Distribution and ecological relevance of fine sediments in organic-enriched lagoons: the case study of the Cabras lagoon (Sardinia, Italy)

In organic-enriched sedimentary systems, like many Mediterranean coastal lagoons, a detailed analysis of sediment grain size composition and partitioning within the muds is crucial to investigate sedimentological trends related to both hydrodynamic energy and basin morphology. In these systems, sediment dynamics are particularly important because the partitioning and transport of fine sediments can strongly influence the redistribution and accumulation of large amounts of organic matter, and consequently the distribution of benthic assemblages and the trophic status and functioning of a lagoon. Nevertheless, studies on benthic-sediment relationships have been based mainly on a rather coarse analysis of sediment grain size features. In muddy systems, however, this approach may impede a proper evaluation of the relationships and effects of the distribution of fine sediment and organic matter on the biotic benthic components. Here we show that the distribution of sedimentary organic matter (OM) and total organic carbon (TOC) in the Cabras lagoon (Sardinia, Italy) can be explained (i.e., predicted) as a function of a nonlinear increase in the amount of the cohesive fraction of sediments (< or = 8 microm grain size particles) and that this fraction strongly influences the structure, composition and distribution of macrobenthic assemblages. Even in such a homogeneously muddy system, characterized by "naturally" occurring impoverished communities, impaired benthic assemblages were found at < or = 8 microm, OM, TOC contents of about 77%, 11% and 3.5%, respectively. A review of studies conducted in Mediterranean coastal lagoons highlighted a lack of direct integrated analysis of sediment features and the biotic components. We suggest that, especially in organic-enriched coastal lagoons, monitoring programs should primarily investigate and consider the cohesive fraction of sediments in order to allow a better assessment of benthic-sediment relationships and ecological quality of the system.     

Hydrodynamics and suspended sediment transport at tidal inlets of Salut Mengkabong Lagoon,Sabah,Malaysia

Salut-Mengabong Lagoon is located at the west coast of Sabah facing the South China Sea. At the bay side of the main inlet the lagoon splits into Salut and Mengabong Channels. Sediment dynamics at the inlets of the lagoon have recently received considerable attention. But any direct measurement of hydrodynamics and sediment flux are yet to be well documented. This study covers the field measurements of current velocity, water flux, suspended sediment concentration and sediment flux across the three transects (main inlet, Salut entrance and Mengkabong entrance) during typical spring and neap tidal cycles in southwest monsoon and northeast monsoon. Temporal variations and time-averaged values of measured parameters are discussed. The inlets of Salut-Mengkabong Lagoon are found to be ebb-dominated. The time-averaged velocities during spring tidal measurements are found to be higher in the main inlet followed by Mengkabong entrance and Salut entrance. Suspended sediment concentration and sediment fluxes are substantially higher in spring tidal cycles compared to the same in neap tidal cycles. During spring tidal cycles, ebb tidal sediment fluxes are higher than the flood tidal fluxes. The ebb dominated flux across the main inlet led to the large ebb shoal.     

Structuring factors of the spatio-temporal variability of macrozoobenthos assemblages in a southern Mediterranean lagoon: How useful for bioindication is a multi-biotic indices approach?

The authors investigated the impact of the extension of the El Kantra Channel on the composition and structure of macrobenthic assemblages in Boughrara Lagoon (Gulf of Gabes, Tunisia along with the use of 4 biotic indices (AMBI, BENTIX, M-AMBI and TUBI). Thirteen stations were sampled seasonally in 2012–2013. Forty-one species were found in 2012–2013 not recorded in 2009–2010, including 20 species of polychaetes belonging to the trophic groups of deposit-feeders and carnivores which are expected to increase in areas disturbed by organic pollution. During the survey, we recorded a high fish mortality, essentially caused by the development of harmful algal blooms (HAB) which increased organic matter deposition, thus inducing polychaete development. This seems to weaken the bio-indicating power of biotic indices used here which, paradoxically, classified all sampled stations at a high ecological status. A review of these indices and their applicability to all marine environments is recommended.     

