The distribution and biomass of phytoplankton and phototrophic bacteria in Framvaren, a permanently anoxic fjord in Norway

The vertical distribution and biomass of phytoplankton and phototrophic bacteria in the permanently anoxic fjord, Framvaren in southern Norway, are described. The distribution of algal and bacterial pigments was studied at different seasons in the period from May 1980 to February 1985. The standing crop of phytoplankton was low in the upper part of the euphotic zone, but increased near the O₂/H₂S interface. An algal plate and a dense plate of phototrophic bacteria, measured as chlorophyll fluorescence and scattering, were detected near the interface. These plates of phototrophic micro-organisms were found to be photosynthetically active. Sharp concentration peaks near the interface were also found for the active biomass measured as adenosine triphosphate (ATP).     

Macrophyte production in a shallow coastal lagoon. Part I: Coupling with chemico-physical parameters and nutrient concentrations in waters

Standing crop and production of macroalgae and seagrasses were recorded, together with the main physical and chemical parameters, including nutrient concentrations of the water column and 5-cm top sediment porewater, the grazing pressure and the settled paniculate matter (SPM) in two areas of the central (Lido station) and southern (Petta di Bò station) parts of the Venice lagoon. Then the whole set of data was analysed by multivariate analysis. The highest standing crops of Ulva (Lido station) and Zostera (Petta di Bò station) monitored throughout the year (February 1994–February 1995) were ~ 6.5 and ~ 11.0 kg fwt m⁻², accounting for an annual net production of ~ 20.4 and ~ 20.9 kg fwt m⁻², respectively. The estimated gross production of Zostera was, however, ca 35–55% lower than that of Ulva because of the higher decomposition rate and grazing pressure suffered by the markedly stratified and light-limited free-floating fronds of the macroalga. At the Lido station, the overall grazing pressure accounted for ca 65% of the net Ulva production, but it was found to exceed the total production in the July–August period. Ammonium and orthophosphate concentrations in the water column and sediment porewater were ca 2–3 times higher at the Ulva than at the Zostera station. Considering the N:P atomic ratios, nitrogen, during the quick spring-summer biomass increase, could be temporarily critical for the macrophytic growth, especially at the Lido station. The rates of sediment resuspension and settlement were ca six times higher at the Zostera than at the Ulva station, mainly because of higher sediment coverage by the large free-floating fronds of Ulva. For the contribution of individual variables explained by the principal component analysis, it is shown that the Ulva decomposition at the Lido station and the Zostera production at Petta di Bò were the major factors affecting the total variance.     

Punctuated recovery of sediments and benthic infauna: a 19-year study of tailings deposition in a British Columbia fjord.

Sediment organic and metal chemistry, benthic infauna and tissue contaminants surveys have been conducted over 19 years before and following tailings deposition from a metal (Mo, Pb, Zn) mine in Alice Arm, a British Columbia fjord. We found changes in benthic fauna and habitat after tailings disposal to be predictable in terms of sediment chemistry and faunal recolonization. What was not predictable was the timing and extent of slope failure or resuspension following abandonment. These events can have essentially the same or greater effect than the initial tailings disposal and produce long-term unpredictability particular to cases of submarine disposal on slopes. The present study focused on the submarine deposition of 4 x 10(6) tonnes of tailings during an 18-months period ending October 1982. When the mine closed, gross defaunation had occurred at three stations in the tailings path, and two others showed recent defaunation and recolonization. A year later, a large tailings slump near the outfall transported tailings to the deep basin; fauna were impoverished both in the slump region and through most of the deep basin. Declining metal concentrations in surface sediments was accompanied by considerable recovery of fauna 3 years after the mine closed. Nevertheless, fauna at the three stations defaunated at the time of mine closure could still be statistically distinguished from all other stations due to high abundances of small opportunistic polychaetes and bivalves. A resuspension in tailings between 1988 and 1990 coincided with a moderate decline in abundance of all macrofauna taxa. From 1989 to 1995 recovery toward natural sediment conditions was evident as increasing organic content together with the highest faunal biomass values found during the study. Small polychaetes were the first recolonizers in defaunated areas, whereas small bivalves were more tolerant of moderate tailings deposition. By 1989 and 1995 small colonizers had declined and amphipods and larger echinoderms had increased. Dominant species patterns and exceptionally high biomass values in 1995 show that the largest fauna did not recover until much later than smaller taxa. One genus of bivalve (Yoldia spp.) accumulated metals in a pattern similar to the sediment chemistry, indicating that the metals from the most recent mine had entered the benthic food chain. It is not possible to tell from this study whether biota were affected by toxicity from metals. However, many of the observed biotic effects could be caused by physical disruption from tailings.     

