Forest canopy height estimation using ICESat/GLAS data and error factor analysis in Hokkaido,Japan

Spaceborne light detection and ranging (LiDAR) enables us to obtain information about vertical forest structure directly, and it has often been used to measure forest canopy height or above-ground biomass. However, little attention has been given to comparisons of the accuracy of the different estimation methods of canopy height or to the evaluation of the error factors in canopy height estimation. In this study, we tested three methods of estimating canopy height using the Geoscience Laser Altimeter System (GLAS) onboard NASA’s Ice, Cloud, and land Elevation Satellite (ICESat), and evaluated several factors that affected accuracy. Our study areas were Tomakomai and Kushiro, two forested areas on Hokkaido in Japan. The accuracy of the canopy height estimates was verified by ground-based measurements. We also conducted a multivariate analysis using quantification theory type I (multiple-regression analysis of qualitative data) and identified the observation conditions that had a large influence on estimation accuracy. The method using the digital elevation model was the most accurate, with a root-mean-square error (RMSE) of 3.2 m. However, GLAS data with a low signal-to-noise ratio (⩽10.0) and that taken from September to October 2009 had to be excluded from the analysis because the estimation accuracy of canopy height was remarkably low. After these data were excluded, the multivariate analysis showed that surface slope had the greatest effect on estimation accuracy, and the accuracy dropped the most in steeply sloped areas. We developed a second model with two equations to estimate canopy height depending on the surface slope, which improved estimation accuracy (RMSE = 2.8 m). These results should prove useful and provide practical suggestions for estimating forest canopy height using spaceborne LiDAR.     

Scaling estimates of vegetation structure in Amazonian tropical forests using multi-angle MODIS observations

Detailed knowledge of vegetation structure is required for accurate modelling of terrestrial ecosystems, but direct measurements of the three dimensional distribution of canopy elements, for instance from LiDAR, are not widely available. We investigate the potential for modelling vegetation roughness, a key parameter for climatological models, from directional scattering of visible and near-infrared (NIR) reflectance acquired from NASA’s Moderate Resolution Imaging Spectroradiometer (MODIS). We compare our estimates across different tropical forest types to independent measures obtained from: (1) airborne laser scanning (ALS), (2) spaceborne Geoscience Laser Altimeter System (GLAS)/ICESat, and (3) the spaceborne SeaWinds/QSCAT. Our results showed linear correlation between MODIS-derived anisotropy to ALS-derived entropy (r² = 0.54, RMSE = 0.11), even in high biomass regions. Significant relationships were also obtained between MODIS-derived anisotropy and GLAS-derived entropy (0.52 ≤ r² ≤ 0.61; p < 0.05), with similar slopes and offsets found throughout the season, and RMSE between 0.26 and 0.30 (units of entropy). The relationships between the MODIS-derived anisotropy and backscattering measurements (σ⁰) from SeaWinds/QuikSCAT presented an r² of 0.59 and a RMSE of 0.11. We conclude that multi-angular MODIS observations are suitable to extrapolate measures of canopy entropy across different forest types, providing additional estimates of vegetation structure in the Amazon.     

Semi-automated stand delineation in Mediterranean Pinus sylvestris plantations through segmentation of LiDAR data: The influence of pulse density

Traditionally, forest-stand delineation has been assessed based on orthophotography. The application of LiDAR has improved forest management by providing high-spatial-resolution data on the vertical structure of the forest. The aim of this study was to develop and test a semi-automated algorithm for stands delineation in a plantation of Pinus sylvestris L. using LiDAR data. Three specific objectives were evaluated, i) to assess two complementary LiDAR metrics, Assmann dominant height and basal area, for the characterization of the structure of P. sylvestris Mediterranean forests based on object-oriented segmentation, ii) to evaluate the influence of the LiDAR pulse density on forest-stand delineation accuracy, and iii) to investigate the algorithmś effectiveness in the delineation of P. sylvestris stands for map prediction of Assmann dominant height and basal area. Our results show that it is possible to generate accurate P. sylvestris forest-stand segmentations using multiresolution or mean shift segmentation methods, even with low-pulse-density LiDAR − which is an important economic advantage for forest management. However, eCognition multiresolution methods provided better results than the OTB (Orfeo Tool Box) for stand delineation based on dominant height and basal area estimations. Furthermore, the influence of pulse density on the results was not statistically significant in the basal area calculations. However, there was a significant effect of pulse density on Assmann dominant height [F_2,9595 = 5.69, p = 0.003].for low pulse density. We propose that the approach shown here should be considered for stand delineation in other large Pinus plantations in Mediterranean regions with similar characteristics.     

