The Role of Protistan Microzooplankton in the Upper San Francisco Estuary Planktonic Food Web: Source or Sink?

Decline of native pelagic species in estuarine systems is an increasing problem, especially for native fishes in the San Francisco Estuary and Delta (SFE-D). Addressing these losses depends on understanding trophodynamics in the food web that supports threatened species. We quantified the role of microzooplankton (heterotrophic–mixotrophic protists <200 μm) in the food web of the upper SFE-D. We sampled protist plankton abundance and composition at two sites (Suisun Bay and Grizzly Bay) approximately monthly from February 2004 to August 2005 and conducted dilution experiments during spring and summer of both years in Suisun Bay. Heterotrophs dominated the protist community in Suisun Bay and Grizzly Bay, particularly in the <20 μm size range, and peaks in protistan microzooplankton biomass were associated with high phytoplankton biomass. In both years, microzooplankton grazing rates were high (0.5–0.7 day⁻¹) during the spring and lower (~0.2 day⁻¹) during summer. Phytoplankton growth rates peaked in April 2004 (~0.7 day⁻¹) but were much lower (<0.1 day⁻¹) in spring 2005, despite relatively high abundance. Thus, microzooplankton grazing consumed as much as 73% of phytoplankton standing stock during spring and ~15% of standing stock during summer of both years. Combined with earlier results, we conclude that microzooplankton can be important mediators of carbon and energy flow in the upper SFE-D and may be a “source” to the metazoan food web.     

Food Web Structure and Habitat Connectivity in Fish Estuarine Nurseries—Impact of River Flow

River flow variability is known to influence estuarine production, yet knowledge on its effect upon estuarine food webs dynamics is still scarce. Stable carbon and nitrogen isotopes were used to assess the effect of river flow in the connectivity and food web interactions between the two main fish nursery areas of the Tagus estuary. The aims of the present work were to investigate the seasonal variation in food web structure and the exchange rate of individuals of marine juvenile fish among estuarine nurseries, to compare the spring of a rainy year (2001) with that of an average year (2000), and to investigate the impact of the winter floods of 2001. A low level of connectivity was observed for the fish species that use these areas as nurseries. In low river flow conditions, two isotopically distinct food webs were established in each nursery area. These food webs were very sensitive to small variations in the freshwater input. Winter floods seem to disrupt the localized food webs that are established in low river flow periods, leading to the re-establishment of a wider food web. While in rainy years this wide food web is maintained until spring, in average years the food web undergoes fragmentation into two localized and isotopically distinctive food webs. The increase in frequency of droughts due to climate change should lower the connectivity of the estuarine fish nurseries food webs, causing habitat fragmentation and consequent loss in complexity and resilience.     

A Before–After–Control–Impact Analysis of the Effects of a Mississippi River Freshwater Diversion on Estuarine Nekton in Louisiana, USA

Since 1991, the Caernarvon Freshwater Diversion has been reintroducing Mississippi River water into a previously hydrologically isolated estuary in an effort to restore wetlands. To determine the effect of freshwater inflow on estuarine nekton community structure, a Before?CAfter?CControl?CImpact study design was applied. As a result of the opening, salinities in the impact area decreased, and the nekton community structure in the estuary changed significantly. Species of economical or ecological importance either increased in biomass or exhibited no response to the opening of the diversion. Higher abundances of small fish were observed in the area receiving freshwater flow, which is an indication that the area serves as a refuge from large marine predators. Because a salinity gradient was established, as opposed to a uniform but lower salinity regime, aquatic habitat was available to nekton species from a wide spectrum of salinity tolerances.     

Response to “Comment on ‘Otolith Microchemistry Reveals Substantial Use of Freshwater by Southern Flounder in the Northern Gulf of Mexico’” by Pedro Morais

Lowe et al. (Estuar Coast 34:630–639, 2011) used Sr/Ca in the otoliths of juvenile southern flounder (Paralichthys lethostigma) to demonstrate the importance of low-salinity habitats in the northern Gulf of Mexico during early life. While otolith cores indicated that most southern flounder originated in high-salinity environments (elevated Sr/Ca in otolith core) and moved into lower salinity habitats (decreased Sr/Ca outside of the otolith core), approximately one third of the sampled individuals had otolith core chemistry that indicated spawning or hatching in or near freshwater habitats (low Sr/Ca throughout the otolith). Morais (Estuar Coast 34:630–639, 2012) proposes a different interpretation: he suggests that the high Sr/Ca found in 68 % of juvenile otolith cores (and low Sr/Ca just outside of the core region) may be due to females hydrating their eggs in offshore (high-salinity) waters, with spawning, hatching, and egg/larval development all actually occurring in low-salinity environments (his “sea-run mother” hypothesis). While there is ample literature supporting the importance of maternal contributions to otolith microchemistry during vitellogenesis, it is our contention that such contributions ultimately depend on the ecology and reproductive physiology of each species. Further, a mass inshore migration of adult southern flounder during their spawning season is counter to the well-documented life history patterns for this species throughout its range. While we appreciate Morais' perspective, we continue to stand by the conclusion of our original paper.     