Wind and freshwater influence over hydrocarbon dispersal on Patos Lagoon, Brazil

The two-dimensional barotropic, hydrodynamic and transport model MOHID is applied to the Patos Lagoon system using a nested modelling approach to reproduce both the lagoon and estuary hydrodynamics. A new Lagrangian oil spill model is presented and used to simulate a hypothetical oil spill in the estuary. Hydrodynamic fields are validated and used to force the oil model. Results show that the hydrodynamics of this system is mainly controlled by the wind and freshwater discharge. The dispersion, concentration and thickness evolution of the oil in the first day after the spill is determined by the equilibrium between these two factors. The freshwater discharge is the major factor controlling the oil dispersion for discharges greater than 5000 m3 while the wind assumes control for lower discharge amounts. The results presented are a first step toward a coastal management tool for the Patos Lagoon.     

Groundwater connections under a barrier beach: A case study in the Venice Lagoon

The flow of groundwater beneath barrier islands has been cited as a possible pathway for salt water and chemical exchange between a protected embayment and the open sea. Evidence is presented that identifies an exchange of groundwater through a highly permeable paleoinlet along the barrier beach of Cavallino, which separates the northern Venice Lagoon from the Adriatic Sea. We utilized both point measurements of submarine groundwater discharge (SGD) and a geophysical investigation of the subsurface resistivity to analyze the movement of saline groundwater. Discharge of groundwater and associated nutrients, was higher at the site of a former inlet than at a similar site along the barrier and modulated by the difference in tidal water level between the lagoon and Adriatic Sea. If the measured conditions are typical, storm surge barriers could potentially result in a saline groundwater flow of up to 1.5×10⁶ m³ d⁻¹ into the lagoon.     

Influence of algal farming on fish assemblages

We examined the influence of algal farming on fish assemblages in two shallow coastal lagoons in Zanzibar, Tanzania. Fish assemblages were visually investigated using a belt transect method and the line-intercept technique was used to examine the substrate composition. 101 species of fish belonging to 31 families were recorded. Algal farming affected the associated fish fauna in terms of abundance, species richness, trophic identity and fish community composition. However, the impact differed between the lagoons. Algal farms in one lagoon hosted a more abundant and diversified fish fauna than controls, whereas farms in the other lagoon exhibited lower fish densities and similar species diversity compared to controls. The discrepancies between lagoons may be an effect of differences in farming intensity and character of the substratum.     

Modelling the impact of a La Niña event on a South West Pacific Lagoon

In view of increasing environmental awareness and biodiversity conservation, understanding the main forcing mechanism driving biogeochemical cycles in coral reefs and lagoon coastal areas is a priority. La Ni?a events cause unbalanced situations in the Equatorial Pacific and result in enhanced precipitation in South West Pacific coastal areas. We investigated the impact of heavy rainfalls during the 2008 La Ni?a event on the New Caledonia lagoon using a 3D coupled on-line hydrodynamic-biogeochemical model. Simulations and data showed that the whole lagoon was impacted by river inputs and stronger hydrodynamics, enhancing chlorophyll-a concentration by a factor between 1.7 and 1.9. The coupled model provided new insights into plume transport, highlighting that eastern plumes can be advected northwards or can reach the South West Lagoon, depending on the balance between regional, tide-induced, and wind-induced surface currents. It also provided a synoptic view of lagoon biogeochemical-hydrodynamic response, when remote sensing data are not available due to cloud coverage.     

Oxidative stress, genotoxicity and histopathology biomarker responses in mullet (Mugil cephalus) and sea bass (Dicentrarchus labrax) liver from Bizerte Lagoon (Tunisia)

The aim of the study was to evaluate the impact of environmental contaminants on oxidative stress, genotoxic and histopathologic biomarkers in liver of mullet (Mugil cephalus) and sea bass (Dicentrarchus labrax) collected from a polluted coastal lagoon (Bizerte Lagoon) in comparison to a reference site (the Mediterranean Sea). Antioxidant enzyme activities were lower in fish from the polluted site compared with fish from the reference site, suggesting deficiency of the antioxidant system to compensate for oxidative stress. DNA damage was higher in both fish species from the contaminated site indicating genotoxic effects. The liver histopathological analysis revealed alterations in fish from Bizerte Lagoon. Hepatocytes from both fish species featured extensive lipid-type vacuolation and membrane disruption. Results suggest that the selected biomarkers in both fish species are useful for the assessment of pollution impacts in coastal environments influenced by multiple pollution sources.     

