Di-nitrogen fixation in a eutrophic tropical bay

Di-nitrogen fixation, measured in situ by the acetylene reduction technique, was shown to be associated with regular summer blooms of Oscillatoria erythraea in Mazatlán bay, a eutrophic tropical embayment on the Pacific Coast of Mexico. The Oscillatoria population density and the rate of di-nitrogen fixation per cell were of similar magnitude to those observed by other workers in the oligotrophic Caribbean Sea. Since the non-nitrogen limited fraction (Oscillatoria) of the total population was generally less than 10% and the nutrient supply to the bay is relatively abundant, di-nitrogen fixation does not appear to play an important role in the eutrophication of the bay.     

Virioplankton distribution and activity in a tropical eutrophicated bay

The study of lysogeny in aquatic systems is an often overlooked aspect of microbial ecology, especially in tropical environments. Herein, the fraction of lysogenized cells (FLC) was detected in the surface waters of 20 coastal stations distributed from the eutrophicated shoreline to seaward waters of Hann Bay (Senegal). Concurrently, viral lytic infection rates were extrapolated from the frequency of visibly infected bacterial cells (FVIC), as determined from transmission electron microscopy observations. The experimental induction of prophage was observed in less than 3% of indigenous marine bacteria, suggesting that lysogenic stages of infection are rare in Hann Bay. Similarly, only 0.5–4.7% of bacteria showed visible signs of lytic infection. However, the positive correlation between the fraction of lysogenic and lytic cells (r = 0.67, p < 0.05, n = 20) may actually indicate that the coexistence of both lifestyles may be due to the massive and rapid induction of lysogens, potentially from the high levels of local UV radiation. Overall, we suggest that the determination of FVIC and FLC to examine the predominance of one type of cycle versus the other may be a source of misinterpretation in some particular aquatic environments.     

Seasonal variation of sedimentary processes in a semi-enclosed bay: Hampyong bay,Korea

Multi-annual sedimentological observations on tidal-flat sediments were carried out in Hampyong Bay, southeastern Yellow Sea, to infer the budget of modern muddy sediments in the bay. Sedimentation rates over a four-year period show contrasting types of seasonal sedimentary cycles occurring in the tidal flats within the elongated bay. Both sides of the bay are largely sheltered from winter waves, resulting in surface mud deposition during winter and erosion during summer. In contrast, tidal flats along the head of the bay are influenced by winter waves, resulting in a reversed trend where erosion occurs during winter and deposition during summer. Tidal flats near the bay-mouth, however, show a sedimentary cycle disrupted by the construction of sea walls undergoing consistent erosion throughout the observational period. The shoreline artificially straightened seems to cause tidal currents to bypass the tidal flat and hence to be much stronger. These differences in sedimentary cycles suggest the critical importance of the orientation of tidal flats relative to the propagating direction (from N–NW) of the monsoon winter-storm waves on the tidal-flat sedimentation in the eastern coastal area of the Yellow Sea. The preliminary budget estimation for the tidal-flat mud suggests that the tidal flats in Hampyong Bay are subject to the slight but consistent erosion as a whole.     

中国海洋生物地球化学过程研究的最新进展

海洋是全球生态系统的重要组成部分,在地球系统中,其与大气、陆地紧密联系在一起,在调节全球气候等方面发挥着举足轻重的作用。全球变化引起的海洋变化十分明显,现在已经能够观测到海洋的大尺度物理、化学和生物特征的变化,其中海洋食物链结构、海岸带富营养化和珊瑚礁退化最为     

Carbohydrates as indicators of biogeochemical processes

A method is presented to study the carbohydrate composition of marine objects involved into sedimento- and diagenesis (plankton, particulate matter, benthos, and bottom sediments). The analysis of the carbohydrates is based upon the consecutive separation of their fractions with different solvents (water, alkali, and acid). The ratio of the carbohydrate fractions allows one to evaluate the lability of the carbohydrate complex. It is also usable as an indicator of the biogeochemical processes in the ocean, as well of the genesis and the degree of conversion of organic matter in the bottom sediments and nodules. The similarity in the monosaccharide composition is shown for dissolved organic matter and aqueous and alkaline fractions of seston and particulate matter.     