Retrieving aboveground biomass of wetland Phragmites australis (common reed) using a combination of airborne discrete-return LiDAR and hyperspectral data

Wetland biomass is essential for monitoring the stability and productivity of wetland ecosystems. Conventional field methods to measure or estimate wetland biomass are accurate and reliable, but expensive, time consuming and labor intensive. This research explored the potential for estimating wetland reed biomass using a combination of airborne discrete-return Light Detection and Ranging (LiDAR) and hyperspectral data. To derive the optimal predictor variables of reed biomass, a range of LiDAR and hyperspectral metrics at different spatial scales were regressed against the field-observed biomasses. The results showed that the LiDAR-derived H_p99 (99th percentile of the LiDAR height) and hyperspectral-calculated modified soil-adjusted vegetation index (MSAVI) were the best metrics for estimating reed biomass using the single regression model. Although the LiDAR data yielded a higher estimation accuracy compared to the hyperspectral data, the combination of LiDAR and hyperspectral data produced a more accurate prediction model for reed biomass (R² = 0.648, RMSE = 167.546 g/m², RMSE_r = 20.71%) than LiDAR data alone. Thus, combining LiDAR data with hyperspectral data has a great potential for improving the accuracy of aboveground biomass estimation.     

Combined use of LiDAR data and multispectral earth observation imagery for wetland habitat mapping

Although wetlands play a key role in controlling flooding and nonpoint source pollution, sequestering carbon and providing an abundance of ecological services, the inventory and characterization of wetland habitats are most often limited to small areas. This explains why the understanding of their ecological functioning is still insufficient for a reliable functional assessment on areas larger than a few hectares. While LiDAR data and multispectral Earth Observation (EO) images are often used separately to map wetland habitats, their combined use is currently being assessed for different habitat types. The aim of this study is to evaluate the combination of multispectral and multiseasonal imagery and LiDAR data to precisely map the distribution of wetland habitats. The image classification was performed combining an object-based approach and decision-tree modeling. Four multispectral images with high (SPOT-5) and very high spatial resolution (Quickbird, KOMPSAT-2, aerial photographs) were classified separately. Another classification was then applied integrating summer and winter multispectral image data and three layers derived from LiDAR data: vegetation height, microtopography and intensity return. The comparison of classification results shows that some habitats are better identified on the winter image and others on the summer image (overall accuracies = 58.5 and 57.6%). They also point out that classification accuracy is highly improved (overall accuracy = 86.5%) when combining LiDAR data and multispectral images. Moreover, this study highlights the advantage of integrating vegetation height, microtopography and intensity parameters in the classification process. This article demonstrates that information provided by the synergetic use of multispectral images and LiDAR data can help in wetland functional assessment     

Assessing the utility WorldView-2 imagery for tree species mapping in South African subtropical humid forest and the conservation implications: Dukuduku forest patch as case study