The contribution of benthic macrofauna to the nutrient filter in coastal lagoons

Human activities in coastal areas have increased the occurrence of eutrophication events, especially in vulnerable ecosystems such as coastal lagoons. Although we have a general knowledge of the consequences of eutrophication in these ecosystems, some efforts need to be made to understand biotic feedbacks that could modify the response of the environment to nutrient enrichment. The plant-mediated 'coastal filter' is one of the main factors that determine lagoonal efficiency in processing excess nutrients. In this context, the present paper examined the relative contribution of benthic macrofauna to the 'coastal filter' of a Mediterranean lagoon. The analysis of macrofaunal assemblages in the Mar Menor lagoon led to a clear differentiation between shallow areas of net nutrient recycling and exportation and deeper areas of net retention. These differences enhance nutrient removal from the water column, thus increasing the ecosystem's resistance to eutrophication.     

Tidal flushing and wind driven circulation of Ahe atoll lagoon (Tuamotu Archipelago, French Polynesia) from in situ observations and numerical modelling

Hydrodynamic functioning and water circulation of the semi-closed deep lagoon of Ahe atoll (Tuamotu Archipelago, French Polynesia) were investigated using 1year of field data and a 3D hydrodynamical model. Tidal amplitude averaged less than 30cm, but tide generated very strong currents (2ms(-1)) in the pass, creating a jet-like circulation that partitioned the lagoon into three residual circulation cells. The pass entirely flushed excess water brought by waves-induced radiation stress. Circulation patterns were computed for climatological meteorological conditions and summarized with stream function and flushing time. Lagoon hydrodynamics and general overturning circulation was driven by wind. Renewal time was 250days, whereas the e-flushing time yielded a lagoon-wide 80-days average. Tide-driven flush through the pass and wind-driven overturning circulation designate Ahe as a wind-driven, tidally and weakly wave-flushed deep lagoon. The 3D model allows studying pearl oyster larvae dispersal in both realistic and climatological conditions for aquaculture applications.     

Sediment concentrations of heavy metals in the Homa Lagoon (Eastern Aegean Sea): Assessment of contamination and ecological risks

The concentrations of heavy metals and organic carbon in sediment of the Homa Lagoon which is one of the most productive lagoons and commercial important active fish trap in the Eastern Aegean Sea, were investigated in order to describe the temporal and spatial distributions of metals. These results were used to evaluate possible ecological risks that could be a problem for the environment of the lagoon in the future. Sediments were enriched with Cr, Ni and considered as heavily polluted per the SQG. The C_f of Ni and Cr were presented moderate level of contamination in this area. The C_d levels indicated moderate degree of contamination at station B, C, D and E due to agricultural drainage water, industrial and domestic wastewater, are transported by the Gediz River. Sediments from Homa Lagoon were most toxic for Ni due to exceedances of the TEL and PEL values.     

Transfer of organic contaminants to the Baltic in the Odra Estuary

This paper describes the transfer of organic contaminants to the sea, using PAHs (12 compounds) and PCBs (11 congeners) as examples, through a eutrophicated coastal lagoon (Szczecin Lagoon, on the Polish-German border). The transfer of contaminants study was based on their concentration in recent sediments (0-10 cm), in relation to different environmental conditions such as temperature, salinity, turbidity, oxygen and nutrients in water, hydrological conditions, organic carbon and biomarkers (pigments and their derivatives) in sediments. Results include the data obtained between 1994 and 2000, also those on before and afterwards the great flood in July 1997, at different stations in the Lagoon and the adjacent Pomeranian Bay. The results indicated that the eutrophic estuary of the shape of lagoon acts as an effective trap for the hydrophobic organic pollutants. The abundance and taxonomy of plankton as well as detritus derived from it play an important role in bonding the studied compounds. The salinity gradient in the lagoon has a significant influence upon deposition of the pollutants from the water column to the sediments and the residence time of the compounds there depends strongly on oxic-anoxic status of the sediments and the strength of interaction with sediments resulting from polarity, the type and stability of associates formed, as well as on hydrological conditions. We conclude that eutrophication in this area prevents pollution of the sea to some extent.     