What have natural and human changes wrought on the foraminifera of San Francisco Bay late Quaternary estuaries?

In this study we compare the foraminifera of modern South San Francisco Bay with fossils from sediments of a previous estuary at 125 ka to provide a basis for interpreting the impact of natural and human change on the benthic ecosystem. All the species found in the Pleistocene sediments of this study are estuarine and/or shallow-water species occurring commonly in San Francisco Bay today, except for the introduced foraminifer Trochammina hadai, a native of Japan that was not found in samples taken in San Francisco Bay before 1983. The biodiversity and species composition of the fossil and modern assemblages before the introduction of T. hadai are nearly identical, suggesting that the environmental and physical changes in the 125,000-year-old and modern estuaries have not had a significant effect on the meiofauna of the Bay. In contrast, modern anthropogenic change in the form of species introductions has impacted the modern foraminiferal assemblage: T. hadai began to dominate the modern assemblage a decade after its introduction. Similar to the recorded impacts of introductions of marine metazoan invertebrate species, the dominance of T. hadai changed species proportions in the post-1980s foraminiferal assemblage, however no known extinctions in the native foraminiferal fauna occurred.     

Upstream—Downstream Shifts in Peak Recruitment of the Native Olympia Oyster in San Francisco Bay During Wet and Dry Years

Understanding the conditions that drive variation in recruitment of key estuarine species can be important for effective conservation and management of their populations. The Olympia oyster (Ostrea lurida) is native to the Pacific coast of North America and has been a target of conservation efforts, though relatively little information on larval recruitment exists across much of its range. This study examined the recruitment of Olympia oysters at biweekly to monthly intervals at four sites in northern San Francisco Bay from 2010 to 2015 (except 2013). Mean monthly temperatures warmed at all sites during the study, while winter (January–April) mean monthly salinity decreased significantly during a wet year (2011), but otherwise remained high as a result of a drought. A recurring peak in oyster recruitment was identified in mid-estuary, in conditions corresponding to a salinity range of 25–30 and >16 °C at the time of settlement (April–November). Higher average salinities and temperatures were positively correlated with greater peak recruitment. Interannual variation in the timing of favorable conditions for recruitment at each site appears to explain geographic and temporal variation in recruitment onset. Higher winter/spring salinities and warmer temperatures at the time of recruitment corresponded with earlier recruitment onset within individual sites. Across all sites, higher winter/spring salinities were also correlated with earlier onset and earlier peak recruitment. Lower winter salinities during 2011 also resulted in a downstream shift in the location of peak recruitment.     

Detrital zircon record of the Paleoproterozoic to Mesoproterozoic cratonic basins in the São Francisco Craton

Paleoproterozoic to Mesoproterozoic cratonic basins in the São Francisco Craton are classified into three megasequences: Statherian, Calymmian–early Ectasian, and Stenian–early Tonian sequences. The location, depositional age, and provenance of these sequences are reflected in their detrital zircon U–Pb age distributions. A minimum of five detrital zircon age distributions are distinguishable: i) the Archean and Rhyacian distribution, which is restricted to the Calymmian interval at Chapada Diamantina; ii) the Rhyacian distribution, which occurs in the Statherian, Calymmian, and Stenian intervals and generally precedes the Proterozoic distribution; iii) the Proterozoic distribution, which always succeeds the Rhyacian distribution and appears in the Brasília Belt and Southern Espinhaço; iv) the mixed Archean and Proterozoic distribution, restricted to the Stenian interval at the Southern Brasília Belt; and v) the Statherian distribution, which is present in the Statherian interval at Espinhaço Basin and is recycled into the Calymmian and Stenian intervals at Chapada Diamantina. Based on the Hf isotope compositions of the detrital zircons, most of the sequences are predominantly sourced from Archean juvenile terrains and from Archean and Paleoproterozoic evolved terrains. The exception is the Paranoá Group, western São Francisco Craton, whose positive ɛHf(t) values suggest juvenile Paleoproterozoic sources such as the Goiás Massif. The Archean zircons from Chapada Diamantina have Hf depleted mantle model ages ranging from Paleoarchean to Neoarchean and are mainly derived from the Gavião Block within northeastern São Francisco Craton. The model unify a dataset spanning hundreds of millions of years of the depositional record over a large area of central and eastern Brazil. The records will assist researchers in unraveling the sedimentary and tectonic history of the Archean and Paleoproterozoic continents from new data collected regionally and in other continents.     

