Sediment mobility due to currents and waves in the Torres Strait–Gulf of Papua region

The MECO hydrodynamic model (MECO Technical Report No. OMR-118/120, CSIRO Marine Research, 1998) was adapted for the Torres Strait–Gulf of Papua region at 0.05° resolution. Validation of the hydrodynamic model was carried out against observed current meter data and calculated tidal sea levels. Dispersal pathways of sediments derived from the Fly River, and from a resuspension event along the northern Great Barrier Reef were investigated using an Eulerian approach. Sediment input into Torres Strait is found to be greater during the Trade season by approximately 10%. Wave data were also obtained, and together with hydrodynamic model output, sediment mobility due to currents, waves and wave–current interactions was considered for both the Trade and Monsoon seasons. Sediment mobility in the Gulf of Papua is dominated by wave motion, whereas Torres Strait is a mixed environment of waves and tidal currents.     

Harvest patterns and effort dynamics of indigenous and non-indigenous commercial sectors of the eastern Torres Strait reef line fishery

The reef line fishery (RLF) in eastern Torres Strait (ETS) is unique in that it has both a commercial indigenous sector and a commercial non-indigenous sector. Recently, concerns have been expressed by all stakeholders about the long-term sustainability of the fishery. These concerns have been exacerbated by the lack of detailed catch and effort information from both sectors, which has precluded any formal assessment of the fishery. In this paper, we characterise the harvest patterns and effort dynamics of the indigenous and non-indigenous commercial sectors of the ETS RLF using a range of data sources including commercial logbooks, community freezer records, voluntary logbooks and observer surveys. We demonstrate that bycatch is a significant component of the catch for both sectors and identify substantial differences in harvest patterns and effort dynamics between the sectors. Differences between sectors were observed in species composition and spatial and temporal patterns in catch, effort and catch per unit effort. These results highlight the inherent variation in catch and effort dynamics between the two commercial sectors of the ETS RLF and provide valuable information for the development of future assessments and appropriate management strategies for the fishery. The more reliable estimates of harvest patterns and effort dynamics for both sectors obtained from observer surveys will also assist in resolving issues relating to allocation of reef fish resources in Torres Strait.     

Spatial patterns of sub-tidal seagrasses and their tissue nutrients in the Torres Strait,northern Australia: Implications for management

The distribution and nutritional profiles of sub-tidal seagrasses from the Torres Strait were surveyed and mapped across an area of 31,000 km². Benthic sediment composition, water depth, seagrass species type and nutrients were sampled at 168 points selected in a stratified representative pattern. Eleven species of seagrass were present at 56 (33.3%) of the sample points. Halophila spinulosa, Halophila ovalis, Cymodocea serrulata and Syringodium isoetifolium were the most common species and these were nutrient profiled. Sub-tidal seagrass distribution (and associated seagrass nutrient concentrations) was generally confined to northern-central and south-western regions of the survey area (<longitude 142.60), where mean water depth was relatively shallow (approximately 13 m below MSL) and where sediments were comprised primarily muddy sand to gravelly sand. Seagrass nitrogen and starch content, the most important nutrients for marine herbivores, were significantly correlated with species and with the plant component (above or below ground). For all seagrass species, the above-ground component (shoots and leaves) possessed greater nitrogen concentrations than the below-ground component (roots and rhizomes), which possessed greater starch concentrations. S. isoetifolium had the highest total nitrogen concentrations (1.40±0.05% DW). However, it also had higher fibre concentrations (38.2±0.68% DW) relative to the other four species. H. ovalis possessed the highest starch concentrations (2.76±0.12% DW) and highest digestibility (83.24±0.66% DW) as well as the lowest fibre (27.2±0.66% DW). The high relative abundance (found at 55% of the sites that had seagrass) and nutrient quality characteristics of H. ovalis make it an important source of energy to marine herbivores that forage sub-tidally in the Torres Strait. There were two regions in Torres Strait (north-central and south-western) where sub-tidal seagrass meadows were prevalent and of relatively higher nutritional value. This spatial and nutritional information can be used by local agencies to manage and to protect the ecological, economic and cultural values of the sub-tidal seagrass ecosystems and associated fisheries of the Torres Strait.     