Monsoon-driven biogeochemical processes in the Arabian Sea

Although it is nominally a tropical locale, the semiannual wind reversals associated with the Monsoon system of the Arabian Sea result annually in two distinct periods of elevated biological activity. While in both cases monsoonal forcing drives surface layer nutrient enrichment that supports increased rates of primary productivity, fundamentally different entrainment mechanisms are operating in summer (Southwest) and winter (Northeast) Monsoons. Moreover, the intervening intermonsoon periods, during which the region relaxes toward oligotrophic conditions more typical of tropical environments, provide a stark contrast to the dynamic biogeochemical activity of the monsoons. The resulting spatial and temporal variability is great and provides a significant challenge for ship-based surveys attempting to characterize the physical and biogeochemical environments of the region. This was especially true for expeditions in the pre-satellite era.Here, we present an overview of the dynamical response to seasonal monsoonal forcing and the characteristics of the physical environment that fundamentally drive regional biogeochemical variability. We then review past observations of the biological distributions that provided our initial insights into the pelagic system of the Arabian Sea. These evolved through the 1980s as additional methodologies, in particular the first synoptic ocean color distributions gathered by the Coastal Zone Color Scanner, became available. Through analyses of these observations and the first large-scale physical–biogeochemical modeling attempts, a pre-JGOFS understanding of the Arabian Sea emerged. During the 1990s, the in situ and remotely sensed observational databases were significantly extended by regional JGOFS activities and the onset of Sea-viewing Wide Field-of-View Sensor ocean color measurements. Analyses of these new data and coupled physical–biogeochemical models have already advanced our understanding and have led to either an amplification or revision of the pre-JGOFS paradigms. Our understanding of this complex and variable ocean region is still evolving. Nonetheless, we have a much better understanding of time–space variability of biogeochemical properties in the Arabian Sea and much deeper insights about the physical and biological factors that drive them, as well as a number of challenging new directions to pursue.     

跨海大桥建设对胶州湾北部冬季结冰现象的影响

本文利用台站观测、卫星遥感以及专项调查等多种数据,综合分析了近年来胶州湾典型水文气象要素的变化特征及建桥前后水动力环境等的变化对冬季冰情的影响。结果显示,建桥以来冰情较重的年份冬季气温和年最低气温均处于近30年的低位,重冰期与年最低气温时段相吻合,且以跨海大桥为界,北部海湾结冰现象严重,而南部几乎无结冰。基于区域海洋水动力模型(ECOM)的模拟结果显示,跨海大桥建设可以从几个方面影响胶州湾北部海冰的生消,即大桥建设使胶州湾尤其是大桥北侧的水动力环境弱化,落潮时桥北侧水体堆积,涨潮时桥北侧向陆一侧水位减小;大桥对桥位南北1.5 km周围涨、落潮流场产生影响;流场的变化又使得悬浮物对流扩散和沉积物输运发生改变,大桥北侧局部区域水深变浅。     

Seasonal variations in dissolved organic carbon concentrations and characteristics in a shallow coastal bay

Dissolved organic matter (DOM) composition and dynamics in temperate shallow coastal bays are not well described although these bays may be important as local sources of organic carbon to ocean waters and are often sites of economically-important fisheries and aquaculture. In this study surface water samples were collected on a monthly to bi-monthly basis over two years from a mid-Atlantic coastal bay (Chincoteague Bay, Virginia and Maryland, USA). Dissolved organic carbon (DOC) concentrations and light absorbance characteristics were measured on sterile-filtered water, and high-molecular weight (> 1 kDa) dissolved OM (DOM) was isolated to determine stable isotope composition and molecular-level characteristics. Our time series encompassed both a drought year (2002) and a year of above-average rainfall (2003). During the dry year, one of our sites developed a very intense bloom of the brown tide organism Aureococcus anophagefferens while during the wet year there were brown tide bloom events at both of our sampling sites. During early spring of the wet year, there were higher concentrations of > 1 kDa DOC; this fraction represented a larger proportion of overall DOC and appeared considerably more allochthonous. Based upon colored dissolved organic matter (CDOM) and high-molecular weight DOM analyses, the development of extensive phytoplankton blooms during our sampling period significantly altered the quality of the DOM. Throughout both years Chincoteague Bay had high DOC concentrations relative to values reported for the coastal ocean. This observation, in conjunction with the observed effects of phytoplankton blooms on DOM composition, indicates that Chincoteague Bay may be a significant local source of “recently-fixed” organic carbon to shelf waters. Estimating inputs of DOC from Chincoteague Bay to the Mid-Atlantic Bight suggests that shallow productive bays should be considered in studies of organic carbon on continental shelves.     