Structure and taxonomic composition of free-living nematode and macrofaunal assemblages in a eutrophic subtropical harbour,Hong Kong

The spatial and seasonal taxonomic composition patterns of macrofauna and nematodes in a eutrophic subtropical harbour, previously suffered from sewage pollution, were studied in relation to a number of sediment parameters. In the polluted, inner-harbour area, levels of organic contents and heavy metals were high, whereas species number, abundance and diversity of nematodes and macrofauna were the lowest in comparison to the cleaner, outer-harbour area. Different taxonomic composition patterns of nematodes and macrofaunal assemblages were found between inner-harbour and outer-harbour area, which was highly correlated with sediment nutrient levels. Different responses of macrofaunal and nematode communities to sewage pollution suggested that macrofauna might be more tolerant than nematodes to eutrophic conditions due to their ability to modify the sediment. The present findings indicated the usefulness of studying both nematode and macrofaunal communities, in order to reveal different aspects of the benthic ecosystems in response to organic enrichment.     

Tidal dynamics of the Terminos Lagoon,Mexico: observations and 3D numerical modelling

The tidal circulation patterns in the Terminos Lagoon were studied based on the analysis of 1 year of measurements and numerical simulations using a baroclinic 3D hydrodynamic model, the MARS3D. A gauging network was installed consisting of six self-recording pressure–temperature sensors, a tide gauge station and two current profilers, with pressure and temperature sensors moored in the main lagoon inlets. Model simulations were validated against current and sea level observations and were used to analyse the circulation patterns caused by the tidal forcing. The numerical model was forced with eight harmonic components, four diurnal (K ₁, O ₁, P ₁, Q ₁) and four semi-diurnal (M ₂, S ₂, N ₂, K ₂), extracted from the TPX0.7 database. The tidal patterns in the study area vary from mixed, mainly diurnal in the two main inlets of the lagoon, to diurnal in its interior. The tidal residual circulation inside the lagoon is dominated by a cyclonic gyre. The results indicate a net flux from the southwest Ciudad del Carmen inlet (CdC) towards the northeast Puerto Real inlet (PtR) along the southern side of the lagoon and the opposite in the northern side. The results indicate two areas of strong currents in the vicinity of the inlets and weak currents inside the lagoon. The area of strong currents in the vicinity of the CdC inlet is larger than that observed in the PtR inlet. Nevertheless, the current analysis indicates that the highest current speeds, which can reach a magnitude of 1.9 m s^?1, occurred in PtR. A further analysis of the tide distortion in the inlets revealed that both passages are ebb dominated.     

Holocene salinity fluctuations of the East Korean lagoon related to sea level and precipitation changes

Detailed diatom records within core sediments from Maeho Lagoon along the Eastern coast of South Korea revealed that the ecological dynamics of the lagoon during the Holocene were associated with relative sea level and regional precipitation. Accelerator mass spectrometry (AMS) ¹⁴C dating indicates that sediment accumulation began prior to 8300 cal. year BP, and that the lagoon formed around 8000 cal. year BP. The salinity level of the lagoon increased until 5000 cal. year BP, and then decreased. Long‐term trends in salinity were dependent upon changes in sea level: periods of high salinity in the lagoon were generally coincident with periods of high sea levels along the east coasts of Korea and Japan. On the other hand, multicentennial‐scale fluctuations in diatom assemblages and magnetic susceptibility (MS) suggest that a 400 year fluctuation in salinity was regulated by changes in precipitation in the area of this lagoon. Changes in the westerly jet stream, controlled by variation in solar irradiance, had an important influence on precipitation volume in South Korea, suggesting that the patterns of the westerly jet stream fluctuate on a 400 year cycle.     

