Ecological status of seagrass ecosystems: An uncertainty analysis of the meadow classification based on the Posidonia oceanica multivariate index (POMI)

Quantifying the uncertainty associated with monitoring protocols is essential to prevent the misclassification of ecological status and to improve sampling design. We assessed the Posidonia oceanica multivariate index (POMI) bio-monitoring program for its robustness in classifying the ecological status of coastal waters within the Water Framework Directive. We used a 7-year data set covering 30 sites along 500 km of the Catalonian coastline to examine which version of POMI (14 or 9 metrics) maximises precision in classifying the ecological status of meadows. Five factors (zones within a site, sites within a water body, depth, years and surveyors) that potentially generate classification uncertainty were examined in detail. Of these, depth was a major source of uncertainty, while all the remaining spatial and temporal factors displayed low variability. POMI 9 matched POMI 14 in all factors, and could effectively replace it in future monitoring programs.     

Uncertainty analysis along the ecological quality status of water bodies: the response of the Posidonia oceanica multivariate index (POMI) in three Mediterranean regions

Uncertainty analyses allow the identification and quantification of the factors that contribute to the potential misclassification of the ecological status of water bodies, helping to improve the sampling design used in monitoring. Here we used a Posidonia oceanica multivariate index (POMI) bio-monitoring dataset covering a total of 81 sites distributed throughout 28 water bodies from the coast of Catalonia, Balearic Islands and Croatia to determine the levels of uncertainty associated with each region and how they change according to the quality status of water bodies. Overall, variability among sites (meadows) within water bodies was the factor that generated the greatest risk of misclassification among the three regions, within which the Balearic Islands had the lowest uncertainty, followed by Croatia and Catalonia. When water bodies classified in good/high quality were separated from those in moderate/poor status classes, we found that the latter displayed higher levels of uncertainty than the former.     

Benthic primary producers--a neglected environmental problem in Mediterranean maricultures?

Marine fish farming is increasing rapidly in the Mediterranean and in contrast to the Atlantic the coastal zone in the Mediterranean is characterized by clear waters with high transparency. This allows benthic primary producers such as the slow-growing seagrass Posidonia oceanica to grow at large depths at locations suitable for fish farming and generating a conflict between the conservation of these meadows and the growth of aquaculture operations in the Mediterranean. In this paper we review the current knowledge on environmental interactions between fish farming and benthic primary producers with particular focus on P. oceanica, as this seagrass is a key component along Mediterranean coasts. The recovery times of P. oceanica are very long, in the order of centuries, and losses of this species are thus considered to be irreversible at managerial time scales.     

Effects of fish farm waste on Posidonia oceanica meadows: synthesis and provision of monitoring and management tools

This paper provides a synthesis of the EU project MedVeg addressing the fate of nutrients released from fish farming in the Mediterranean with particular focus on the endemic seagrass Posidonia oceanica habitat. The objectives were to identify the main drivers of seagrass decline linked to fish farming and to provide sensitive indicators of environmental change, which can be used for monitoring purposes. The sedimentation of waste particles in the farm vicinities emerges as the main driver of benthic deterioration, such as accumulation of organic matter, sediment anoxia as well as seagrass decline. The effects of fish farming on P. oceanica meadows are diverse and complex and detected through various metrics and indicators. A safety distance of 400 m is suggested for management of P. oceanica near fish farms followed by establishment of permanent seagrass plots revisited annually for monitoring the health of the meadows.     

A new methodology based on littoral community cartography dominated by macroalgae for the implementation of the European Water Framework Directive

Macroalgae is a biological key element for the assessment of the ecological status in coastal waters in the frame of the European Water Framework Directive (WFD, 2000/60/EC). Here we propose a methodology for monitoring water quality based on the cartography of littoral and upper-sublittoral rocky-shore communities (CARLIT, in short). With the use of spatial databases, GIS, and available information about the value of rocky-shore communities as indicators of water quality, it is possible to obtain an environmental quality index representative of the ecological status of rocky coasts. This index, which completely fulfils the requirements of the WFD, is expressed as a ratio between the observed values in the sector of shore that is being assessed and the expected value in a reference condition zone with the same substrate and coastal morphology (Ecological Quality Ratio, EQR). The application of this index to the coast of Catalonia (North-Western Mediterranean) is presented.     

