Release of sulfur- and oxygen-bound components from a sulfur-rich kerogen during simulated maturation by hydrous pyrolysis

An immature sulfur-rich marl from the Gessosso-solfifera Formation of the Vena del Gesso Basin (Messinian, Italy) has been subjected to hydrous pyrolysis (160 to 330°C) to simulate maturation under natural conditions. The kerogen of the unheated and heated samples was isolated and the hydrocarbons released by selective chemical degradation (Li/EtNH₂ and HI/LiAlH₄) were analysed to allow a study of the fate of sulfur- and oxygen-bound species with increasing temperature. The residues from the chemical treatments were also subjected to pyrolysis–GC to follow structural changes in the kerogens. In general, with increasing hydrous pyrolysis temperature, the amounts of sulfide- and ether-bound components in the kerogen decreased significantly. At the temperature at which the generation of expelled oil began (260°C), almost all of the bound components initially present in the unheated sample were released from the kerogen. Comparison with an earlier study of the extractable organic matter using a similar approach and the same samples provides molecular evidence that, with increasing maturation, solvent-soluble macromolecular material was initially released from the kerogen, notably as a result of thermal cleavage of weak carbon–heteroatom bonds (sulfide, ester, ether) even at temperatures as low as 220°C. This solvent-soluble macromolecular material then underwent thermal cleavage to generate hydrocarbons at higher temperatures. This early generation of bitumen may explain the presence of unusually high amounts of extractable organic matter of macromolecular nature in very immature S-rich sediments.     

Origin of organic sulphur compounds and sulphur-containing high molecular weight substances in sediments and immature crude oils

The distribution patterns of Organic Sulphur Compounds (OSC), occurring in certain sediments and immature crude oils, were compared with those of the corresponding hydrocarbons. Because of the complexity of the OSC mixtures, they were desulphurized to hydrocarbons (n-alkanes, isoprenoid alkanes, steranes, triterpanes and branched alkanes). The hydrocarbons produced by desulphurization of the OSC exhibited distribution patterns different from those of the hydrocarbons originally present. Therefore reaction of elemental sulphur with these hydrocarbons at elevated temperatures must be considered as an unlikely origin for these OSC. Sulphur incorporation reactions on an intramolecular basis with suitable functionalized precursors at the early stages of diagenesis are probably the major origin for these OSc. Desulphurization of high molecular weight fractions also produced hydrocarbons, dominated by n-alkanes up to C₄₀. Therefore it is assumed that these substances contain n-alkanes, 2,5-dialkyl-thiophenes and -thiolanes linked to each other by sulphur briddges. These findings stronly suggest that sulphur-containing high molecular weight substances are formed by the same sulphur incorporation reactions as OSC, but in an intermolecular fashion.     

Organic pollutants associated with macromolecular soil organic matter: Mode of binding

A study of ether-linked moieties in macromolecular bound residues of polycyclic aromatic hydrocarbons (PAH) generated in bioremediation experiments was performed using high temperature hydrolysis degradation with subsequent analysis of the products by GC-MS. This hydrolysis reaction was specifically designed to cleave ether bonds including relatively stable diarylether structures. Among the reaction products, aromatic alcohols representing typical microbiologically derived metabolites of PAH were found in addition to natural compounds. Thus, parts of the bound residues appeared to be linked within the macromolecular material by ether bonds. Model experiments with an oxidoreductase enzyme and aromatic alcohols indicate the formation of these ether bonds to be an enzyme-catalysed process.     

Stepwise chemical degradation of immature S-rich kerogens from Vena del Gesso (Italy)

Stepwise chemical degradation involving cleavage of ester bonds (KOH/MeOH), sulfide and remaining ester bonds (Li/EtNH₂), ether bonds (HI/LiAlH₄) and sub-units linked to aromatic moieties (RuO₄) has been carried out on the kerogens of two immature sulfur-rich marls (IV-1.4 and 1.8, TOC ca. 1.5%) from evaporitic cycle IV of the Gesosso-solfifera Formation (Messinian, Vena del Gesso, Italy). Up to 80% of the organic matter was converted to solvent-soluble material, with the greatest proportion released by Li/EtNH₂. The majority by far of the extracts comprises polar macromolecular material which is thought to correspond to high molecular weight sub-units of the kerogen. Quantification of the small amounts (<1%) of the released GC-amenable components indicates that diagenetic sulfurization was more important in the case of kerogen IV-1.4 but that the extent of oxygen sequestration was similar in both cases; the distributions of biomarkers released by ether cleavage of the desulfurized residue and polar fraction showed differences which reveal heterogeneity in the building blocks making up different macromolecular fractions.     