Characterization and composition of heavy metals and persistent organic pollutants in water and estuarine sediments from Gao-ping River, Taiwan

The objective of this study was to determine the concentrations and possible sources of heavy metals and persistent organic pollutants (POPs) in water and estuarine sediments from Gao-ping River in order to evaluate the environmental quality of aquatic system in southern Taiwan. High concentrations of heavy metals including Cr, Zn, Ni, Cu and As, ranging from 10.7 to 180 mg/kg-dry weight (dw), were detected in sediments from Gao-ping River. When normalized to the principal component analysis (PCA), swinery and electroplating wastewaters were found to be the most important pollution sources for heavy metals. Of various organochlorine pesticide (OCP) residues detected, aldrin and total-hexachlorocyclohexane (HCH) were frequently found in sediments. The total concentrations of OCPs were in the range 0.47-47.4 ng/g-dw. Also, the total-HCH, total-cyclodiene, and total-dichlorodiphenyltrichloroethane (DDT) were in the range 0.37-36.3, 0.21-19.0, and 0.44-1.88 ng/g-dw, respectively. The polychlorinated biphenyl (PCB) concentrations in sediments from Gao-ping River ranged between 0.37 and 5.89 ng/g-dw. The PCB concentrations are positively correlated to the organic contents of the sediment particles. alpha-HCH was found to be the dominant compound of HCH in the sediments, showing that long-range transport may be the possible source for the contamination of HCH in sediments from Gao-ping River. In summary, trace amounts of POPs in estuarine sediments from Gao-ping River were detected, showing that there still exist a wide variety of POP residues in the river sediments in Taiwan. These POP residues may be mainly from long-range transport and weathered agricultural soils, while heavy metal contamination is primarily from the swinery and industrial wastewaters.     

Evaluating ecosystem-based management options: Effects of trawling in Torres Strait,Australia

A suite of management options for a prawn trawl fishery in Torres Strait, Australia was assessed for impacts on the benthic fauna using a dynamic management strategy evaluation approach. The specification of the management options was gained through consultation with stakeholders. Data for the model was drawn from several sources: the fleet data from fishery logbooks and satellite vessel monitoring systems, benthic depletion rates from trawl-down experiments, benthic recovery rates from post-experiment recovery monitoring studies, and benthic distribution from large-scale benthic surveys. Although there were large uncertainties in the resulting indicators, robust measures relevant to management were obtained by taking ratios relative to the status quo. The management control with the biggest effect was total effort; reducing trawl effort always led to increases in benthic faunal density of up to 10%. Spatial closures had a smaller benefit of up to 2%. The effect of closing a set of buffer zones around reefs to trawling was indistinguishable from the status quo option. Closing a larger area, however, was largely beneficial especially for sea cucumbers. When the spatial distributions of fauna prior to fishing were accounted for, fauna with distributions positively correlated with effort improved relative to those negatively correlated. The reduction in prawn catch under effort reduction scenarios could be ameliorated by introducing temporal closures over the full-moon period.     

Organochlorine, Heavy Metal and Polyaromatic Hydrocarbon Pollutant Concentrations in the Great Barrier Reef (Australia) Environment: a Review

Past monitoring of heavy metals, organochlorine compounds and polyaromatic hydrocarbons (PAHs) has found that pollutant concentrations are generally low within the Great Barrier Reef Marine Park and World Heritage Area and are indicative of a relatively unpolluted environment. The exceptions are sites that are adjacent to human activity such as ports and harbours, urban centres and areas adjacent to intensive agricultural activity. These sites have elevated concentrations of a range of pollutants. Concentrations of dioxins have also been found to be elevated in marine park sediments. Elevated pollutant concentrations are generally the consequence of effluent discharge, urban stormwater, and agricultural and industrial runoff. However, a majority of Great Barrier Reef pollutant data are now dated, and contemporary information is required concerning the distribution and impact of pollutants in the Queensland marine environment. The utility of specialized monitoring tools such as biomarkers for tropical marine environments urgently needs to be examined. With this information, appropriate risk assessment and monitoring can be implemented and effective management strategies developed to protect tropical marine ecosystems including the Great Barrier Reef.     