Indigenous forest biome in South Africa is highly fragmented into patches of various sizes (most patches < 1 km²). The utilization of timber and non-timber resources by poor rural communities living around protected forest patches produce subtle changes in the forest canopy which can be hardly detected on a timely manner using traditional field surveys. The aims of this study were to assess: (i) the utility of very high resolution (VHR) remote sensing imagery (WorldView-2, 0.5–2 m spatial resolution) for mapping tree species and canopy gaps in one of the protected subtropical coastal forests in South Africa (the Dukuduku forest patch (ca.3200 ha) located in the province of KwaZulu-Natal) and (ii) the implications of the map products to forest conservation. Three dominant canopy tree species namely, Albizia adianthifolia, Strychnos spp. and Acacia spp., and canopy gap types including bushes (grass/shrubby), bare soil and burnt patches were accurately mapped (overall accuracy = 89.3 ± 2.1%) using WorldView-2 image and support vector machine classifier. The maps revealed subtle forest disturbances such as bush encroachment and edge effects resulting from forest fragmentation by roads and a power-line. In two stakeholders’ workshops organised to assess the implications of the map products to conservation, participants generally agreed amongst others implications that the VHR maps provide valuable information that could be used for implementing and monitoring the effects of rehabilitation measures. The use of VHR imagery is recommended for timely inventorying and monitoring of the small and fragile patches of subtropical forests in Southern Africa.     

A novel approach to estimate canopy height using ICESat/GLAS data: A case study in the New Forest National Park,UK

The Geoscience Laser Altimeter System (GLAS) aboard Ice, Cloud and land Elevation Satellite (ICESat) is a spaceborne LiDAR sensor. It is the first LiDAR instrument which can digitize the backscattered waveform and offer near global coverage. Among others, scientific objectives of the mission include precise measurement of vegetation canopy heights. Existing approaches of waveform processing for canopy height estimation suggest Gaussian decomposition of the waveform which has the limitation to properly characterize significant peaks and results in discrepant information. Moreover, in most cases, Digital Terrain Models (DTMs) are required for canopy height estimation. This paper presents a new automated method of GLAS waveform processing for extracting vegetation canopy height in the absence of a DTM. Canopy heights retrieved from GLAS waveforms were validated with field measured heights. The newly proposed method was able to explain 79% of variation in canopy heights with an RMSE of 3.18 m, in the study area. The unexplained variation in canopy heights retrieved from GLAS data can be due to errors introduced by footprint eccentricity, decay of energy between emitted and received signals, uncertainty in the field measurements and limited number of sampled footprints.Results achieved with the newly proposed method were encouraging and demonstrated its potential of processing full-waveform LiDAR data for estimating forest canopy height. The study also had implications on future full-waveform spaceborne missions and their utility in vegetation studies.     

Canopy foliar nitrogen retrieved from airborne hyperspectral imagery by correcting for canopy structure effects

A statistical relationship between canopy mass-based foliar nitrogen concentration (%N) and canopy bidirectional reflectance factor (BRF) has been repeatedly demonstrated. However, the interaction between leaf properties and canopy structure confounds the estimation of foliar nitrogen. The canopy scattering coefficient (the ratio of BRF and the directional area scattering factor, DASF) has recently been suggested for estimating %N as it suppresses the canopy structural effects on BRF. However, estimation of %N using the scattering coefficient has not yet been investigated for longer spectral wavelengths (>855 nm). We retrieved the canopy scattering coefficient for wavelengths between 400 and 2500 nm from airborne hyperspectral imagery, and then applied a continuous wavelet analysis (CWA) to the scattering coefficient in order to estimate %N. Predictions of %N were also made using partial least squares regression (PLSR). We found that %N can be accurately retrieved using CWA (R² = 0.65, RMSE = 0.33) when four wavelet features are combined, with CWA yielding a more accurate estimation than PLSR (R² = 0.47, RMSE = 0.41). We also found that the wavelet features most sensitive to %N variation in the visible region relate to chlorophyll absorption, while wavelet features in the shortwave infrared regions relate to protein and dry matter absorption. Our results confirm that %N can be retrieved using the scattering coefficient after correcting for canopy structural effect. With the aid of high-fidelity airborne or upcoming space-borne hyperspectral imagery, large-scale foliar nitrogen maps can be generated to improve the modeling of ecosystem processes as well as ecosystem-climate feedbacks.     