大分子烃类拉曼光谱特征及在烃包裹体研究中的意义

拉曼光谱分析发现,无论大分子烃类含碳数如何不同,分子结构如何复杂,大分子烃类的拉曼谱图有很多相同性,即烃类的拉曼谱图只受烷烃骨架、环烷基和苯环等的影响,并由此形成了四类大分子烃类的拉曼谱图：烷烃类、复杂烷烃类（以环烷基为主）、结构平坦相连的芳香烃类和结构复杂的芳香烃类。烃是石油的主要组分,因此,被包裹在矿物中的石油——烃包裹体的拉曼谱图也只有四种：发强荧光烃包裹体、含沥青烃包裹体、含低碳数芳烃包裹体和烷烃包裹体。激光拉曼对烃包裹体组分有个总体特征的体现,用激光拉曼分析烃包裹体组分中具体烃的种类是不科学的。但通过烃包裹体的拉曼谱图特征,可以研究烃包裹体组分特征、古油藏成熟度及油气演化程度等信息。     

Structural investigations of sulphur-rich macromolecular oil fractions and a kerogen by sequential chemical degradation

Structural studies of a sulphur-rich kerogen and macromolecular oil fractions from the Monterey Formation were performed by selective sequential chemical degradation. The method provides low-molecular weight compounds as former building blocks of the network which allow detailed analyses on a molecular level. The degradation sequence is based on three subsequently performed reactions—a selective cleavage of sulphur bonds in the first step carried out with Ni(0)cene/LiAlD₄, an ether and ester bond cleavage (BCl₃), and an oxidation of aromatic entities by ruthenium tetroxide as a final step. Each step of this sequence afforded a considerable amount of low-molecular weight material which was separated chromatographically and studied by GC and GC/MS, while the high-molecular weight or insoluble fractions were subjected to the next reaction step.The chemical degradation products—hydrocarbons and carboxylic acids—are discussed in terms of incorporation into the macromolecular structure, distribution of heteroatomic bridges and the genetic relationships between the different macromolecular crude oil fractions and kerogen.Labelling experiments with deuterium provided evidence for a simultaneous linkage by oxygen and sulphur functionalities or by aromatic units and sulphur bonds of cross-linking macromolecular network constituents.The determination of sulphur positions in the macromolecule suggests early diagenetic sulphur incorporation into the biological precursor compounds and subsequent formation of a cross-linked network.     

Structural insights from boron tribromide ether cleavage into lignites and low maturity coals from the New Zealand Coal Band

Ether functionalities form an important cross-linking structure within the macromolecular organic matrix of lignites and coals. To obtain a deeper insight into the complex internal structure of such macromolecules and the maturation related changes of the ether compounds within the network structure, boron tribromide (BBr₃) ether cleavage was applied to a series of lignite and coal samples of different maturity (R₀ 0.27-0.80%) obtained from coal mines and natural outcrops from the North and South Island of New Zealand. Terminal ether-bound alcohols rapidly decrease during diagenesis and occur only in low amounts during the catagenetic stage. Comparison between ester- and ether-bound terminal alcohols indicates a parallel decreasing trend during the diagenetic stage, suggesting that the stability differences between both linkages are not large enough to be observed in maturation processes over geological time scales. Polyether compounds were detected with chain length up to five carbon atoms. After a small decrease during the diagenetic phase these compounds occur in relatively high concentrations, even in the main catagenetic stage. This suggests that these linkage structures represent important cross-linking substructures within the macromolecular matrix of lignites and coals being sterically protected within the macromolecular network during the maturation process. Additional cross-linking substructures were (poly)ether aromatics, esters and ketones.     