Population biology of coral trout species in eastern Torres Strait: Implications for fishery management

Coral trout (Plectropomus spp.) are the main target species for commercial fishers in the eastern Torres Strait Reef Line Fishery (ETS RLF). The four species of coral trout known to occur in Torres Strait: Plectropomus leopardus, Plectropomus maculatus, Plectropomus areolatus and Plectropomus laevis are currently managed as a single species in Torres Strait, as there is no species-specific biological information available for the region which could be used to assess whether species differ in their response to fishing pressure. The aim of our study was to determine whether it is appropriate (biologically) to manage coral trout in the ETS RLF as a single species group or whether different management arrangements are required for some species. We used catch data and biological data from samples collected by commercial fishers to examine the distribution within Torres Strait and estimate a range of biological parameters for P. leopardus, P. maculatus and P. areolatus. Insufficient P. laevis samples were collected to reliably examine this species. Results indicated that the population biology, particularly the reproductive biology, of P. areolatus was substantially different to both P. leopardus and P. maculatus. Although it is difficult to predict the response to fishing, P. areolatus may be more vulnerable to fishing than P. leopardus and P. maculatus, due to the larger size at sex change observed for this species and the very low proportion of males protected by the current minimum size limit. Therefore, while the common management arrangements for P. leopardus and P. maculatus appear to be adequate for these species, separate management arrangements are needed for the sustainable harvest of P. areolatus populations in the ETS. Specifically, we recommend the introduction of a maximum size limit for P. areolatus, in addition to the current minimum size limit, which may allow a proportion of males some protection from fishing.     

Productivity,carbon assimilation and intra-annual change in tropical reef platform seagrass communities of the Torres Strait,north-eastern Australia

Detailed data on seagrass distribution, abundance, growth rates and community structure information were collected at Orman Reefs in March 2004 to estimate the above-ground productivity and carbon assimilated by seagrass meadows. Seagrass meadows were re-examined in November 2004 for comparison at the seasonal extremes of seagrass abundance. Ten seagrass species were identified in the meadows on Orman Reefs. Extensive seagrass coverage was found in March (18,700 ha) and November (21,600 ha), with seagrass covering the majority of the intertidal reef-top areas and a large proportion of the subtidal areas examined. There were marked differences in seagrass above-ground biomass, distribution and species composition between the two surveys. Major changes between March and November included a substantial decline in biomass for intertidal meadows and an expansion in area of subtidal meadows. Changes were most likely a result of greater tidal exposure of intertidal meadows prior to November leading to desiccation and temperature-related stress.     

Composition and distribution of seabed and suspended sediments in north and central Torres Strait,Australia

Widespread seagrass dieback in central Torres Strait, Australia has been anecdotally linked to the delivery of vast quantities of terrigenous sediments from New Guinea. The composition and distribution, and sedimentological and geochemical properties, of seabed and suspended sediments in north and central Torres Strait have been determined to investigate this issue. In northern Torres Strait, next to Saibai Island, seabed sediments comprise poorly sorted, muddy, mixed calcareous–siliciclastic sand. Seabed sediments in this region are dominated by aluminosilicate (terrigenous) phases. In central Torres Strait, next to Turnagain Island, seabed and suspended sediments comprise moderately sorted coarse to medium carbonate sand. Seabed sediments in this region are dominated by carbonate and magnesium (marine) phases. Mean Cu/Al ratios for seabed sediments next to Saibai Island are 0.01, and are similar to those found in New Guinea south coastal sediments by previous workers. Mean Cu/Al ratios for seabed sediments next to Turnagain Island are 0.02, indicating an enrichment of Cu in central Torres Strait. This enrichment comes from an exogenous biogenic source, principally from foraminifers and molluscs. We could not uniquely trace terrigenous sediments from New Guinea to Turnagain Island in central Torres Strait. If sediments are a factor in the widespread seagrass dieback in central Torres Strait, then our data suggest these are marine-derived sediments sourced from resuspension and advection from the immediate shelf areas and not terrigenous sediments dispersed from New Guinea rivers. This finding is consistent with outputs from recently developed regional hydrodynamic and sediment transport models.     