Modelling the standing timber volume of Baden-Württemberg—A large-scale approach using a fusion of Landsat,airborne LiDAR and National Forest Inventory data

Remote sensing-based timber volume estimation is key for modelling the regional potential, accessibility and price of lignocellulosic raw material for an emerging bioeconomy. We used a unique wall-to-wall airborne LiDAR dataset and Landsat 7 satellite images in combination with terrestrial inventory data derived from the National Forest Inventory (NFI), and applied generalized additive models (GAM) to estimate spatially explicit timber distribution and volume in forested areas. Since the NFI data showed an underlying structure regarding size and ownership, we additionally constructed a socio-economic predictor to enhance the accuracy of the analysis. Furthermore, we balanced the training dataset with a bootstrap method to achieve unbiased regression weights for interpolating timber volume. Finally, we compared and discussed the model performance of the original approach (r² = 0.56, NRMSE = 9.65%), the approach with balanced training data (r² = 0.69, NRMSE = 12.43%) and the final approach with balanced training data and the additional socio-economic predictor (r² = 0.72, NRMSE = 12.17%). The results demonstrate the usefulness of remote sensing techniques for mapping timber volume for a future lignocellulose-based bioeconomy.     

Plant phenolics and absorption features in vegetation reflectance spectra near 1.66 μm

Past laboratory and field studies have quantified phenolic substances in vegetative matter from reflectance measurements for understanding plant response to herbivores and insect predation. Past remote sensing studies on phenolics have evaluated crop quality and vegetation patterns caused by bedrock geology and associated variations in soil geochemistry. We examined spectra of pure phenolic compounds, common plant biochemical constituents, dry leaves, fresh leaves, and plant canopies for direct evidence of absorption features attributable to plant phenolics. Using spectral feature analysis with continuum removal, we observed that a narrow feature at 1.66 μm is persistent in spectra of manzanita, sumac, red maple, sugar maple, tea, and other species. This feature was consistent with absorption caused by aromatic CH bonds in the chemical structure of phenolic compounds and non-hydroxylated aromatics. Because of overlapping absorption by water, the feature was weaker in fresh leaf and canopy spectra compared to dry leaf measurements. Simple linear regressions of feature depth and feature area with polyphenol concentration in tea resulted in high correlations and low errors (% phenol by dry weight) at the dry leaf (r² = 0.95, RMSE = 1.0%, n = 56), fresh leaf (r² = 0.79, RMSE = 2.1%, n = 56), and canopy (r² = 0.78, RMSE = 1.0%, n = 13) levels of measurement. Spectra of leaves, needles, and canopies of big sagebrush and evergreens exhibited a weak absorption feature centered near 1.63 μm, short ward of the phenolic compounds, possibly consistent with terpenes. This study demonstrates that subtle variation in vegetation spectra in the shortwave infrared can directly indicate biochemical constituents and be used to quantify them. Phenolics are of lesser abundance compared to the major plant constituents but, nonetheless, have important plant functions and ecological significance. Additional research is needed to advance our understanding of the spectral influences of plant phenolics and terpenes relative to dominant leaf biochemistry (water, chlorophyll, protein/nitrogen, cellulose, and lignin).     

An accurate and computationally efficient algorithm for ground peak identification in large footprint waveform LiDAR data