Organic geochemical studies of a recent Inner Great Barrier Reef sediment—I. Assessment of input sources

The concentration of solvent-extractable (SE) and bound hydrocarbons, ketones, alcohols, sterols, monocarboxylic acids, hydroxyacids and α,ω-dicarboxylic acids of a surface sample (0–2.5 cm) from a recent carbonate tropical sediment taken at 60ft (18m) depth north-west of the Low Isles, North Queensland, are reported in detail. n-Alkanes are a minor constituent in the SE and bound hydrocarbon fractions with the major component being unresolved complex hydrocarbon material which is not an anthropogenic input. 6,10,14-Trimethylpentadecan-2-one derived from chlorophyll, as well as phytol, were identified as major components of the ketone and alcohol constituents. No chlorophyll pigments or pigmented degradation products were present, implying degradation before incorporation into the sediment. This conclusion is consistent with evidence for higher-plant input in which all sensitive lipids have been degraded before incorporation. SE and bound fractions have been studied in detail and show considerable differences probably arising from the importance of viable biomass in the SE fraction. Inputs to the sediment are determined as higher plants, algae, bacteria, fungi and meiofauna in descending order of importance.     

Maturation related changes in the distribution of ester bound fatty acids and alcohols in a coal series from the New Zealand Coal Band covering diagenetic to catagenetic coalification levels

A rank series of lignites and coals of low to moderate maturation levels (vitrinite reflectance (R₀): 0.27–0.8%) from the New Zealand Coal Band were investigated using alkaline ester cleavage experiments to reveal compositional changes of ester bound components (fatty acids and alcohols) during increasing maturation. Ester bound alcohols are found to be present in highest amounts in the very immature lignite samples (R₀: 0.27–0.29%), but show a rapid decrease during early diagenesis. Ester bound fatty acids also show an initial exponential decrease during diagenesis, but reveal an intermittent increase during early catagenesis before decreasing again during main catagenesis. This intermittent increase was related to the short chain fatty acids. To obtain a maturity related signal and to eliminate facies related scattering in the amounts of fatty acids in the coal samples, the carbon preference index of fatty acids (CPI_FA) parameter is introduced here. For the long chain fatty acids (C₂₀–C₃₂) originating from terrigenous plant debris, the CPI_FA decreases with increasing maturity, showing a strong maturation related signal. During diagenesis, the same trend can be observed for the short chain fatty acids, but the intermittent increase in the amounts of short chain fatty acids is also accompanied by high CPI_FA values. This indicates less altered organic biomass at this advanced maturation level and is in contrast to the mature CPI_FA signal of the long chain fatty acids of the same samples. One possible reason for this discrepancy could be extremely different amounts of short and long chain fatty acids in the original source organic matter of these samples. However, another intriguing explanation could be the incorporation of immature bacterial biomass from deep microbial communities containing C₁₆ and C₁₈ fatty acids as main cell membrane components. Deep microbial life might be stimulated at this interval by the increasing release of thermally generated potential substrates from the organic matrix during early catagenesis. In contrast to the fatty acids, the high amounts of alcohols in the immature lignite samples are also visible in the alkene distribution from the open system pyrolysis experiments of the organic matrix before and after saponification.     

Evidence for gammacerane as an indicator of water column stratification

A new route for the formation of gammacerane from tetrahymanol is proposed; in addition to dehydration and hydrogenation, sulphurisation and early C-S cleavage are shown to be important in the pathway of formation, especially in marine sediments. Evidence is twofold. First, relatively large amounts of the gammacerane skeleton are sequestered in S-rich macromolecular aggregates formed by natural sulphurisation of functionalised lipids. Selective cleavage of polysulphide linkages with MeLi/MeI led to formation of 3-methylthiogammacerane, indicating that the gammacerane skeleton is primarily bound via sulphur at position 3, consistent with the idea that tetrahymanol (or the corresponding ketone) is the precursor for gammacerane. Second, upon mild artificial maturation of two sediments using hydrous pyrolysis, gammacerane is released from S-rich macromolecular aggregates by cleavage of the relatively weak C-S bonds. The stable carbon isotopic compositions of gammacerane and lipids derived from primary producers and green sulphur bacteria in both the Miocene Gessoso-solfifera and Upper Jurassic Allgau Formations indicate that gammacerane is derived from bacterivorous ciliates which were partially feeding on green sulphur bacteria. This demonstrates that anaerobic ciliates living at or below the chemocline are important sources for gammacerane, consistent with the fact that ciliates only biosynthesize tetrahymanol if their diet is deprived of sterols. This leads to the conclusion that gammacerane is an indicator for water column stratification, which solves two current enigmas in gammacerane geochemistry. Firstly, it explains why gammacerane is often found in sediments deposited under hypersaline conditions but is not necessarily restricted to this type of deposits. Secondly, it explains why lacustrine deposits may contain abundant gammacerane since most lakes in the temperate climatic zones are stratified during summer.     