Metal concentrations, fluxes, inventories and chronologies in sediments from Sepetiba and Ribeira Bays: A comparative study

Three sediment cores were sampled at Sepetiba Bay and four cores at Ribeira Bay, Rio de Janeiro State, Brazil. Sediment accumulation rates and chronologies were obtained from ²¹⁰Pb activity-depth profiles. Sediment accumulation rates in Ribera Bay ranged from 1.2 mm y⁻¹ in the inner bay to 2.6 mm y⁻¹ close to its entrance. In Sepetiba Bay two sediment accumulation rates were observed: a lower rate of 0.35 cm y⁻¹ before the 1960s and 0.76 cm y⁻¹ since then. The cause of this change is due to the construction of the Santa Cecília impoundment (1955) that brings water from the Paraíba do Sul Basin into the Guandu River, which increased its flow from the original 20 m³ s⁻¹ to 160 m³ s⁻¹. Concentration of 44 elements was obtained by ICP-MS after total dissolution of samples from two selected cores. The relative differences between the concentrations of crustal elements, such as Al, Fe and Ti are only about 20% (p < 0.05). Cd and Zn are 15 and four times larger in Sepetiba Bay than in Ribeira Bay, respectively. Other major and minor elements show lower statistically significant differences. The enrichment factors and metal inventories show that Sepetiba Bay can be considered polluted with Bi, Cd, Cr, Cu, Sb and Zn. Particularly, Cd and Zn present concentrations three and four times higher than the Brazilian existing limits.     

Natural and Enhanced Concentrations of Trace Metals in Sediments of Cleveland Bay, Great Barrier Reef Lagoon, Australia

Natural variation in concentrations of Cd, Co, Cu, Ni, Pb, and Zn in sediments of Cleveland Bay can be modelled by linear regression by using the concentration of Al recovered by strong acid digestion as an independent variable. Samples that exceed the upper 95% prediction interval of regression models are classified as enhanced. Enhancement of trace metals occurs in the intertidal zone and near-shore sediments of western Cleveland Bay, in sites that are characterized by high accumulation rates of fine grained terrigenous sediment. There is a strong positive relationship between increasing enhancement of Cu and Pb and the recovery of these metals by weak HCl digestion, which suggests that for these metals the modelled enhancement is environmentally meaningful. In contrast, at least 60%, and generally greater than 80% of Cd is recovered by weak HCl digestion irrespective of modelled enhancement, and suggests that the statistically modelled enhancement of Cd may be more meaningful than weak HCl soluble concentrations.     

Bioremediation of petroleum hydrocarbons in anoxic marine sediments: Consequences on the speciation of heavy metals

We investigated the effects of biostimulation and bioagumentation strategies applied to harbor sediments displaying reducing conditions and high concentrations of petroleum hydrocarbons and heavy metals. We compared the microbial efficiency of hydrocarbon removal from sediments maintained for 60 days in anoxic conditions and inoculated with acetate, sulfate-reducing bacterial strains and acetate and sulfate-reducing bacteria. All treatments determined a significant increase in the microbial growth and significant decreases of hydrocarbon contents and of redox potential values. The addition of sulfate-reducing bacterial strains to the sediment was the most efficient treatment for the hydrocarbon removal. In all experiments, significant changes of the heavy metals’ phase repartition were observed. The results reported here suggest that the biodegradation of petroleum hydrocarbons in anoxic marine sediments may be enhanced by stimulating microbial anaerobic metabolism, but care should be applied to monitor the potential changes in the mobility and bioavailability of heavy metals induced by bio-treatments.     