A habitat-specific fish-based approach to assess the ecological status of Mediterranean coastal lagoons

A habitat approach was promoted in the framework of ecological status assessment of transitional waters, assuming the importance of habitat heterogeneity to the overall system status. The approach was applied to the use of fish-based multimetric indices by adapting them to seagrass and marsh habitats in the Venice lagoon, Italy, through selection of appropriate metrics and reference conditions. While for marsh habitats, no clear patterns resulted, the index response for seagrass was consistent with the habitat degradation and loss recorded in the lagoon between 2002 and 2005 and with the higher habitat disturbance in southern and central lagoon sub-basins. The assessment of individual habitats is presented as a first step in the process of evaluating the overall condition of a Mediterranean lagoon environment, which should also take account of the diversity of habitats and their availability within the system to properly define an overall index of ecological status.     

Urban seagrass: status of Posidonia oceanica facing the Genoa city waterfront (Italy) and implications for management

A system of five adjacent Posidonia oceanica meadows facing the waterfront of Genoa city (Ligurian Sea, NW Mediterranean) was investigated over different spatial scales (meters-kilometers) using three environmental indices: conservation index (CI), substitution index (SI) and phase-shift index (PSI). CI revealed differences mostly at large spatial scale, distinguishing the poor condition of the meadows closest to Genoa centre and harbour from the comparatively healthy condition of the farthest meadows. SI showed differences mostly at small spatial scale (i.e., within meadows), suggesting the influence of local factors in the re-colonisation of regressed meadows by the seagrass Cymodocea nodosa and/or the invasive alga Caulerpa racemosa. Mapping of PSI showed that the meadows closest to Genoa centre and harbour have undergone a nearly total phase shift and have no real potential for recovery: attempts to re-establish P. oceanica there might be a waste of time and money. On the contrary, the meadows farthest from Genoa centre and harbour showed a comparatively low level of phase shift and could still fully recover given specific management actions.     

Benthic input rates predict seagrass (Posidonia oceanica) fish farm-induced decline

Fish farms represent a growing source of anthropogenic disturbance to benthic communities, and efficient predictors of such impacts are urgently needed. We explored the effects of fish farm benthic organic and nutrient inputs on the population dynamics of a key seagrass species (Posidonia oceanica) in four Mediterranean deep meadows adjacent to sea bream and sea bass farms. We performed two annual plant censuses on permanent plots at increasing distance from farms and measured benthic sedimentation rates around plots. High shoot mortality rates were recorded near the cages, up to 20 times greater than at control sites. Recruitment rates increased in variability but could not compensate mortality, leading to rapid seagrass decline within the first 100 m from cages. Seagrass mortality increased with total sedimentation rates (K=0.55, p<0.0002), and with organic matter (K=0.50, p=0.001), total nitrogen (K=0.46, p=0.002) and total phosphorus (K=0.56, p<3.10(-5)) inputs. P. oceanica decline accelerated above a phosphorus loading threshold of 50mg m(-2)day(-1). Phosphorus benthic sedimentation rate seems a powerful predictor of seagrass mortality from fish farming. Coupling direct measurements of benthic sedimentation rates with dynamics of key benthic species is proposed as an efficient strategy to predict fish farm impacts to benthic communities.     