Large footprint waveform LiDAR sensors have been widely used for numerous airborne studies. Ground peak identification in a large footprint waveform is a significant bottleneck in exploring full usage of the waveform datasets. In the current study, an accurate and computationally efficient algorithm was developed for ground peak identification, called Filtering and Clustering Algorithm (FICA). The method was evaluated on Land, Vegetation, and Ice Sensor (LVIS) waveform datasets acquired over Central NY. FICA incorporates a set of multi-scale second derivative filters and a k-means clustering algorithm in order to avoid detecting false ground peaks. FICA was tested in five different land cover types (deciduous trees, coniferous trees, shrub, grass and developed area) and showed more accurate results when compared to existing algorithms. More specifically, compared with Gaussian decomposition, the RMSE ground peak identification by FICA was 2.82 m (5.29 m for GD) in deciduous plots, 3.25 m (4.57 m for GD) in coniferous plots, 2.63 m (2.83 m for GD) in shrub plots, 0.82 m (0.93 m for GD) in grass plots, and 0.70 m (0.51 m for GD) in plots of developed areas. FICA performance was also relatively consistent under various slope and canopy coverage (CC) conditions. In addition, FICA showed better computational efficiency compared to existing methods. FICA’s major computational and accuracy advantage is a result of the adopted multi-scale signal processing procedures that concentrate on local portions of the signal as opposed to the Gaussian decomposition that uses a curve-fitting strategy applied in the entire signal. The FICA algorithm is a good candidate for large-scale implementation on future space-borne waveform LiDAR sensors.     

Spectral resampling based on user-defined inter-band correlation filter: C3 and C4 grass species classification

In this paper, a user-defined inter-band correlation filter function was used to resample hyperspectral data and thereby mitigate the problem of multicollinearity in classification analysis. The proposed resampling technique convolves the spectral dependence information between a chosen band-centre and its shorter and longer wavelength neighbours. Weighting threshold of inter-band correlation (WTC, Pearson's r) was calculated, whereby r = 1 at the band-centre. Various WTC (r = 0.99, r = 0.95 and r = 0.90) were assessed, and bands with coefficients beyond a chosen threshold were assigned r = 0. The resultant data were used in the random forest analysis to classify in situ C₃ and C₄ grass canopy reflectance. The respective WTC datasets yielded improved classification accuracies (kappa = 0.82, 0.79 and 0.76) with less correlated wavebands when compared to resampled Hyperion bands (kappa = 0.76). Overall, the results obtained from this study suggested that resampling of hyperspectral data should account for the spectral dependence information to improve overall classification accuracy as well as reducing the problem of multicollinearity.     

Applications of ALOS PALSAR for monitoring biophysical parameters of a degraded black mangrove (Avicennia germinans) forest

Within the last few decades mangrove forests worldwide have been experiencing high annual rates of loss and many of those that remain have undergone considerable degradation. To understand the condition of these forests, various optical remote sensing platforms have been used to map and monitor these wetlands, including the use of these data for biophysical parameter mapping. For many mangrove forests a reliable source of optical imagery is not possible given their location in quasi-permanent cloud cover or smoke covered regions. In such cases it is recommended that Synthetic Aperture Radar (SAR) be considered. The purpose of this investigation was to examine the relationships between various ALOS-PALSAR modes, acquired from eight images, and mangrove biophysical parameter data collected from a black mangrove (Avicennia germinans) dominated forest that has experienced considerable degradation. In total, structural data were collected from 61 plots representing the four common stand types found in this degraded forest of the Mexican Pacific: tall healthy mangrove (n = 17), dwarf healthy mangrove (n = 15), poor condition mangrove (n = 13), and predominantly dead mangrove (n = 16).Based on backscatter coefficients, significant negative correlation coefficients were observed between filtered single polarization ALOS PALSAR (6.25 m) HH backscatter and Leaf Area Index (LAI). When the dead stands were excluded (n = 45) the strength of these relationships increased. Moreover, significant negative correlation coefficients were observed with stand height, Basal Area (BA) and to a lesser degree with stem density and mean DBH. With the coarser spatial resolution dual-polarization and quad polarization data (12.5 m) only a few, and weaker, correlation coefficients were calculated between the mangrove parameters and the filtered HH backscatter. However, significant negative values were once again calculated for the HH when the 16 dead mangrove stands were removed from the sample. Conversely, strong positive significant correlation coefficients were calculated between the cross-polarization HV backscatter and LAI when the dead mangrove stands were considered. Although fewer in comparison to the HH correlations, a number of VV backscatter based relationships with mangrove parameters were observed from the quad polarization mode and, to a lesser extent, with the one single VV polarization data.In addition to backscatter coefficients, stepwise multiple regression models of the mangrove biophysical parameter data were developed based on texture parameters derived from the grey level co-occurrence matrix (GLCM) of the ALOS data. A similar pattern to the backscatter relationships was observed for models based on the single polarization unfiltered data, with fairly strong coefficients of determination calculated for LAI and stem height when the dead stands were excluded. In contrast, similar coefficients of determination with biophysical parameters were observed for the dual and quad polarization multiple regression models when the dead stands were both included and excluded from the analyses. An estimated mangrove LAI map of the study area, derived from a multiple regression model of the quad polarization texture parameters, showed comparable spatial patterns of degradation to a map derived from higher spatial resolution optical satellite data.     