The impact of organic pollution on the macrobenthic fauna of Dubai Creek (UAE)

Dubai Creek is a tidal marine intrusion bisecting Dubai within the United Arab Emirates (UAE). The creek extends 14km inland from its opening into the Arabian Gulf, with a narrow lower creek channel leading to a lagoon section in the upper creek. The creek contains numerous sources of organic pollution including sewage outlet flows and boat waste. A survey of the creek was performed, assessing organic pollution, water properties, and the benthic macrofaunal community. The upper creek was heavily polluted with macrofauna communities commonly associated with organic pollution and eutrophication, while the lower creek contained low pollution and relatively healthy macrofauna communities. There is little net tidal flow of water within the creek and residence time in the lagoon is high, which may account for the high organic pollution levels. However, some evidence of the pollution effect moving into the lower creek was found. The results are considered in light of current and historic organic loading within the creek and future developments in the area.     

Local sea level change scenarios for the end of the 21st century and potential physical impacts in the lower Ria de Aveiro (Portugal)

Sea level change is an important consequence of climate change due to its impact on society and ecosystems. Analyses of tide-gauge data have indicated that the global sea level has risen during the 20th century and several studies predict that the mean sea level will continue to rise during the 21st century, intensifying coastal hazards worldwide. In Portugal, the Ria de Aveiro is expected to be one of the regions most affected by sea level change.The main aim of this study is to evaluate the potential impacts of the mean sea level change on the hydrodynamics and morphodynamics of the Ria de Aveiro. With this purpose, local mean sea level change was projected for the period 2091-2100 relative to 1980-1999, for different Special Report on Emission Scenarios (SRES) scenarios developed by the Intergovernmental Panel on Climate Change (IPCC). These projections revealed an increase in the mean sea level between 0.28 m under scenario B1 and 0.42 m under scenario A2.The results obtained for sea level rise scenario A2 projection were used to force the morphodynamic model MORSYS2D, previously implemented for the Ria de Aveiro. The modelling results were compared with model forecasts for the present sea level. The residual sediment transport and its balance at the lagoon inlet were computed and analysed for both situations. While the residual sediment transport is generally seaward, sediments tend to deposit inside the inlet due to the weak sediment transport at its mouth. The direction of the residual flux will not change with the sea level rise, but sediment fluxes will intensify, and accretion inside the inlet will increase.The rise in mean sea level will also affect the lagoon hydrodynamics. The tidal prism at the lagoon mouth will increase by about 28% in spring tide. In the lower lagoon only a slight increase of the tidal asymmetry is predicted.     

Effects of fish farm waste on Posidonia oceanica meadows: synthesis and provision of monitoring and management tools

This paper provides a synthesis of the EU project MedVeg addressing the fate of nutrients released from fish farming in the Mediterranean with particular focus on the endemic seagrass Posidonia oceanica habitat. The objectives were to identify the main drivers of seagrass decline linked to fish farming and to provide sensitive indicators of environmental change, which can be used for monitoring purposes. The sedimentation of waste particles in the farm vicinities emerges as the main driver of benthic deterioration, such as accumulation of organic matter, sediment anoxia as well as seagrass decline. The effects of fish farming on P. oceanica meadows are diverse and complex and detected through various metrics and indicators. A safety distance of 400 m is suggested for management of P. oceanica near fish farms followed by establishment of permanent seagrass plots revisited annually for monitoring the health of the meadows.     

Benthic foraminifera distribution in a tourist lagoon in Rio de Janeiro, Brazil: a response to anthropogenic impacts

Rodrigo de Freitas Lagoon, located in the Rio de Janeiro City, receives several types of polluted discharges. The knowledge of the sediment microfauna correlated with heavy metal and organic matter concentrations could supply important data about the conditions of the lagoon. The benthic foraminiferal assemblage presented larger diversity and more abundant samples in the lagoon entrance than in the inner area. The Ammonia tepida - Elphidiumexcavatum foraminiferal assemblage is characterized by dwarf, corroded and weak organisms. Agglutinated species were found only near the entrance. Low abundance values and sterility of five samples in the inner area (north/northeast) can be caused by high levels of heavy metals and organic matter. A. tepida shows negative correlation with increasing heavy metals values. PAHs and coprostanol high indexes, and the absence or low presence of microfauna in samples around the lagoon margin confirm illegal flows from gas stations and domestic sewage.