Spatial patterns of submerged macrophytes and heavy metals in the hypertrophic, contaminated, shallow reservoir Lake Qattieneh/Syria

Our investigation on macrophytes in Lake Qattieneh, a large, shallow reservoir in western Syria, is a first assessment of ecological status of this lake. We studied spatial distribution patterns of aquatic macrophyte vegetation and heavy metal concentrations to determine if they can be used as indicators of point sources of pollution. Industrial and municipal point sources at the lake shore increase nutrient load and contamination by heavy metals. Water analyses revealed high concentrations of some heavy metals at some littoral sites: Ni 88.7 μg L⁻¹, Cr 49.99 μg L⁻¹, Co 14.38 μg L⁻¹, and Cu 11.65 μg L⁻¹. Despite hypertrophic conditions and high heavy metal contamination, we recorded several submerged macrophyte species with heterogeneous spatial distribution patterns. Whereas Potamogeton pectinatus L. dominates in the eastern part of the lake, near industrial point sources, both Myriophyllum spicatum L. and Potamogeton lucens L. form extended patches in the western part of the lake. The shallow, littoral areas near villages are dominated by Ranunculus trichophyllus Chaix in Villars and Ceratophyllum demersum L. The west-east gradient in nutrient and heavy metal concentrations in waters and sediments are reflected by the spatial distribution of submersed species. While the heavy metal concentrations of the water body vary considerably in different seasons, the contents in submersed macrophytes integrate seasonal variations of longer time periods. Spatial distribution and tissue accumulation of littoral macrophyte species reflect the environmental conditions at respective sites such as heavy metal contents in water and sediment.     

Water Quality in the Great Barrier Reef World Heritage Area: Past Perspectives, Current Issues and New Research Directions

Elevated sediment and nutrient concentrations have long been regarded as the pre-eminent water quality threats to the Great Barrier Reef, with the potential risk posed by other pollutants such as heavy metals, persistent chlorohydrocarbons, PCBs and petroleum related compounds considered to be of lesser consequence. However, the management focus on these latter types of pollutants has recently shifted to acknowledge the potential impact posed by diuron, dioxins, dieldrin, and mercury and cadmium concentrations detected in sediments and biota along the Great Barrier Reef and southern Queensland coastline. In general, these threats originate from areas dominated by intensive cropping agriculture and are exacerbated by high rainfall and erosion rates in the wet tropics region of the Queensland coast. Maintenance of long-term monitoring programmes, which utilize innovative data acquisition techniques will enable assessment of change in environmentally relevant pollutant concentrations over time. However, improved land management practices, which include an immediate minimization of vegetation clearance and responsible use of pesticides and fertilizers in Queensland are essential if water quality in the Great Barrier Reef World Heritage Area is to be maintained and protected.     

Spatial distribution of heavy metals in Hong Kong's marine sediments and their human impacts: a GIS-based chemometric approach

A geographic information system (GIS)-based chemometric approach was applied to investigate the spatial distribution patterns of heavy metals in marine sediments and to identify spatial human impacts on global and local scales. Twelve metals (Zn, V, Ni, Mn, Pb, Cu, Cd, Ba, Hg, Fe, Cr and Al) were surveyed twice annually at 59 sites in Hong Kong from 1998 to 2004. Cluster analysis classified the entire coastal area into three areas on a global scale, representing different pollution levels. Backward discriminant analysis, with 84.5% correct assignments, identified Zn, Pb, Cu, Cd, V, and Fe as significant variables affecting spatial variation on a local scale. Enrichment factors indicated that Cu, Cr, and Zn were derived from human impacts while Al, Ba, Mn, V and Fe originated from rock weathering. Principal component analysis further subdivided human impacts and their affected areas in each area, explaining 87%, 84% and 87% of the total variances, respectively. The primary anthropogenic sources in the three areas were (i) anti-fouling paint and domestic sewage; (ii) surface runoff, wastewater, vehicle emissions and marine transportation; and (iii) ship repainting, dental clinics, electronic/chemical industries and leaded fuel, respectively. Moreover, GIS-based spatial analysis facilitated chemometric methods.     

Trace metals in harbour and slipway sediments from the island of Malta, central Mediterranean

Sediment samples collected from large harbours and public slipways on the island of Malta have been analysed for geochemically important metals (Al, Ca, Fe, Mn) and contaminant metals (As, Cd, Co, Cr, Cu, Ni, Pb, Sn, Zn) following fractionation (<63 μm) and digestion in aqua regia. Absolute and Al-normalised concentrations of contaminant metals exhibited relatively little dispersion both among different samples from the same location and between samples from different locations, notable exceptions including lower concentrations of Cr and Sn on the slipways than in the harbours. Sources of contaminant metals are attributed to diffuse and specific waste inputs from urban surroundings and boating and shipping activities. Overall, concentrations are similar to those reported for other large harbours in urban settings where equivalent sample fractionation-digestion has been performed. Relative to various sediment quality guidelines, Pb is predicted to exert the greatest threat to the marine environment of Malta.     