Direct georeferencing of airborne LiDAR data in national coordinates

The topographic mapping products of airborne light detection and ranging (LiDAR) are usually required in the national coordinates (i.e., using the national datum and a conformal map projection). Since the spatial scale of the national datum is usually slightly different from the World Geodetic System 1984 (WGS 84) datum, and the map projection frame is not Cartesian, the georeferencing process in the national coordinates is inevitably affected by various geometric distortions. In this paper, all the major direct georeferencing distortion factors in the national coordinates, including one 3D scale distortion (the datum scale factor distortion), one height distortion (the earth curvature distortion), two length distortions (the horizontal-to-geodesic length distortion and the geodesic-to-projected length distortion), and three angle distortions (the skew-normal distortion, the normal-section-to-geodesic distortion, and the arc-to-chord distortion) are identified and demonstrated in detail; and high-precision map projection correction formulas are provided for the direct georeferencing of the airborne LiDAR data. Given the high computational complexity of the high-precision map projection correction approach, some more approximate correction formulas are also derived for the practical calculations. The simulated experiments show that the magnitude of the datum scale distortion can reach several centimeters to decimeters for the low (e.g., 500 m) and high (e.g., 8000 m) flying heights, and therefore it always needs to be corrected. Our proposed practical map projection correction approach has better accuracy than Legat’s approach,¹ but it needs 25% more computational cost. As the correction accuracy of Legat’s approach can meet the requirements of airborne LiDAR data with low and medium flight height (up to 3000 m above ground), our practical correction approach is more suitable to the high-altitude aerial imagery. The residuals of our proposed high-precision map projection correction approach are trivial even for the high flight height of 8000 m. It can be used for the theoretical applications such as the accurate evaluation of different GPS/INS attitude transformation methods to the national coordinates.     

Characterization of the horizontal structure of the tropical forest canopy using object-based LiDAR and multispectral image analysis

This article's goal is to explore the benefits of using Digital Surface Model (DSM) and Digital Terrain Model (DTM) derived from LiDAR acquisitions for characterizing the horizontal structure of different facies in forested areas (primary forests vs. secondary forests) within the framework of an object-oriented classification. The area under study is the island of Mayotte in the western Indian Ocean. The LiDAR data were the data originally acquired by an airborne small-footprint discrete-return LiDAR for the “Litto3D” coastline mapping project. They were used to create a Digital Elevation Model (DEM) at a spatial resolution of 1 m and a Digital Canopy Model (DCM) using median filtering. The use of two successive segmentations at different scales allowed us to adjust the segmentation parameters to the local structure of the landscape and of the cover. Working in object-oriented mode with LiDAR allowed us to discriminate six vegetation classes based on canopy height and horizontal heterogeneity. This heterogeneity was assessed using a texture index calculated from the height-transition co-occurrence matrix. Overall accuracy exceeds 90%. The resulting product is the first vegetation map of Mayotte which emphasizes the structure over the composition.     