低氧环境对沉积物中生源要素生物地球化学循环的影响

目前,低氧现象已经成为一个全球性的海洋环境问题,而且有逐步恶化的趋势,据报道,世界范围内的低氧区已经由20世纪50年代以前的20多个增长到现在的400多个[1]。尤其是在近海海域,由于人为活动的影响,造成了非常严重的富营养化问题,而由此所引起的低氧现象也日益严重,并已成为海     

Effects of substratum type on fish assemblages in shallow areas of a tropical estuary

While there is already a comprehensive understanding of the effects of environmental variables, such as dissolved oxygen, temperature and salinity, on the structure, biomass and metabolism of aquatic biota in estuarine habitats, the effect of sedimentation, a harmful underlying factor, remains unclear. The aim of this study was to assess the differences in fish assemblages along the freshwater to salt water gradient of a large tropical estuary, and to evaluate the effects on them of habitat disturbance associated with shallow water sedimentation in the intertidal areas. Fish and environmental variables were recorded in the upper, middle and lower salinity zones of the estuary at ebb tide in both the dry and wet seasons. Sediment samples associated with different levels of habitat disturbance were analysed using granulometry, and their organic content and dissolved oxygen levels were quantified. Water temperature, salinity, pH and dissolved oxygen levels were also measured. Habitat disturbance was found to be correlated with the density, biomass and richness of fish assemblages. A total of 77 species were recorded, forming two distinct fish assemblages, with the Eleotridae family dominating in the upper zone, and Gerreidae, Gobiidae and Tetraodontidae the most common in the middle and lower estuary. Changes in the structure of fish assemblages, including reductions in density, biomass and richness, were associated with disturbance to natural features, where muddy sediment was replaced by sandy sediment and the quantity of organic matter fell. Atherinella brasiliensis was the species which showed a preference for the disturbed areas in the middle and lower zones, while Dormitator maculatus showed a preference for them in the upper estuary. They may be taken as indicators of habitat disturbance due to shallow sedimentation.     

Habitat utilization by fishes in a shallow, semi-enclosed estuarine bay in southern Gulf of Thailand

One hundred and eight fish species were collected between March 2003 and February 2004 from 11 study sites in Pattani Bay, southern Gulf of Thailand. The catches consisted primarily of juveniles or adults of small-sized fishes, indicating that the bay was important as nursery ground for fishes. Of the 43 families, Leiognathidae (43.3% contribution), Centropomidae (15.2%), Siganidae (13.8%), Engraulidae (10.3%), Atheriniidae (6.9%), Clupeidae (4.8%) and Ariidae (3.1%) were dominant in the catch. Significant differences were found in relative abundance and species richness between both sampling sites and months. The sampling sites were clearly defined by fish community into four different habitats that were directly related with the bottom structure of each site. The 30 most dominant fish species were categorized according to habitat preference into five different groups. Some species exhibited preference for specific habitats, whereas others were distributed throughout the bay. Seasonally, fish community structure revealed four different recruitment and occurrence periods, which were February to April, May to September, October and November to January, which was partially related to local monsoonal seasons. Analysis of the 30 most dominant fish species demonstrated that they were clustered into six different seasonal groups, with some showing a clear preference for specific months, although many recruited and occurred throughout the year. Results of this study help to clarify the ranges of habitats, months and seasons used by a number of fish species found in tropical coastal habitat.     

