Molecular diversity of Enteromorpha from the coast of Yantai: a dual-marker assessment

We collected nine Enteromorpha specimens from the coast of Yantai and evaluated their diversity based on analyses of their ITS （internal transcribed spacer） and 5S rDNA NTS （non-transcribed spacer） sequences. The ITS sequences showed slight nucleotide divergences between Enteromorpha linza and Enteromorpha prolifera. In contrast, multiple highly variable regions were found in the ITS region of Enteromorpha flexuosa. In general, there were more variable sites in the NTS region than in the ITS region in the three species. The variations in 5S rDNA NTS sequences indicated that the molecular diversity of Enteromorpha from the coast of Yantai is very high. However, a phylogenetic tree constructed using 5S rDNA NTS sequence data indicated that genetic differences were not directly related to geographical distribution.     

Erratum to: Purification and characterization of iron-cofactored superoxide dismutase from Enteromorpha linza

<正>Erratum to:Chinese Journal of Oceanology and Limnology Vol.31 No.6,P.1190-1195,2013http://dx.doi.org/10.1007/s00343-013-3049-3The supporting grant information on the footnote of the original version of this article needs to be altered and updated.The new information is given below.     

Seasonal variations in fouling diatom communities on the Yantai coast

Fouling diatoms are a main component of biofilm,and play an important role in marine biofouling formation. We investigated seasonal variations in fouling diatom communities that developed on glass slides immersed in seawater,on the Yantai coast,northern Yellow Sea,China,using microscopy and molecular techniques. Studies were conducted during 2012 and 2013 over 3,7,14,and 21 days in each season. The abundance of attached diatoms and extracellular polymeric substances increased with exposure time of the slides to seawater. The lowest diatom density appeared in winter and the highest species richness and diversity were found in summer and autumn. Seasonal variation was observed in the structure of fouling diatom communities. Pennate diatoms Cylindrotheca,Nitzschia,Navicula,Amphora,Gomphonema,and Licmophora were the main fouling groups. Cylindrotheca sp. dominated in the spring. Under laboratory culture conditions,we found that Cylindrotheca grew very fast,which might account for the highest density of this diatom in spring. The lower densities in summer and autumn might result from the emergence of fouling animals and environmental factors. The Cylindrotheca sp. was identified as Cylindrotheca closterium using18 S rDNA sequencing. The colonization process of fouling diatoms and significant seasonal variation in this study depended on environmental and biological factors. Understanding the basis of fouling diatoms is essential and important for developing new antifouling techniques.     

Temporal and spatial variations in the distribution of macroalgal communities along the Yantai coast,China

To explore the impact of environmental variables on macroalgal communities, their temporal and spatial distributions were examined along the Yantai coast, China between April 2010 and March 2011. Macroalgae sampling was conducted monthly at four sites along the coast： Jiahe River estuary, Zhifu Island, Fisherman＇s Wharf, and Yangma Island. The species composition and abundance, and their relationship with environmental variables were assessed. Along the Yantai coast, 35 macroalgae species were identified, including 24 Rhodophyta spp., 7 Chlorophyta, and 4 Phaeophyta spp. Highest species numbers were recorded in the summer at all sampling sites, except in the Jiahe River estuary. Macroalgae biomass was the greatest in the summer. Year-round, the highest species number and dry biomass recorded at Fisherman＇s Wharf and Yangma Island was attributed to the substrate type. In summer, Ulva pertusa Kjellman was the dominant species identified along the Yantai coast, which indicates a risk ofmacroalgae blooms. Our results show that seawater temperature and nutrients appear to significantly affect the temporal and spatial patterns of macroalgal abundance along the Yantai coast. The effects of environmental variables on the macroalgae on the Yantai coast need further study.     

Molecular phylogenetic analysis of attached Ulvaceae species and free-floating Enteromorpha from Qingdao coasts in 2007

Based on the sequence data of the nuclear ribosomal DNA internal transcribed spacer(ITS) 1,5.8 S,and ITS 2,the molecular phylogeny was analyzed on Ulvaceae species collected from Qingdao coasts in summer of 2007,including 15 attached Ulva and Enteromorpha samples from 10 locations and 10 free-floating Enteromorpha samples from seven locations.The result supported the monophyly of all free-floating Enteromorpha samples,implying the unialgal composition of the free-floating Enteromorpha,and the attached Ulvaceae species from Qingdao coasts were grouped into other five clades,suggesting that they were not the biogeographic origin of the free-floating Enteromorpha in that season.     

Nematode diversity of Qingdao coast inferred from the 18S ribosomal RNA gene sequence analysis

The 18S ribosomal DNA gene （18S rDNA） sequences （approxtmately 1300 bp in length） were amplified from the DNA extracted from the free-living marine nematodes collected from the inter-tidal sediment of Qingdao coast in bulk with nematode specific primers. The PCR products were cloned, re-amplified, digested with Rsa I and Hin61 restriction endonucleases and separated in agarose gel. Among 17 restriction fragment length types, types 1, 2 and 6 covered 61.2%, 14.4% and 9.3% of the clones analyzed, respectively, while the remaining 14 only covered 21 clones, which accounted for 15.1% of the total. Twenty-four representative clones were sequenced and phylogenetically analyzed by referring to those currently available in RDP and GenBank databases. Although it was hard to assign these sequences to known species or genera due to the lack of the 18S rDNA sequence data of known marine free-living nematodes, the obtained sequences were assigned to the nematodes of Adenophorea. Among them, twelve sequences were close to Pontonema vulgate and Adoncholaimus sp., four to Daptonema procerus and two （identical） to Enoplus brews. Our results showed that free-living marine nematode diversities could be determined by PCR retrieving and analysis of the 18S rDNA sequences and an 18S rDNA sequence could be assigned to a species or a genus only if the 18S rDNA sequences of the free-living marine nematodes were accumulated to some extent.     