An intercalibration of classification metrics of benthic macroinvertebrates in coastal and transitional ecosystems of the Eastern Mediterranean ecoregion (Greece)

Three coastal and three lagoonal sites located in Greece (Eastern Mediterranean) were selected to test and intercalibrate classification methods developed for benthic invertebrates ecological quality assessments. These methods were developed for the purposes of the European Water Framework Directive which is a European legislation adopted for the protection and improvement of the coastal and transitional waters. However, through testing these methods, this work addresses in general the issue of determining and comparing the ecological status of the coastal and transitional macrobenthic communities in Eastern Mediterranean ecosystems. Among methods tested were the biotic indices AMBI and BENTIX, the multivariate method M-AMBI and the biomass size structure index ISD in lagoonal sites only. ISD index is a rather new method developed especially for transitional ecosystems and in this contribution its performance is intercalibrated with the other benthic classification metrics. Comparison and intercalibration of the indices results in assessing the ecological quality status (EQS) are presented graphically and statistically performing the Kappa analysis. Results of the comparison and the indices' performance are evaluated based on the knowledge of the sites' environmental condition and baseline studies. Based on an extended dataset of coastal and transitional ecosystems benthic invertebrates, an evaluation of each index performance and effectiveness is attempted through an insight and comparative analysis of each methods' structure and design. Results showed that in these Eastern Mediterranean coastal sites the BENTIX index seems to give a more biologically relevant classification and gives a higher confidence level regarding the classification compared to the other indices. In the coastal areas AMBI showed a tendency for the "good" class classification, while the factorial M-AMBI gave more consistent results with the BENTIX. In the lagoonal sites the biotic indices tested were not proved efficient enough and the biomass based ISD index proved more appropriate for these ecosystems. AMBI showed the highest agreement with the ISD which is due to the better performance of this index in the slightly and moderately polluted lagoons, compared to the other indices. However, AMBI failed to classify the polluted lagoon, in which case the BENTIX gave a more relevant classification.     

A zone-specific fish-based biotic index as a management tool for the Zeeschelde estuary (Belgium)

Fish-based indices monitor changes in surface waters and are a valuable aid in communication by summarising complex information about the environment (Harrison and Whitfield, 2004). A zone-specific fish-based multimetric estuarine index of biotic integrity (Z-EBI) was developed based on a 13 year time series of fish surveys from the Zeeschelde estuary (Belgium). Sites were pre-classified using indicators of anthropogenic impact. Metrics showing a monotone response with pressure classes were selected for further analysis. Thresholds for the good ecological potential (GEP) were defined from references. A modified trisection was applied for the other thresholds. The Z-EBI is defined by the average of the metric scores calculated over a one year period and translated into an ecological quality ratio (EQR). The indices integrate structural and functional qualities of the estuarine fish communities. The Z-EBI performances were successfully validated for habitat degradation in the various habitat zones.     

An approach to the intercalibration of benthic ecological status assessment in the North Atlantic ecoregion, according to the European Water Framework Directive

The European Water Framework Directive (WFD) establishes a framework for the protection and improvement of transitional and coastal waters; its final objective is to achieve at least 'good water status' for all waters, by 2015. The WFD requires Member States (MSs) to assess the Ecological Status (ES) of water bodies. This assessment will be based upon the status of the biological, hydromorphological and physico-chemical quality elements, by comparing data obtained from monitoring networks to reference (undisturbed) conditions, and then deriving an Ecological Quality Ratio (EQR). One of the biological quality elements to be considered is the benthic invertebrate component and some structural parameters (composition, diversity and disturbance-sensitive taxa) must be included in the ES assessment. Following these criteria, several approaches to benthic invertebrate assessment have been proposed by MSs. The WFD requires that these approaches are intercalibrated. This contribution describes the comparison of the different methodologies proposed by United Kingdom, Spain, Denmark and Norway. Results show a high consistency between the approaches, both with regard to determining the EQR and boundary settings for the ES.     