Extractable and bound lipid components in a freshwater sediment

Lipids directly extracted by organic solvents from sediment of a small eutrophic lake (Crose Mere) comprise free hydrocarbons, alcohols, sterols and monocarboxylic acids together with an esterified component yielding additional amounts of alcohols, sterols and monocarboxylic acids on saponification. The carbon-number distributions of the free lipid compound classes indicate a major contribution from allochthonous sources whereas the distributions within compound classes released on saponification are attributable to autochthonous sources. The more advanced state of decomposition of terrestrial biota relative to aquatic biota and the composition of the source organisms are postulated to be factors leading to the differences in distribution of corresponding free and esterified lipid classes. Acid hydrolysis of solvent-extracted sediment liberates additional lipid constituents belonging to the above compound classes. Of these bound lipids, the n-alkanes and branched/cyclic alkanoic acids show a more significant bacterial contribution than do the corresponding components obtained by solvent extraction alone.     

The influence of biodegradation on resins and asphaltenes in the Liaohe Basin

Asphaltenes are traditionally considered to be recalcitrant to microbial alteration. Resins and asphaltenes of seven biodegraded oils extracted from reservoir cores of two columns (Es3 and Es1) of the Lengdong oilfield in the Liaohe Basin, NE China, were studied to test this hypothesis. Elemental (C, H, N, O, S) and isotopic compositions (δ¹³C and δ¹⁵N) were measured, FT-IR was used to study the oxygenated functionalities of both resins and asphaltenes, and Py–GC–MS was used to elucidate how alkyl side chains of asphaltenes were altered during biodegradation. We conclude that the products of biodegradation, such as carboxylic acids, phenol and alcohols, may not only contribute to the resin fraction of crude oils, but also are linked with functionalities of resins and asphaltenes. The amount of asphaltenes increases because some resin molecules are enlarged and their polarity increased such that they can be precipitated by hexane as newly generated asphaltenes. Thus, the hydrocarbons that are progressively consumed during biodegradation can pull the δ¹³C of asphaltene fraction closer to the δ¹³C of the altered resins and hydrocarbons that were consumed.     

Melanoidins—kerogen precursors and geochemical lipid sinks: a study using pyrolysis gas chromatography (PGC)

Melanoidins, acidic polymeric products of amino acid/sugar condensation reactions, are shown to be capable of reacting with and binding functionalized lipid molecules. Pyrolysis gas chromatography is used to monitor the inclusion of lipids (alcohols and acids) into, and to monitor the changes in composition caused by artificial diagenesis of, the melanoidins. Artificial diagenesis of the lipidcontaining melanoidins produces a material resembling kerogen. The possible role of melanoidins in the formation of kerogens is discussed as are internal transformations within kerogens during diagenesis.     

High temperature supercritical carbon dioxide extractions of geological samples: effects and contributions from the sample matrix

Stepwise high temperature supercritical fluid extraction (HT–SFE) has been suggested as a tool to study the speciation of hydrocarbons in geological samples. Hydrocarbons extracted at the lower temperatures (e.g., 50°C) are presumed to be part of the freely extractable fraction, while those recovered at the high temperatures (e.g., 300 and 350°C) are those `trapped' within the macromolecular organic matrix and are therefore, resistant to desorption. The latter are released from the matrix after this undergoes thermally induced structural rearrangements. However, the question still remains if and to what extend, pyrolysis of the organic matrix can contribute to this fraction. This study shows, based on the characteristics of the sample matrix of two different shale samples subject to HT–SFE, that pyrolytic contributions at elevated extraction temperatures are only minor under the experimental conditions used, and that thermally induced structural changes in the macromolecular organic matrix are only partially irreversible.     

