to 20 cm with 2.5 cm increment, the peak wave periods T_p ranging from 0.75 to 2.0 s with 0.25 s increment, and the clearance of the model with respect to the significant wave height s/H_1/3 ranging from 0.0 to 0.5 with 0.1 increment. The statistical analysis results of different test cases are presented. The statistical distribution characteristics of the perpendicular irregular wave impact pressures are compared with that of the oblique irregular wave on the underside of the structure. The effect of the wave direction β on the wave impact forces on the underside of the structure is determined. The relation between the impact forces and the parameters such as the significant wave height, the relative structure width and the relative clearance of the structure is also discussed.     

Particle fluxes in San Pedro Basin, California: A four-year record of sedimentation and physical forcing

Moored sediment traps were deployed from January 2004 through December 2007 at depths of 550 and 800 m in San Pedro Basin (SPB), CA (33°33.0′N, 118°26.5′W). Additionally, floating sediment traps were deployed at 100 and 200 m for periods of 12-24 h during spring 2005, fall 2007, and spring 2008. Average annual fluxes of mass, particulate organic carbon (POC), ??¹³C_org, particulate organic nitrogen (PON), ??¹⁵N-PON, biogenic silica (bSiO₂), calcium carbonate (CaCO₃), and detrital material (non-biogenic) were coupled with climate records and used to examine sedimentation patterns, vertical flux variability, and organic matter sources to this coastal region. Annual average flux values were determined by binning data by month and averaging the monthly averages. The average annual fluxes to 550 m were 516±42 mg/m² d for mass (sdom of the monthly averages, n=117), 3.18±0.26 mmol C/m² d for POC (n=111), 0.70±0.05 mmol/m² d for CaCO₃ (n=110), 1.31±0.21 mmol/m² d for bSiO₂ (n=115), and 0.35±0.03 mmol/m² d for PON (n=111). Fluxes to 800 and to 550 m were similar, within 10%. Annual average values of ??¹³C_org at 550 m were −21.8±0.2‰ (n=108), and ??¹⁵N averages were 8.9±0.2‰ (n=95). The timing of both high and low flux particle collection was synchronous between the two traps. Given the frequency of trap cup rotation (4-11 days), this argues for particle settling rates ≥83 m/d for both high and low flux periods. The moored traps were deployed over one of the wettest (2004-2005, 74.6 cm rainfall) and driest (2006-2007, 6.6 cm) rain years on record. There was poor correlation (Pearson's correlation coefficient, 95% confidence interval) of detrital mass flux with: C_org/N ratio (r=0.10, p=0.16); ??¹⁵N (r=−0.19, p=0.02); and rainfall (r=0.5, p=0.43), suggesting that runoff does not immediately cause increases in particle fluxes 15 km offshore. ??¹³C_org values suggest that most POC falling to the basin floor is marine derived. Coherence between satellite-derived chlorophyll a records from the trap location (±9 km² resolution) and SST data indicates that productivity and export occurs within a few days of upwelling and both of these parameters are reasonable predictors of POC export, with a time lag of a few days to 2 weeks (with no time lag—SeaWiFS chlorophyll a and POC flux, r=0.25, p=0.0014; chlorophyll a and bSiO₂ flux, r=0.28, p=0.0002).     

High-damping, high-Reynolds VIV tests for energy harnessing using the VIVACE converter

The VIVACE converter enhances VIV to harness horizontal hydrokinetic energy of water flows. High-Reynolds and high-damping are required to operate VIVACE in ocean/river currents. Scarce VIV data exist in that parametric subspace. Tests are performed for Reynolds number 40,000<Re<120,000 and damping 0<ζ<0.16 in the Low Turbulence Free Surface Water Channel of the Marine Renewable Energy Laboratory at the University of Michigan. Extensive testing was made possible by building a virtual damper-spring apparatus, which has been system identified and verified with real damper-spring tests. Thus, damping and stiffness are adjusted by software rather than hardware. From the VIV tests, the optimal damping for energy harnessing was found for velocity 0.40 m/s<U<1.10 m/s using spring stiffness 400 N/m<k<1800 N/m. Thus, the VIVACE converter power envelope is developed. The following experimental observations are made: (1) In the high-lift TrSL3 and TrBL0 flow regimes, high-amplitude, high-damping VIV is maintained. (2) VIV strongly depends on Reynolds. (3) The amplitude ratio (A/D) increases with Reynolds number within the upper branch of the VIV synchronization range. (4) In TrSL3/TrBL0, A/D of 1.78 was achieved for a smooth cylinder routinely in low damping. (5) Power density of 98.2 W/m³ at 1.03 m/s (2 knots) is achieved including space between cylinders.     

Nekton distribution and midwater hypoxia: A seasonal,diel prey refuge?

Hypoxia affects the distribution of pelagic nekton (i.e., fish and large invertebrates) in both marine and freshwater systems. Bottom hypoxia is common, but midwater oxygen minimum layers (OMLs) also develop in marine offshore regions, fjords, and freshwater lakes. Studies of nekton responses to OML in marine ecosystems have primarily occurred in deep, offshore regions with thick, persistent OMLs. Our study examined the response of pelagic nekton to an OML in a shallow temperate fjord, Hood Canal, WA, U.S.A. Using acoustics, we quantified vertical distribution of nekton at two sites (Hoodsport and Duckabush) before (July) and after (September) OML development. Both Hoodsport and Duckabush had strong OML between 10 and 35 m in September, with lower (minimum 0.63 mg L⁻¹) oxygen levels at Hoodsport compared to Duckabush (1.58 mg L⁻¹). The OML did not affect daytime distribution of fish or invertebrates, with both occupying depths >60 m. At night in July, with no OML, invertebrates migrated into waters <20 m and fish dispersed to within 15 m of the surface at both sites. In the presence of the September OML, invertebrates migrated into waters <20 m, but the upper limit of fish vertical distribution stopped at the base of the OML (35 m) at Hoodsport. Fish vertical distribution at Duckabush was less pronounced within and above the OML (10–35 m) than it had been in July. Our results suggest that the OML did not affect invertebrate vertical distribution, but did affect fish vertical migration, and may provide a seasonal, diel prey refuge.