Differences in spatial and seasonal patterns of macrophyte assemblages between a coastal lagoon and the open sea

Although benthic macrophytes must be considered in monitoring programs to establish the ecological status of transitional and coastal waters in the European Union, the patterns of variability in species composition of macrophyte assemblages in Mediterranean coastal lagoons has scarcely been studied. In this work the spatial (both vertical and horizontal) and seasonal dynamics of macrophyte assemblages in a coastal lagoon (Mar Menor) are compared with those of open coastal assemblages in the SW Mediterranean to analyze any biological variability in lagoon assemblages and the factors that determine such variability. Different assemblages, characterized by well defined groups of species, can be described according to their isolation from the open sea and the type of substratum; at the same time, a vertical zonation pattern, similar to that found in all marine communities but more compressed, exists. This implies that when applying the EU Water Framework Directive or assessing environmental impact, a lagoon should not be considered spatially uniform and unique unit but as a mosaic of assemblages.     

Trophic coupling between <Emphasis Type="Italic">Synechococcus</Emphasis> and pigmented nanoflagellates in the coastal waters of Taiwan,western subtropical Pacific

In our attempt to characterize the interaction of trophic coupling between Synechococcus and pigmented nanoflagellates (PNFs), successive size-fraction experiments were performed at a coastal station on the northeast coast of Taiwan from June, 2005 to January, 2006. By estimating the growth rate and grazing rate of Synechococcus in the presence of nanoflagellates of different sizes, we truncated the food web by removing organisms with different body sizes (<2 μm, <5 μm, <10 μm, and <20 μm). The growth rates of Synechococcus ranged from −0.016 to 0.051 h⁻¹ during the experimental period, suggesting that temperature was a primary mechanism controlling Synechococcus growth. In addition to size and relative biomass of pigmented nanoflagellates and Synechococcus, it is suggested that community structures played an important role in trophic link. Furthermore, we conclude that the trophic cascading effect in the northeast coast of Taiwan includes: 1) high grazing rates at night in the warm season; 2) the Synechococcus biomass generally exceeds the grazing threshold (6 × 10⁴ cells mL⁻¹); and 3) the biomass ratio of <5 μm PNFs to >5 μm PNFs should be 1:1 to 2:1.     

我国近海裸胸鳝属鱼类新记录种——黏裸胸鳝（Gymnothorax mucifer）形态与分子系统学研究

本研究于2020-2021年在福建省厦门市近海水产市场采集到4尾黏裸胸鳝样品,为中国大陆近海新记录种。此前,该物种仅在澳大利亚、夏威夷等地有分布记录,并被认为是蠕纹裸胸鳝同种异名。本研究对采集的黏裸胸鳝进行详细形态特征分析,结合DNA条形码COI基因进行分子鉴定及系统进化关系分析。黏裸胸鳝的主要鉴别特征：体为黄棕色,头部前端淡紫色,身体布满细长、稀疏、弥散的树枝状不规则棕色斑纹,斑纹颜色靠近尾部加深加粗,形成网格状;臀鳍边缘白色,近尾部变为一列连续白色斑点;全长为体长的1.01倍,为头长的8.00～8.39倍;上颌齿每侧8～10个,下颌齿每侧14～20个,中央齿细长,均为单行;总椎骨数为117～139,平均椎骨式为6-47-130。基于COI基因分析,黏裸胸鳝与蠕纹裸胸鳝的遗传距离为0.074,大于Herbert设定的2%(0.020)作为区分不同物种最小遗传距离,表明两者应为不同的物种。形态上,两种裸胸鳝也存在差异特征,如黏裸胸鳝的斑纹较细长、稀疏、不明显,头部前端偏淡紫色,臀鳍白色边缘近尾部断裂成系列连续白色斑点;蠕纹裸胸鳝的斑纹粗大明显、颜色较深,头部前端黄白色,臀鳍白色边缘连续...     

Evaluating the relationship between spatial heterogeneity and temporal variability of larval fish assemblages in a coastal marine ecosystem (Haizhou Bay,China)

In coastal marine ecosystems, spatial patterns of larval fish assemblages (LFAs) tend to exhibit geographic stability because of relatively stable spawning site selection and predictable oceanographic phenomena such as eddies. To evaluate the relationship between spatial heterogeneity and temporal variability of LFAs, we conducted a high spatiotemporal resolution ichthyoplankton survey from April to July in 2013 in the shallow waters (<20 m) of Haizhou Bay, China. Our analysis indicated three distinct assemblages, which were stable geographically but exhibited a gradual and directional change of species composition and abundance over our study period. Sea surface temperature was the most important environmental co‐variate for determining temporal variability of LFAs, likely owing to temperature effects of species composition and spawning period selection of adult fish, along with known temperature‐dependent survival rates of larval fish. Study of LFA spatiotemporal dynamics is essential for improved understanding of adult fish spawning behavior, and has potential to inform design and implementation of conservation and management measures (e.g. marine protected areas) in coastal systems.     