Molecular characterization of organic matter in sediments from the Keg River formation (Elk Point group), western Canada sedimentary basin

Distributions of free and sulfur-bound biomarkers in organic-rich sediments from the lower and upper Keg River formation (Elk Point group, western Canada) reveal deposition of these sediments under reducing conditions, in agreement with the geological data. The predominance of aryl isoprenoids of Chlorobiaceae origin indicates that photic zone anoxia occurred during time of deposition. A series of novel aryl isoprenoids with a carboxylic acid function was identified by GC–MS and the structure of the predominant 3-methyl-5-(2′,3′,6′-trimethylphenyl)pentanoate was proven by synthesis of an authentic standard. The occurrence of these acids gives evidence that oxidative breakdown at least partially accounts for the diagenetic fate of aromatic carotenoids. Li/EtNH₂ desulfurization of two kerogen concentrates yielded only low amounts of sulfur-bound hydrocarbons, and suggests that either sulfur sequestration was not a predominant process or, more probably, that a major part of the hydrocarbons, initially sulfurized, were released upon maturation, giving further evidence that (poly)sulfide bonds are cleaved at relatively low levels of thermal stress.     

Primary alteration—oxidation of marine algal organic matter from oil source rocks of the North Sea and Norwegian Arctic: new findings

The presence of partially oxidized algal organic matter in oil-prone marine source rocks, is the rule rather than the exception. Partially oxidized, algal kerogen can still act as a significant source of liquid hydrocarbons. However, the corresponding peak of C₁₂ + hydrocarbon generation is shifted to a considerably lower maturity level compared with that of the classical Type II kerogen. The extent of primary alteration-oxidation of marine algal kerogen is monitored by means of solid state microfluorescence spectroscopy. A new parameter, the Primary Alteration Factor (PAF) is established, and the relationships between PAF and H/C, O/C, HI, TOC and between PAF and %₀δ¹³C are determined. The present data show large variations in the bulk chemistry of immature marine algal kerogens, and reveal evidence for gradational dehydrogenation/oxidation of the source organic matter. This contrasts with the recently proposed mechanism for kerogen formation. SEM analysis reveals a relationship between the physical breakdown of algal organic matter and the formation of liptodetrinite. FTIR analysis shows that the incorporation of primary oxygen in the kerogen macromolecules is not in the form of carbonyl or carboxyl functionalities. The presence of highly unreactive, stable oxygen, associated with aromatic structures in partially oxidized algal kerogen, is suggested by resistance of the kerogen to graphitization. The FTIR data also suggest the presence of aryl ether oxygen. The present findings raise fundamental questions regarding the mechanisms of kerogen cracking and kerogen formation, and have important implications for petroleum exploration.     

The lipid chemistry of an interfacial sediment from the Peru Continental Shelf: Fatty acids,alcohols, aliphatic ketones and hydrocarbons

A sample of the sediment-water column interface which lies on the continental shelf under the Peru upwelling regime, has been examined for fatty acids, fatty alcohols, ketones and hydrocarbons. Fatty acids were the most abundant compound class, ranging from C₁₂-C₂₄, with 16:0 as the major component (765.5 μg/g dry sediment). The alcohols were dominated by 3,7,11,15-tetramethylhexadeca-2-en-ol (phytol), with even-chain n-alcohols in the range C₁₄-C₂₀. The ketones consisted of C₃₇-C₃₉ di- and tri-unsaturated alken-2-ones and alken-3-ones. Both alkanes and alkenes were present in the hydrocarbon fraction; the alkanes ranging from C₁₃ — C₂₀ and comprising both straight chain and isoprenoid compounds; the alkenes consisting of isomeric pairs of C₂₅ branched trienes and tetraenes. The data indicate that the organic content has been contributed very largely from marine sources (probably mainly from phytoplankton and bacteria), showing little terrigenous influence. The presence of labile compounds such as polyunsaturated fatty acids (with two to six double bonds), implies that the sediment has undergone very little diagenetic alteration, and the lipids are probably largely unchanged from the state in which they actually reached the sediment. They may therefore serve as a useful baseline in assessing diagenesis in older sediments, where diagenetic transformations are more advanced.     