Angiosperms (seagrass) within the EU water framework directive: a UK perspective

Taxonomic composition, the presence of disturbance-sensitive species and abundance are attributes for monitoring the status of marine angiosperms; a biological quality element required for assessment of environmental condition under the Water Framework Directive (WFD). Their relevance for defining the ecological status of UK water bodies and the establishment of reference conditions for these attributes are described. Founded on quantitative measurements of these attributes, a set of metrics has been developed for monitoring and assessment of the only truly marine angiosperms, seagrass. The proposed metrics are presented and tested against a variety of littoral and sublittoral UK seagrass beds. In combination they express the cumulative response of marine angiosperms to different levels of anthropogenic disturbance.     

A revisitation of TRIX for trophic status assessment in the light of the European Water Framework Directive: application to Italian coastal waters

The trophic status classification of coastal waters at the European scale requires the availability of harmonised indicators and procedures. The composite trophic status index (TRIX) provides useful metrics for the assessment of the trophic status of coastal waters. It was originally developed for Italian coastal waters and then applied in many European seas (Adriatic, Tyrrhenian, Baltic, Black and Northern seas). The TRIX index does not fulfil the classification procedure suggested by the WFD for two reasons: (a) it is based on an absolute trophic scale without any normalization to type-specific reference conditions; (b) it makes an ex ante aggregation of biological (Chl-a) and physico-chemical (oxygen, nutrients) quality elements, instead of an ex post integration of separate evaluations of biological and subsequent chemical quality elements. A revisitation of the TRIX index in the light of the European Water Framework Directive (WFD, 2000/60/EC) and new TRIX derived tools are presented in this paper. A number of Italian coastal sites were grouped into different types based on a thorough analysis of their hydro-morphological conditions, and type-specific reference sites were selected. Unscaled TRIX values (UNTRIX) for reference and impacted sites have been calculated and two alternative UNTRIX-based classification procedures are discussed. The proposed procedures, to be validated on a broader scale, provide users with simple tools that give an integrated view of nutrient enrichment and its effects on algal biomass (Chl-a) and on oxygen levels. This trophic evaluation along with phytoplankton indicator species and algal blooms contribute to the comprehensive assessment of phytoplankton, one of the biological quality elements in coastal waters.     

Ecological Quality Status of the soft-bottom communities on the algerian coast: General patterns and diagnosis

Between 1995 and 2001, the soft-bottom communities along the 1180 km of the Algerian coast were sampled in nine gulfs and 12 harbours, providing a total of 655 samples. Eight macrozoobenthos-based biotic indices (S, N, H′, BQI, AMBI, BENTIX, BO2A and ITI) were selected to describe the general patterns of the coastal water quality status and to establish a quality diagnosis for the different zones subjected to anthropogenic pressure (e.g., harbour construction, industrial and urban pollution). Reference values were determined for each of the eight indices selected by analyzing the indices’ parameter distribution. The Ecological Quality Ratio (EQR) was estimated for each index, resulting in an EQR Mean Score and an EQR Bad Score. From these EQR, we defined an EQS for each sample. The agreement between these EQS was analysed using the Kappa method in order to propose a survey strategy for the Algerian coastal waters that would take into account the soft-bottom biological compartment. The results clearly indicate that high and good quality assessments are prevalent in the gulfs, while quality assessments in harbours vary greatly from bad to good. The effect of pollution observed in the harbours can be classified in two main groups, according to when they were constructed and their relative degree of openness to the sea, which permits better water circulation and probably dilutes the pollution.     

Efficacy of adapted estuarine fish-based multimetric indices as tools for evaluating ecological status of the marine environment

The assessment of ecological status of marine fish communities required by the marine strategy framework directive (MSFD) emphasises the need for fish-based ecological indices in marine waters. In this study we adapt five estuarine multimetric indices to the marine environment and apply them in three types of substrates, analysing the metrics responsible for the obtained patterns of ecological status. The results show inefficiency of the community degradation index (CDI) and the biological health index (BHI) in ecological status assessment and disagreement between the estuarine biotic integrity index (EBI), the estuarine fish community index (EFCI) and the transitional fish classification index (TFCI). Analysis of individual metrics suggests lack of representativeness and consideration for the particularities of each substrate’s typical fish communities. None of the tested indices were efficient on the marine environment, urging the need for new marine indices that account for differences between types of substrate and depth.     