Numerical modeling of flow and scour below a pipeline in currents: Part II. Scour simulation

A vertical two-dimensional (2D) numerical model for time dependent local scour below offshore pipelines subject to unidirectional steady flow is developed. The governing equations for the flow and sediment transport are solved by using finite difference method in a general curvilinear coordinate system. The performance of two turbulence models, the standard k–ɛ model and Smagorinsky subgrid scale (SGS) model, on modeling time dependent scour processes is examined. Both suspended load and bed load are considered in the scour model. The suspended-load model is verified against two channel sediment transport cases. The change of bed level is calculated from the continuity equation of total sediment transport. A new time marching scheme and a sand slide scheme are proposed for the scour calculation. It is found that the proposed time marching scheme and sand slide model work well for both clear-water and live-bed scour situations and the standard k–ɛ turbulence closure is more preferable than the SGS model in the 2D scour model developed in this study.     

Numerical modeling of flow and scour below a pipeline in currents: Part I. Flow simulation

The performance of the standard k–ε, Wilcox high-Reynolds-number k–ω, Wilcox low-Reynolds-number k–ω and Smagorinsky's subgrid scale (SGS) turbulence models is examined against the flow around a circular cylinder 0.37 diameter above a rigid wall. The governing equations are solved using finite difference method in a non-orthogonal boundary-fitted curvilinear coordinate system. A mesh dependence study for the four turbulence models is carried out on computational meshes with different densities. In addition, the performance of the k–ω models with either wall function or no-slip boundary condition on the cylinder surface is examined on the finest mesh. It is found that the SGS model over-predicts the shedding of vortices from the cylinder and is sensitive to the computational mesh and the model constant C_s used. The standard k–ε and the Wilcox k–ω models predict the mean velocity field quite well but generally under-predict the velocity and hydrodynamic force oscillations using wall functions on the cylinder surface. It is also found that the Wilcox k–ω models with the no-slip boundary condition on the cylinder surface give better predictions on the shedding of vortices than their counterparts using the wall function boundary condition.     

Combining Argo profiles with a general circulation model in the North Atlantic. Part 2: Realistic transports and improved hydrography,between spring 2002 and spring 2003

A set of Argo profiles collected in the North Atlantic between May 2002 and April 2003 is combined with a low-resolution general circulation model (GCM) using the adjoint method. Fitting the real hydrographic observations leads to vast improvements in the model circulation, including the sea surface height and the meridional heat transport. We find striking differences in basin-scale transports compared with previous assimilation experiments that use the same GCM and a similar spatial resolution. Based on forward modeling studies, it is argued that these differences are due to different assimilation experiment durations. Over 1 year, the hydrography interpolated with the GCM from Argo profiles better represents the contemporary structures than does a long-term averaged climatology. The GCM dynamics are robust enough to distinguish between contemporary hydrography and climatological hydrography.     

Impacts of maintenance channel dredging in a northern Adriatic coastal lagoon. II: Effects on macrobenthic assemblages in channels and ponds

Coastal lagoons are ephemeral habitats whose conservation requires human intervention, such as maintenance dredging of inner channels. Dredging can reduce the abundance of benthic species due to the removal of individuals with the sediment, modify sediment properties, and resuspend fine sediment, nutrients and pollutants, which can lead to eutrophication, hypoxic events and increasing toxicity. Both direct effects in the dredged channel and possible indirect effects in surrounding shallow areas could be expected. This study assesses the effects of the channel maintenance dredging, performed between October 2004 and August 2005, on the invertebrate assemblages both in channels and adjacent ponds in the northern Adriatic coastal lagoon of Pialassa Baiona. The lagoon is affected by eutrophication, chemical and thermal pollution from wastewater treatment and power plants. Three impacted sites were located in the dredged channel and three in the adjacent interconnected shallow water ponds, while three non-impacted sites were located in a channel and in a pond far from the dredged area. Replicate samples were collected from each site one time before and one time after the dredging operations. Despite the extent of the intervention, effects of the dredging on macrobenthic assemblages were detected only within the dredged channel, while in the surrounding ponds no clear and unequivocal effects were found. In particular the dredging could have promoted the increase of the abundance of the polychaete Streblospio shrubsolii in the southern and central parts of the dredged channel and the increase in abundance of the amphipod Corophium insidiosum in the northern side, compared to the controls. Instead, species diversity was reduced in the central and northern parts of the dredged channel. These effects on the macrobenthic invertebrate assemblages could be related to the observed changes of sediment characteristics, contamination and toxicity. Overall, direct effects on benthic assemblages in the dredged channels were more detectable than the possible secondary effects in the surrounding shallow ponds, where the higher spatial heterogeneity can mask any relevant effects.     