A molecular and carbon isotopic study towards the origin and diagenetic fate of diaromatic carotenoids

Pyrolysates of high-molecular-weight sedimentary fractions of the Duvernay Formation (Western Canada Basin) are dominated by 1,2,3,4- and 1,2,3,5-tetramethylbenzene, which, generated via beta-cleavage, indicate the presence of diaromatic carotenoids in the macromolecular aggregates. This was substantiated by desulphurization of sulphur-rich aggregates of the polar fraction, which released (partly) hydrogenated carotenoids. Furthermore, these components were important constituents of the aromatic hydrocarbon fractions and related oils. Apart from renieratane and isorenieratane, 1H NMR analysis established the aromatic substitution pattern of the most abundant component present, which was identified as a diaromatic compound with an unprecedented 2,3,6-/3,4,5-trimethyl aromatic substitution pattern. Molecular and isotopic analyses of both soluble and insoluble fractions of organic matter revealed relationships between diagenetically-derived carotenoids found in bitumen and related oils and their precursors incorporated into high-molecular-weight fractions. Aryl isoprenoids, important components in extracts and oils, were apparently derived from thermal cracking of bound diaromatic carotenoids rather than cleavage of free carotenoids as previously suggested. Furthermore, products derived from diaromatic carotenoids were substantially enriched in 13C relative to n-alkanes of algal origin. Together with the characteristic carotenoids, this isotopic enrichment provides evidence of significant contributions from photosynthetic green sulphur bacteria (Chlorobiaceae), which fix carbon via the reversed tricarboxylic acid (TCA) cycle. In spite of the prominence of these molecular signals, the overall isotopic composition of the organic matter indicated that only a very small portion of the preserved organic carbon was derived from the biomass of photosynthetic green sulphur bacteria.     

Polar constituents of organic matter rich marls from evaporitic series of the Mulhouse basin

A suite of marl samples from the evaporitic series of the Mulhouse basin (France; Lower Oligocene) was studied for its biomarker content, in particular its polar constituents. Novel series of 3-carboxyalkyl steranes and 15-oxo triaromatic ketones were identified by synthesis. The 3-carboxyalkyl steranes probably originate from highly polar precursors yet unreported in living organisms. Our data suggest that micro-algae could be the major source of these compounds which seem to be indicators of high algal input rather than characteristic of evaporitic environments. The 15-oxo triaromatic ketones could be oxidation products of triaromatic steroid hydrocarbons formed during diagenesis, although their formation during work-up procedure could not be excluded.     

Differences in the mode of incorporation and biogenicity of the principal aliphatic constituents of a Type I oil shale

Compound-specific stable carbon isotope (δ ) measurements on the aliphatic hydrocarbons released from an immature Tertiary oil shale (Göynük, Turkey) via hydropyrolysis, following solvent extraction and a milder hydrogenation treatment, have further highlighted that significant compositional differences may exist between the principal aliphatic constituents of the solvent extractable (bitumen) phase and the insoluble macromolecular network (kerogen) comprising the bulk of sedimentary organic matter. Whilst inputs from diverse sources; including algae, bacteria and terrestrial higher plants, were implied from analysis of solvent-extractable alkanes, the much larger quantities of kerogen-bound n-alkyl constituents released by hydropyrolysis had a uniform isotopic signature which could be assigned to (freshwater) algae. Remarkably, the aliphatics bound to the kerogen by relatively weak covalent bonds, liberated via catalytic hydrogenation, appeared to comprise mainly allochthonous higher plant-derived n-alkanes. These results provide further compelling evidence that the molecular constituents of bitumen and, indeed, of low-yield kerogen degradation products, are not necessarily reliable indicators of kerogen biogenicity, particularly for immature Type I source rocks. The isotopic uniformity of aliphatic n-hydrocarbons released by the high-conversion hydropyrolysis step for the ultralaminae-rich Göynük oil shale, lends further support to the theory that selective preservation of highly resistant aliphatic biomacromolecules is an important mechanism in kerogen formation, at least for alginite.