Impact of climate variability on an east Australian bay

The climate along the subtropical east coast of Australia is changing significantly. Rainfall has decreased by about 50 mm per decade and temperature increased by about 0.1 °C per decade during the last 50 years. These changes are likely to impact upon episodes of hypersalinity and the persistence of inverse circulations, which are often characteristic features of the coastal zone in the subtropics and are controlled by the balance between evaporation, precipitation, and freshwater discharge. In this study, observations and results from a general ocean circulation model are used to investigate how current climate trends have impacted upon the physical characteristics of the Hervey Bay, Australia. During the last two decades, mean precipitation in Hervey Bay deviates by 13% from the climatology (1941–2000). In the same time, the river discharge is reduced by 23%. In direct consequence, the frequency of hypersaline and inverse conditions has increased. Moreover, the salinity flux out of the bay has increased and the evaporation induced residual circulation has accelerated. Contrary to the drying trend, the occurrence of severe rainfalls, associated with floods, leads to short-term fluctuations in the salinity. These freshwater discharge events are used to estimate a typical response time for the bay.     

Biodiversity patterns of free-living marine nematodes in a tropical bay: Cienfuegos, Caribbean Sea

Spatial and temporal biodiversity patterns of free-living marine nematodes were studied in Cienfuegos Bay, a tropical semi-enclosed basin in the Caribbean Sea. Taxonomic (to species level) and functional (biological trait) approaches were applied for describing the assemblage structure and relating it to abiotic environment based on a sampling scheme in six subtidal stations and three months. Biological trait approach added relevant information to species pattern regarding relationships between diversity patterns and the abiotic environment. The most common morphotypes were deposit feeding nematodes, with colonising abilities of 2–3 (in a scale from 1 to 5), tail conical cylindrical or filiforme and body slender; and their abundance were correlated with depth, organic matter and silt/clay fraction. In spite of a high turnover of species, functional diversity of assemblages did not change notably in space and time. A result probably due to sampling of the habitat pool of species and to low heterogeneity of the studied muddy bottoms. Chemical pollution (organic enrichment and heavy metals) and hydrodynamic regime possibly drove the biodiversity patterns. Spatial distribution of assemblages support the existence of two well differentiated basins inside the bay, the northern basin more polluted than the southern one. The low hydrodynamic regime would determine a poor dispersion of nematodes resulting in high spatial variance in the assemblage structure; and also the associated hypoxic conditions and pollutants in sediments can explain the dominance of tolerant nematode species such as Daptonema oxycerca, Sabatieria pulchra, Terschellingia gourbaultae, and Terschellingia longicaudata. A comparison of spatial–temporal patterns of biodiversity between Cienfuegos Bay and other semi-enclosed bays in temperate regions suggests several similarities: nematode assemblages are strongly influenced by anthropogenic disturbance, temporal trends are weak or overridden by spatial ones, and few cosmopolitan genera/species tolerant to pollution and hypoxic conditions are dominant.     

Co-occurrence of demersal fishes in a tropical bay in southeastern Brazil: A null model analysis

Co-occurrence of demersal fishes was assessed in a tropical bay in southeastern Brazil along an environmental gradient (inner, middle, and outer zones), defined according to depth and salinity. The aim was to test whether fish species are distributed randomly and independently of one another in accordance with a null model. The unconstrained null hypothesis for occurrence of a given species by chance in relation to other species was accepted for each zone separately, and rejected for the bay as a whole, for the full year and for each season separately, except summer. Findings of the environmentally constrained null models, which predict species presence or absence as a function of environmental conditions, were not significant, suggesting that the environmental variables we chose are not key factors for these species and that biotic interactions between species are not strong when species–environment relationships are considered. The partition of available resources inside each zone and fish movements along the three zones during summer may have contributed to higher fish species co-occurrence. Habitat segregation in the bay during the remaining seasons could explain the pattern of reduced co-occurrence, indicating the presence of two fish assemblages associated with different environmental characteristics.     