Sub-footprint analysis to uncover tree height variation using ICESat/GLAS

Detailed forest height data are an indispensable prerequisite for many forestry and earth science applications. Existing research of using Geoscience Laser Altimeter System (GLAS) data mainly focuses on deriving average or maximum tree heights within a GLAS footprint, i.e. an ellipse with a diameter of 65 m. However, in most forests, it is likely that the tree heights within such ellipse are heterogeneous. Therefore, it is desired to uncover detailed tree height variation within a GLAS footprint. To the best of our knowledge, no such methods have been reported as of now. In this study, we aim to characterize tree heights’ variation within a GLAS footprint as different layers, each of which corresponds to trees with similar heights. As such, we developed a new method that embraces two steps: first, a refined Levenberg–Marquardt (LM) algorithm is proposed to decompose raw GLAS waveform into multiple Gaussian signals, within which it is hypothesized that each vegetation signal corresponds to a particular tree height layer. Second, for each layer, three parameters were first defined: Canopy Top Height (CTH), Crown Length (CL), and Cover Proportion (CP). Then we extracted the three parameters from each Gaussian signal through a defined model. In order to test our developed method, we set up a study site in Ejina, China where the dominant specie is Populus euphratica. Both simulated and field tree height data were adopted. With regard to the simulation data, results presented a very high agreement for the three predefined parameters between our results and simulation data. When our methods were applied to the field data, the respective R² become 0.78 (CTH), CL (R² = 0.76), CP (R² = 0.74). Overall, our studies revealed that large footprint GLAS waveform data have the potentials for obtaining detailed forest height variation.     

Vegetation chlorophyll estimates in the Amazon from multi-angle MODIS observations and canopy reflectance model

As a preparatory study for future hyperspectral missions that can measure canopy chemistry, we introduce a novel approach to investigate whether multi-angle Moderate Resolution Imaging Spectroradiometer (MODIS) data can be used to generate a preliminary database with long-term estimates of chlorophyll. MODIS monthly chlorophyll estimates between 2000 and 2015, derived from a fully coupled canopy reflectance model (ProSAIL), were inspected for consistency with eddy covariance fluxes, tower-based hyperspectral images and chlorophyll measurements. MODIS chlorophyll estimates from the inverse model showed strong seasonal variations across two flux-tower sites in central and eastern Amazon. Marked increases in chlorophyll concentrations were observed during the early dry season. Remotely sensed chlorophyll concentrations were correlated to field measurements (r² = 0.73 and r² = 0.98) but the data deviated from the 1:1 line with root mean square errors (RMSE) ranging from 0.355 μg cm⁻² (Tapajós tower) to 0.470 μg cm⁻² (Manaus tower). The chlorophyll estimates were consistent with flux tower measurements of photosynthetically active radiation (PAR) and net ecosystem productivity (NEP). We also applied ProSAIL to mono-angle hyperspectral observations from a camera installed on a tower to scale modeled chlorophyll pigments to MODIS observations (r² = 0.73). Chlorophyll pigment concentrations (Chl_A+B) were correlated to changes in the amount of young and mature leaf area per month (0.59 ≤  r² ≤  0.64). Increases in MODIS observed Chl_A+B were preceded by increased PAR during the dry season (0.61 ≤ r² ≤  0.62) and followed by changes in net carbon uptake. We conclude that, at these two sites, changes in LAI, coupled with changes in leaf chlorophyll, are comparable with seasonality of plant productivity. Our results allowed the preliminary development of a 15-year time series of chlorophyll estimates over the Amazon to support canopy chemistry studies using future hyperspectral sensors.     

Aboveground total and green biomass of dryland shrub derived from terrestrial laser scanning