Home range,residency and movements of Diplodus sargus and Diplodus vulgaris in a coastal lagoon: Connectivity between nursery and adult habitats

Acoustic telemetry and standard tag-recapture were used to determine the home range and residency of juveniles and sub-adults of Diplodus sargus and Diplodus vulgaris in the Ria Formosa (Portugal) coastal lagoon. Maximum time between recaptures for the standard tag-recapture method was 128 days for D. sargus and 30 days for D. vulgaris. The majority of the fish were recaptured in the vicinity of the tagging location. Fish tagged with acoustic transmitters had a maximum period of time between first and last detections of 62 days for D. sargus and 260 days for D. vulgaris. Minimum convex polygons areas ranged between 148?024 m² and 525?930 m² for D. sargus and between 23?786 m² and 42?134 m² for D. vulgaris. Both species presented a high residency index between first and last detections. Two D. sargus tagged with acoustic tags were recaptured by fishermen outside the coastal lagoon at distances of 12 km and 90 km from the tagging position, providing evidence that this species leaves the Ria Formosa during the winter time for the adjacent coastal waters. The results of this study reinforce the importance of Ria Formosa as a nursery for D. sargus and D. vulgaris in the south coast of Portugal.     

Impacts of maintenance channel dredging in a northern Adriatic coastal lagoon. I: Effects on sediment properties,contamination and toxicity

Conservation and management of coastal lagoons envisage direct human intervention. To prevent siltation and to preserve the hydrodynamics features of the lagoon system, the inner channels undergo regular maintenance dredging.     

Equilibrium and structural studies of silicon(IV) and aluminium(III) in aqueous solution. II. Formation constants for the monosilicate ions SiO(OH)3− and SiO2(OH)22−. A precision study at 25°C in a simplified seawater medium

The hydrolysis of silicic acid, Si(OH)₄, was studied in a simplified seawater medium (0.6 M Na(Cl)) at 25°C. The measurements were performed as potentiometric titrations (hydrogen electrode) in which OH^? was generated coulometrically. The total concentration of Si(OH)₄, B, and log[H⁺] were varied within the limits 0.00075 ? B ? 0.008 M and 2.5 ? -log[H⁺] ? 11.7, respectively. Within these ranges the formation of SiO(OH)₃^? and SiO₂(OH)₂^2? with formation constants log β_?11(Si(OH)₄ ? SiO(OH)₃^? + H⁺) = ?9.472 ±0.002 and log β_?21(Si(OH)₄ ? SiO₂(OH)₂^2? + 2H⁺) = ?22.07 ± 0.01 was established. With B > 0.003 M polysilicate complexes are formed, however, with $\text{-}\text{log[H}{}^{\mathrm{+}}\text{] ? 10.7}$ their formation does not significantly affect the evaluated formation constants. Data were analyzed with the least squares computer program LETAGROPVRID.     

Combining Argo profiles with a general circulation model in the North Atlantic. Part 1: Estimation of hydrographic and circulation anomalies from synthetic profiles,over a year

Argo is a global array of profiling floats that provides temperature (T) and salinity (S) profiles from 2000 m to the surface every ten days with a nominal spatial resolution of 3°. Here we present idealized experiments where the adjoint method is used to synthesize simulated sets of Argo profiles with a general circulation model, over a one-year period, in the North Atlantic. Using a number of drifting profilers consistent with Argo deployment objectives, the simulated array permits one to identify large-scale anomalies in the hydrography and circulation, despite the presence of a simulated eddy noise of large amplitude. Model dynamics provide an objective means to distinguish eddy noise from large-scale oceanic variability, and to infer the absolute velocity field (including abyssal velocities and sea surface height) from sets of Argo profiles of T and S. In particular, our idealized experiments suggest that volume and heat transports can be efficiently constrained by sets of Argo profiles. Increasing the number of Argo floats seems to be an adequate strategy to further reduce errors in circulation estimates.