Population parameters of Pleopis polyphemoides (Crustacea, Cladocera) in a tropical bay

Populations of Pleopis polyphemoides were studied in Guanabara Bay, southeastern Brazil, to assess temporal variations in density and population parameters. The abundance of P. polyphemoides varied widely during summer, and collapsed in fall–winter. These variations probably resulted from the combined effects of water temperature and predation pressure. It is assumed that the planktonic population began by hatching from resting eggs, while the collapse of the planktonic population in April seemed to be related to lower temperatures and high densities of predatory chaetognaths.     

Water circulation dynamics, water column nutrients and plankton productivity in a well-flushed tropical bay in Kenya

Water circulation, water column nutrients and plankton productivity were studied in a tropical bay with high rates of water exchange (60% to 90% per tide) and short residence times (3 to 4 h). The water circulation is predominantly affected by the semi-diurnal tides, which cause strong and reversing currents in the mangrove creeks (0.60 m·s⁻¹) and currents of low magnitude in the neighbouring seagrass and coral reef zones (< 0.30 m·s⁻¹). Tidal asymmetry, with relatively stronger ebb than flood flows in the mangrove creeks, promotes the net export of nutrients from the river mouth and of organic matter from the mangroves to the seagrass beds. The main sources of the dissolved inorganic nutrients are two rivers (the Kidogoweni and Mkurumuji) which discharge (up to 17.0 m³·s⁻¹) in the upper and lower regions of the bay. The increased input of nutrients did not cause eutrophic conditions since nutrients were rapidly flushed out of the bay. The mangrove biotope generated small amounts of dissolved nutrients which are likely to be used for primary production within the mangrove zone. The production of nutrients in the mangrove zone was masked by high rates of flushing, such that no appreciable nutrient signal was detected in the dry season when the influence of the rivers diminished. The rates of primary production were low in the mangrove, seagrass, and coral reef biotopes in the dry season. Primary production increased slightly during the rainy season. The level of chlorophyll a in the mangrove biotope increased during ebb tides and decreased during flood tides. The highest zooplankton densities, which could not be related directly to primary production in the water-column, occurred at the seagrass station during the wet season.     

Effect of biogeochemical diagenesis on sediment fabric in shallow marine carbonate sediments near the Dry Tortugas, Florida

 Shallow marine carbonate sediments near the Dry Tortugas undergo extensive biogeochemical diagenesis upon deposition, resulting in postdepositional fabric comprised of micritic aggregates of clay-sized particles, a matrix of peloidal mud, and intraparticular cementation. Freshly deposited primary skeletons, mostly Halimeda fragments, yield micritic aggregates of clay-sized particles, which then form peloidal mud fabric upon compaction. The cryptocrystalline particles produced by micritization are later replaced by high magnesian calcite. Cementation is observed in the intra-particular microenvironment. However, no inter-particular, grain-binding cement was detected throughout the gravity core samples investigated.     

Response of the epibenthic macrofaunal community to a strong upwelling-driven hypoxic event in a shallow bay of the southern Humboldt Current System

In January 2008, most of the southern coastal zone of the Humboldt Current System was affected by an intense upwelling event. This caused an intrusion of equatorial sub-surface water into the coastal zone, generating severe hypoxic conditions (≤0.5 ml O₂ l⁻¹) three days after the beginning of the event. A rapid, massive die-off of marine organisms occurred in Coliumo Bay on January 3rd, affecting zooplankton, mollusks, crustaceans and fishes. Normal oxygen concentrations were observed on January 10th, seven days after the hypoxic event. Here we analyze the response of the epibenthic macrofauna community using data spanning three years of sampling which encompass the short-term hypoxic disturbance in the bay. We found that (i) strong changes in total density, total biomass, and diversity occurred immediately after the hypoxic event, negatively affecting crustaceans and fishes, while gastropods were favored, (ii) initial changes were reverted over a period of three months, (iii) on an inter-annual time scale, species richness and diversity decreased following the hypoxic event. Total density increased strongly, but total biomass showed no clear inter-annual trend. These results show that, while initial recovery from hypoxia was fast, over longer time scales the community exhibited a shift to an alternative structure dominated principally by Nassariid scavenger species.