Response of Ruppia maritima to the reclaimed wastewater in coastal artificial landscape river

In recent years, reclaimed wastewater as a water source for urban artificial landscape rivers is being rapidly developed in some coastal cities with limited water resource available in China. However, eutrophication occurs more often in the landscape waterbody with reclaimed wastewater than in natural rivers and lakes. The study of restoration and reconstruction of macrophytes, especially the submerged aquatic vegetation, is essential to inhibit eutrophication of reclaimed wastewater. This study investigated the seasonal variation of biomass of Ruppia maritima in the artificial landscape river using reclaimed wastewater as the only water source in Tianjin, China. It was found that there were two seasonal growth peaks of Ruppia maritima each year in the coastal reclaimedwastewater. The contents of nitrogen and phosphorus of Ruppia maritima varied with the season.     

Sedimentary Evolution of the Qinghai–Tibet Plateau in Cenozoic and its Response to the Uplift of the Plateau

We have studied the evolution of the tectonic lithofacies paleogeography of Paleocene–Eocene, Oligocene, Miocene, and Pliocene of the Qinghai–Tibet Plateau by compiling data regarding the type, tectonic setting, and lithostratigraphic sequence of 98 remnant basins in the plateau area. Our results can be summarized as follows. (1) The Paleocene to Eocene is characterized by uplift and erosion in the Songpan–Garzê and Gangdisê belts, depression (lakes and pluvial plains) in eastern Tarim, Qaidam, Qiangtang, and Hoh Xil, and the Neo-Tethys Sea in the western and southern Qinghai–Tibet Plateau. (2) The Oligocene is characterized by uplift in the Gangdisê–Himalaya and Karakorum regions (marked by the absence of sedimentation), fluvial transport (originating eastward and flowing westward) in the Brahmaputra region (marked by the deposition of Dazhuka conglomerate), uplift and erosion in western Kunlun and Songpan–Garzê, and depression (lakes) in the Tarim, Qaidam, Qiangtang, and Hoh Xil. The Oligocene is further characterized by depressional littoral and neritic basins in southwestern Tarim, with marine facies deposition ceasing at the end of the Oligocene. (3) For the Miocene, a widespread regional unconformity (ca. 23 Ma) in and adjacent to the plateau indicates comprehensive uplift of the plateau. This period is characterized by depressions (lakes) in the Tarim, Qaidam, Xining–Nanzhou, Qiangtang, and Hoh Xil. Lacustrine facies deposition expanded to peak in and adjacent to the plateau ca. 18–13 Ma, and north–south fault basins formed in southern Tibet ca. 13–10 Ma. All of these features indicate that the plateau uplifted to its peak and began to collapse. (4) Uplift and erosion occurred during the Pliocene in most parts of the plateau, except in the Hoh Xil–Qiangtang, Tarim, and Qaidam.     

Dark Carbon Fixation in the Columbia River’s Estuarine Turbidity Maxima: Molecular Characterization of Red-Type cbbL Genes and Measurement of DIC Uptake Rates in Response to Added Electron Donors

Dark CO₂ fixation has been shown to rival the importance of oxygenic photosynthesis in the global carbon cycle, especially in stratified environments, such as salt wedge estuaries. We investigated this process in the Columbia River estuary using a variety of techniques including functional gene cloning of cbbL (the large subunit of form I RuBisCO), quantitative real-time PCR (qPCR) estimations of cbbL abundance, and analyses of stimulated ¹⁴C-bicarbonate assimilation. A diversity of red-type cbbL genes were retrieved from clone libraries, with 28 unique operational taxonomic units determined from 60 sequences. The majority of the sequences formed two clusters that were distinct from the major clusters typically found in soil environments, revealing the presence of a unique community of autotrophic or facultatively autotrophic/mixotrophic microorganisms in the Columbia River estuary. qPCR estimates indicated that roughly 0.03–0.15 % of the microbial population harbored the cbbL gene, with greater numbers of total bacteria and cbbL gene copies found in the estuarine turbidity maxima (ETM) compared to non-ETM events. In vitro incubations with radiolabeled bicarbonate indicated maximum stimulation by thiosulfate and also suggested that a diversity of other potential electron donors may stimulate CO₂ fixation, including nitrite, ammonium, and Mn(II). Taken together, these results highlight the diversity of the microbial metabolic strategies employed and emphasize the importance of dark CO₂ fixation in the dynamic waters of the Columbia River estuary despite the abundance of organic material.     