Deposition, mineralization, and storage of carbon and nitrogen in sediments of the far northern and northern Great Barrier Reef shelf

The flow of carbon and nitrogen in sediments of the far northern and northern sections of the Great Barrier Reef continental shelf was examined. Most of the organic carbon (81–94%) and total nitrogen (74–92%) depositing to the seabed was mineralized, with burial of carbon (6–19%) and nitrogen (8–20%) being proportionally less on this tropical shelf compared with other non-deltaic shelves. Differences in carbon and nitrogen mineralization among stations related best to water depth and proximity to river basins, with rates of mineralization based on net ∑CO₂ production ranging from 17 to 39 ( mean=23) mmol C m⁻² d⁻¹. The overall ratio of O₂:CO₂ flux was 1.3, close to the Redfield ratio, implying that most organic matter mineralized was algal. Sulfate reduction was estimated to account for ≈30% (range: 6–62%), and denitrification for ≈5% (range: 2–13%), of total C mineralization; there was no measurable CH₄ production. Discrepancies between ∑CO₂ production across the sediment–water interface and sediment incubations suggest that as much as 5 mmol m⁻² d⁻¹ (≈25% of ∑CO₂ flux) was involved in carbonate mineral formation. Most microbial activity was in the upper 20 cm of sediment. Rates of net NH₄⁺ production ranged from 1.6 to 2.7 mmol N m⁻² d⁻¹, with highly variable N₂ fixation rates contributing little to total N input. Ammonification and nitrification rates were sufficient to support rapid rates of denitrification (range: 0.1–12.4 mmol N m⁻² d⁻¹). On average, nearly 50% of total N input to the shelf sediment was denitrified. The average rates of sedimentation, mineralization, and burial of C and N were greater in the northern section of the shelf than in the far northern section, presumably due to higher rainfall and river discharge, as plankton production was similar between regions. The relative proportion of plankton primary production remineralized at the seafloor was in the range of 30–50% which is at the high end of the range found on other shelves. The highly reactive nature of these sediments is attributed to the deposition of high-quality organic material as well as to the shallowness of the shelf, warm temperatures year-round, and a variety of physical disturbances (cyclones, trawling) fostering physicochemical conditions favorable for maintaining rapid rates of microbial metabolism. The rapid and highly efficient recycling of nutrients on the inner and middle shelf may help to explain why the coral reefs on the outer shelf have remained unscathed from increased sediment delivery since European settlement.     

Pesticide and Herbicide Residues in Sediments and Seagrasses from the Great Barrier Reef World Heritage Area and Queensland Coast

Pesticides and herbicides including organochlorine compounds have had extensive current and past application by Queensland's intensive coastal agriculture industry as well as for a wide range of domestic, public health and agricultural purposes in urban areas. The persistent nature of these types of compounds together with possible continued illegal use of banned organochlorine compounds raises the potential for continued long-term chronic exposure to plants and animals of the Great Barrier Reef. Sediment and seagrass samples were collected from 16 intertidal and 25 subtidal sampling sites between Torres Strait and Townsville, near Mackay and Gladstone, and in Hervey and Moreton Bays in 1997 and 1998 and analysed for pesticide and herbicide residues. Low levels of atrazine (0.1–0.3 μg kg⁻¹), diuron (0.2–10.1 μg kg⁻¹), lindane (0.08–0.19 μg kg⁻¹), dieldrin (0.05–0.37 μg kg⁻¹), DDT (0.05–0.26 μg kg⁻¹), and DDE (0.05–0.26 μg kg⁻¹) were detected in sediments and/or seagrasses. Contaminants were mainly detected in samples collected along the high rainfall, tropical coast between Townsville and Port Douglas and in Moreton Bay. Of the contaminants detected, the herbicide diuron is of most concern as the concentrations detected have some potential to impact local seagrass communities.