Sagebrush (Artemisia tridentata), a dominant shrub species in the sagebrush-steppe ecosystem of the western US, is declining from its historical distribution due to feedbacks between climate and land use change, fire, and invasive species. Quantifying aboveground biomass of sagebrush is important for assessing carbon storage and monitoring the presence and distribution of this rapidly changing dryland ecosystem. Models of shrub canopy volume, derived from terrestrial laser scanning (TLS) point clouds, were used to accurately estimate aboveground sagebrush biomass. Ninety-one sagebrush plants were scanned and sampled across three study sites in the Great Basin, USA. Half of the plants were scanned and destructively sampled in the spring (n = 46), while the other half were scanned again in the fall before destructive sampling (n = 45). The latter set of sagebrush plants was scanned during both spring and fall to further test the ability of the TLS to quantify seasonal changes in green biomass. Sagebrush biomass was estimated using both a voxel and a 3-D convex hull approach applied to TLS point cloud data. The 3-D convex hull model estimated total and green biomass more accurately (R² = 0.92 and R² = 0.83, respectively) than the voxel-based method (R² = 0.86 and R² = 0.73, respectively). Seasonal differences in TLS-predicted green biomass were detected at two of the sites (p < 0.001 and p = 0.029), elucidating the amount of ephemeral leaf loss in the face of summer drought. The methods presented herein are directly transferable to other dryland shrubs, and implementation of the convex hull model with similar sagebrush species is straightforward.     

A visible band index for remote sensing leaf chlorophyll content at the canopy scale

Leaf chlorophyll content is an important variable for agricultural remote sensing because of its close relationship to leaf nitrogen content. The triangular greenness index (TGI) was developed based on the area of a triangle surrounding the spectral features of chlorophyll with points at (670 nm, R₆₇₀), (550 nm, R₅₅₀), and (480 nm, R₄₈₀), where R_λ is the spectral reflectance at wavelengths of 670, 550 and 480, respectively. The equation is TGI = −0.5[(670 − 480)(R₆₇₀ − R₅₅₀) − (670 − 550)(R₆₇₀ − R₄₈₀)]. In 1999, investigators funded by NASA's Earth Observations Commercialization and Applications Program collaborated on a nitrogen fertilization experiment with irrigated maize in Nebraska. Airborne Visible/Infrared Imaging Spectrometer (AVIRIS) data and Landsat 5 Thematic Mapper (TM) data were acquired along with leaf chlorophyll meter and other data on three dates in July during late vegetative growth and early reproductive growth. TGI was consistently correlated with plot-averaged chlorophyll-meter values at the spectral resolutions of AVIRIS, Landsat TM, and digital cameras. Simulations using the Scattering by Arbitrarily Inclined Leaves (SAIL) canopy model indicate an interaction among TGI, leaf area index (LAI) and soil type at low crop LAI, whereas at high LAI and canopy closure, TGI was only affected by leaf chlorophyll content. Therefore, TGI may be the best spectral index to detect crop nitrogen requirements with low-cost digital cameras mounted on low-altitude airborne platforms.     

Comparative analysis of different retrieval methods for mapping grassland leaf area index using airborne imaging spectroscopy

Fine scale maps of vegetation biophysical variables are useful status indicators for monitoring and managing national parks and endangered habitats. Here, we assess in a comparative way four different retrieval methods for estimating leaf area index (LAI) in grassland: two radiative transfer model (RTM) inversion methods (one based on look-up-tables (LUT) and one based on predictive equations) and two statistical modelling methods (one partly, the other entirely based on in situ data). For prediction, spectral data were used that had been acquired over Majella National Park in Italy by the airborne hyperspectral HyMap instrument. To assess the performance of the four investigated models, the normalized root mean squared error (nRMSE) and coefficient of determination (R²) between estimates and in situ LAI measurements are reported (n = 41). Using a jackknife approach, we also quantified the accuracy and robustness of empirical models as a function of the size of the available calibration data set. The results of the study demonstrate that the LUT-based RTM inversion yields higher accuracies for LAI estimation (R² = 0.91, nRMSE = 0.18) as compared to RTM inversions based on predictive equations (R² = 0.79, nRMSE = 0.38). The two statistical methods yield accuracies similar to the LUT method. However, as expected, the accuracy and robustness of the statistical models decrease when the size of the calibration database is reduced to fewer samples. The results of this study are of interest for the remote sensing community developing improved inversion schemes for spaceborne hyperspectral sensors applicable to different vegetation types. The examples provided in this paper may also serve as illustrations for the drawbacks and advantages of physical and empirical models.