Modeling on adsorption–desorption of trace metals to suspended particle matter in the Changjiang Estuary

The uptake and release of trace metals (Cu, Ni, Zn, Cd, and Co) in estuaries are studied using river and sea end-member waters and suspended particulate matter (SPM) collected from the Changjiang Estuary, China. The kinetics of adsorption and desorption were studied in terms of environmental factors (pH, SPM loading, and salinity) and metal concentrations. The uptake of the metals studied onto SPM occurred mostly within 10 h and reached an asymptotic value within 40 h in the Changjiang Estuary. As low pH river water flows into the high pH seawater and the water become more alkaline as it approaches to the seaside of estuary, metals adsorb more on SPM in higher pH water, thus, particulate phase transport of metal become increasingly important in the seaward side of the estuary. The percentage of adsorption recovery and the distribution coefficients for trace metals remained to be relatively invariable and a significant reduction only occurred in very high concentrations of metals (>0.1 mg L⁻¹). The general effect of salinity on metal behavior was to decrease the degree of adsorption of Cu, Zn, Cd, Co, and Ni onto SPM but to increase their adsorption equilibrium pH. The adsorption–desorption kinetics of trace metals were further investigated using Kurbatov adsorption model. The model appears to be most useful for the metals showing the conservative behavior during mixing of river and seawater in the estuary. Our work demonstrates that dissolved concentration of trace metals in estuary can be modeled based on the metal concentration in SPM, pH and salinity using a Kurbatov adsorption model assuming the natural SPM as a simple surfaced molecule.     

Is geographical proximity necessary in the innovation networks in the era of global economy?

In the analysis of geographical spillovers, a commonly accepted hypothesis is that the different actors of innovation need to be physically closed to one another because the transfer of tacit knowledge implies frequent face-to-face relations. This hypothesis is put under closer examination in this paper. The first section analyses the need for economic agents to be closely located to develop research and innovative activities, starting with the analysis of their need for co-ordination and using some case studies. Based on the example of three French regions, the second section examines the importance given by the local development policies to geographical proximity in order to support the rapid development of local networks favouring innovation. In both sections, nonlocal relations appear as a key factor to develop innovation. As a conclusion, nonlocal relations should be encouraged by local development policies in the same way as local relations.     

Is the current stress state in the Central Amazonia caused by surface water loading?

We present new fault data for the region of the Manaus, Central Amazonia, Brazil. Field measurements concentrate on the Miocene–Holocene sedimentary deposits exposed on the Amazonas River Basin, in order to investigate the development of this region in this time-interval. Two faulting events are distinguished since the Miocene. The oldest one is related to NW–SE extension during Miocene times and associated with paleoseismicity, while the younger is associated with NE–SW extension direction and seems to persist today. These two deformational events may be thereby considered Neotectonic. Moreover, the second extensional pulse with NE–SW orientation can be explained by the surface hydrological loading, which induces the Central Amazonia flexural subsidence and may promote extensional stresses in the upper crust.     

Impacts of Drought, Flow Regime, and Fishing on the Fish Assemblage in Southern Australia’s Largest Temperate Estuary