Assessing reference conditions and physico-chemical status according to the European Water Framework Directive: a case-study from the Basque Country (Northern Spain)

The European Water Framework Directive requires the development of new and accurate methodologies, addressing the assessment of the physico-chemical status of transitional and coastal waters; these are considered by the Directive as the supporting elements for the final evaluation of the Ecological Quality Status.

This contribution develops new approaches in the determination of the physico-chemical status, solving some problems detected in previous contributions, i.e.: (a) fitting the classification of water bodies and typologies, by means of the stretching of the typologies, according to the natural salinity gradient of types; (b) defining reference conditions, based upon the new approach to typologies, (c) proposing accurate multivariate methodologies, in determining the physico-chemical status of the transitional and coastal waters, based upon the defined typologies and references; and (d) discussion of the results obtained by reference to methodological aspects and water quality evolution in the Basque Country, Spain (as a case-study), during the last decade.     

Effects of climate, invasive species and anthropogenic impacts on the growth of the seagrass Posidonia oceanica (L.) Delile in Liguria (NW Mediterranean Sea)

Eight shallow water Posidonia oceanica meadows were sampled in June 1999 along 300 km of the Ligurian coast and were compared through shoot density and lepidochronology. The growth of the seagrass was examined in the light of climate fluctuations and local stresses, colonisation by alien, invasive alga Caulerpa taxifolia, and effects of the oil spill from the tanker "Haven", and other anthropogenic impacts. Both shoot density and lepidochronology pointed to a generalised state of regression of all the meadows. The analysis of long-term growth curves of the rhizomes showed a positive trend parallel to the increase of air temperature. Two main groups of meadows were individuated on the basis of growth curve similarity. The first included four meadows, namely Ventimiglia, Imperia, Noli and Prelo, that were characterised by average values of rhizome growth of 8-9.1 mmyear(-1) and shoot density greater than 200 shootsm(-2). Although the Imperia meadow was the only one where the alien invasive alga C. taxifolia was found, it did not show differences for rhizome growth in comparison to the other meadows. The second group was formed by meadows that had suffered past anthropogenic impacts: Arenzano and Monterosso al Mare. They showed higher rhizome growth rates (9.4-10.6 mmyear(-1)) and shoot densities between 200 and 100 shootsm(-2). At Arenzano, where "Haven" oil was stranded in April 1991, no rhizome older than 8 years was found, thus confirming the shoot mortality induced by the oil spill event. The two last meadows exhibited growth curves very different from all the others: Portovenere, is a shallow meadow where P. oceanica merely survives in an extremely degraded situation with highest rhizome growth rate (12 mmyear(-1)), the other, Riva Trigoso, is the only meadow implanted on rock and had the lowest growth rates (7.1 mm year(-1)).     

Development of a fish-based index to assess the ecological quality of transitional waters: The case of French estuaries

The Water Framework Directive requires the assessment of the ecological status of transitional waters considering the fish component. An original methodology, based on a pressure-impact approach, was established to develop a multimetric fish-based index to characterize the ecological quality of French estuaries. An index of contamination, based on the chemical pollution affecting aquatic systems, was used as a proxy of anthropogenic pressure. The fish metric selection was based on their response to disturbances tested via statistical models (generalized linear models) taking into account sampling strategy and estuarine features. Four metrics, for which discriminating responses to level of pressure were demonstrated, were retained to constitute the estuarine multimetric fish index. This new tool appeared particularly relevant to detect the contamination effects on fish communities in estuaries. It could help managers to take decisions in order to maintain or reach the good status required by the Water Framework Directive for 2015.