Erratum to: Arctic multiyear sea ice variability observed from satellites: a review

Journal of Oceanology and Limnology - The affiliations of the authors of this article unfortunately contained a mistake.     

Comparison in diversity of eukaryotic algae in surface sediments from different functional sea areas of Qingdao coast,the Yellow Sea,China: a metabarcoding approach

Journal of Oceanology and Limnology - Surface sediment samples were collected in three different functional sea areas in Qingdao coast, East China, including the inner Jiaozhou Bay, the Laoshan...     

Chlorophenols in marine organisms from the southern coast of Hangzhou Bay,China, and an assessment of risks posed to human health

The composition of chlorophenols in marine organisms from the southern coast of Hangzhou Bay, China, was analyzed and the health risks posed to humans assessed. A total of 19 chlorophenols from 16 types of marine organism were analyzed across nine survey sections in Hangzhou Bay. The chlorophenols were analyzed by gas chromatography-mass spectrometry using a DB-5MS quartz capillary column. The concentrations of monochlorophenol, dichlorophenol, trichlorophenol, tetrachlorophenol, and pentachlorophenol ranged from below the detection limit(ND) to 132 μg/kg, ND–51.0 μg/kg, ND–42.5 μg/kg, ND–69.0 μg/kg, and ND–9.06 μg/kg, respectively. Additionally, concentration differences between each type of chlorophenol were not significant( P 0.05). However, significant differences were found between monochlorophenol( F =8.13, P 0.01) and total chlorophenol(F =5.19, P 0.01) concentrations. As the noncarcinogenic risk indices were 0.1(10-5 –10-2) for all of the organisms, no high risk was posed by 2-chlorophenol, 2,4-dichlorophenol, 2,4,6-trichlorophenol, 2,4,5-trichlorophenol, 2,3,4,6-tetrachlorophenol, and pentachlorophenol to humans consuming marine organisms from the study area. Furthermore, the carcinogenic risks posed by 2,4,6-trichlorophenol and pentachlorophenol were lower than limits set by the International Commission on Radiological Protection and the US Environmental Protection Agency. However, the noncarcinogenic and carcinogenic risks posed by chlorophenols in marine organisms from four of the survey sections(Sizaopu, Niluoshan, Longshan Town and Xinhong zha) were higher than the other survey sections.     

Biodegradation of Enteromorpha Polysaccharides by Intestinal Micro-Community from Siganus oramin

Micro-communities are supposed to have more potential functions of biodegradation of polysaccharides than single strain; however, the intestinal micro-communities involved in the biodegradation of Enteromorpha polysaccharides(EP) were seldom reported. In order to obtain the EP-degrading micro-community, the intestines of Siganus oramin was obtained to isolate the micro-communities, which were enriched by 0.3% of EP as the sole carbon source. A stable micro-community with EP degradative capability was achieved after seven generations of subculture, named H1. Results showed that H1 was able to degrade 75% of EP within 24 hours, and the activity of EP lyases reached 500 U m L~(-1) in 32 hours. With denaturing gradient gel electrophoresis(DGGE) and 16 S r RNA gene clone library analysis, ten bacteria closely related to Marinomonas pontica, Microbacterium sp., Leucobacter chironomi, Cyclobacterium sp., Algoriphagus winogradskyi, Pseudoalteromonas sp. and Vibrio sp. were determined. Furthermore, compared with the DGGE bands sequence and the clone library analysis, the dominant bacteria of the EP-biodegrading micro-community were Pseudoalteromonas sp. and Vibrio sp., with the respective proportion of 38% and 46%, and they should play an important role in EP degradation together with other degrading bacteria in the micro-community H1.     

A rapid assessment of Scleractinian and non-Scleractinian coral growth forms along the Saudi Arabian coast,Red Sea

In this study we assessed the current status of coral reefs along the Saudi Arabian coast of the Red Sea. Among the three growth forms of Acroporid corals, the branching forms were found to dominate in the Farassan Islands(44.55%±11.10% cover) followed by tabular forms in the Doga Islands(ranging between 18%±6.47% and 18.30%±9.47% cover). Digitate forms were rarely found along the coast except at Maqna. Among the five growth forms of non-Acroporid corals, we observed maximum cover of branching forms in the Yanbu offshore area(58.89%±15.11% cover) followed by the Jeddah coast(24.76%±14.04% cover). The Millepora spp., a non-Scleractinian coral, was abundant at all the near-shore sites, such as Jeddah(10.70%±8.21%) and Al-Wajh(9.81%±6.69%). The live coral cover(including both Scleractinian and non-Scleractinian corals) of Saudi Red Sea coast was seen to be higher in the north and gradually decrease towards the south. Principal Component analysis showed that the contribution of Acroporid corals was greater in the southern region than in the northern and middle regions, but vice-versa in the case of non-Acroporid corals. Bray-Curtis cluster analysis categorized all the study sites into two major clusters with 60% similarity. Among them, one cluster-forming sites from Maqna to Masturah(Northern region) and the second one comprised the middle and southern regions(Jeddah to Farassan Islands), and one outlier Rabigh.     

Occurrence of double parasitism on black-barred halfbeak fish from the southeast coast of India

A double parasitism (isopod Cymothoidae and copepod Pennellidae) on black-barred halfbeak fish, Hemiramphus far, was recorded from Pazhayar coastal waters (southeast coast of India) during September 2008. This is the first report from this region and the infection is discussed in relation to environmental and biological parameters.