We analysed a 25-year time series of fishery catch and effort data, and age/size information for four large-bodied, native fish species to investigate the hypotheses that under conditions of reduced freshwater inflows and high fishing pressure: (1) the structure of fish assemblages in the lower Murray River system have changed, (2) species diversity of fishes has declined and (3) population age structures of large-bodied, late-maturing, native fish (Macquaria ambigua, Argyrosomus japonicus, Rhombosolea tapirina and Acanthopagrus butcheri) have been reduced. Annual catches and effort in the lower Murray River system were stable for 25 years, but proportional contribution to the total catch from each of freshwater, estuarine and adjacent marine habitats, and the species within them varied. Fish assemblages generally differed between subsequent 5-year periods, with the exception of 1989–1993 when floods occurred in 4 out of 5 years, and the following 5-year period (1994–1998). Species richness declined steeply over 25 years in freshwater and estuarine habitat and species diversity (Hill’s H ₂) also declined after 2001 in estuarine habitat. Species with rapid growth and early maturation (opportunistic strategists), increasingly dominated catches, whilst species with slow growth and late maturation (periodic strategists) declined. Truncated population age structures suggested longevity overfishing of three periodic strategist species: golden perch (M. ambigua), black bream (A. butcheri), mulloway (A. japonicus) and a fourth species with an intermediate strategy, greenback flounder (R. tapirina). This has implications for management because loss of older/larger individuals suggests reduced capacity to withstand or recover from deteriorated environmental conditions associated with a historically extreme drought in the lower Murray River system. Management of these species should seek to preserve the remnant population age structures and then to rebuild age structures by allowing recruits to become established in the adult population. We recommend that assessment of multi-species fisheries in changeable environments, such as occur in estuaries and other end-river environments, requires a suite of indicators that address changes in fish assemblages and populations.     

Fecal Sterols in Estuarine Sediments as Markers of Sewage Contamination in the Cubat?o Area, S?o Paulo, Brazil

Sterol biomarkers serve as an alternative method for detecting sewage pollution. Sterols were extracted from samples of surface sediment collected in Cubat?o (the Vila dos Pescadores and Vila Esperan?a communities) and quantified using GC–MS after Soxhlet extraction, cleanup, and derivatization. Fecal contamination was evaluated based on the concentration of coprostanol and the ratio of the selected sterols. The most abundant sterol was cholestanol, followed by coprostanol. The concentrations of coprostanol in surface sediments ranged from a minimum of 4.21?μg?g^?1 dry sediment (Vila dos Pescadores station) to a maximum of 8.32?μg?g^?1 dry sediment (Vila Esperan?a station). A coprostanol concentration of about 10?μg?g^?1 was found, indicating areas of high sewage contamination. Coprostanol levels at sewage stations were higher than in other Brazilian coastal areas, which may be attributed to the fraction of the population without sanitation services.     

Is the tilt of the Thames valley towards the east caused by a distal lobe of the Icelandic mantle plume?

Over the last 30 years, a growing body of research has shown that first-order control of the elevation of Earth's surface is exercised by thermal anomalies in the upper asthenosphere. One line of research is to test models and observations of mantle behaviour against the sedimentary record. A second line of research is to use the sedimentary record to further understanding of mantle behaviour. Here this second line of research is adopted: a particular hypothesis of mantle behaviour is tested against the Quaternary sedimentary record of the Thames valley, England. Schoonman et al. (2017) have proposed that a warm finger of mantle material extending from the Icelandic plume underlies southern England at the present day. That warm finger would represent the distal end of the influence of the Icelandic plume in this area, and would have advanced broadly from west to east, causing a progressive tilt of the surface of the Thames valley towards the east. The warm-finger hypothesis is supported by the evidence reviewed here. That evidence consists of two main sets of observations, both sets established beyond reasonable doubt by many researchers over many years. First, there is the progressive increase in elevation westward from the present-day coast of the North Sea of the 2.5–2 Ma shallow-marine Red and Norwich Crags. Second, there is the subsequent Quaternary record of progressive eastward tilting of the Thames valley shown in the river terraces.     

Is groundwater in the Tarkwa gold mining district of Ghana potable?

Hand-pump wells in the Tarkwa gold mining district and the geologically similar Bui area were chemically analysed and compared in an effort to determine whether groundwaters in the Tarkwa area have been affected by mining. Significant chemical differences attributed to mine water discharges have been observed in streams in the Tarkwa area. Groundwater chemistry from hand-pump wells in Tarkwa and Bui areas reveal similar hydrochemical facies, predominantly Ca–Na–Mg–HCO₃–Cl. However, except for SO₄^2–, ionic concentrations of groundwaters from Bui are greater than those from Tarkwa probably due to differences in (1) water availability during sedimentation (2) water-rock interactions and/or residence times for water. No demonstrable impact of mining on groundwaters from hand-pumped wells in the Tarkwa area has been noted. Hydrogeological inference suggests that the main streams which receive mine water discharges are both gaining and are groundwater divides. The overwhelming majority of population centres and mining operations are located on opposite sides of these groundwater divides, therefore, it is unlikely aquifers tapped for drinking by these communities would be affected by mining.