Co-metabolic decolorization of a textile reactive dye by <Emphasis Type="Italic">Aspergillus fumigatus</Emphasis>

In the present study, a widely used reactive dye, Color Index (C.I.) Reactive Blue 268 was utilized for mycoremediation by Aspergillus fumigatus isolated from textile effluent. Complete decolorization of the test dye (0.1 g L^?1) was recorded within 6 days of static incubation at 27 °C in Czapek Dox broth (CDB). However, the isolate was unable to utilize the dye as a sole source of energy in Czapek Dox agar and CDB in absence of sucrose and obligate requirement of a labile carbon source, i.e., sucrose needed for induction of decolorization. Biosorption seems to play the pivotal role in decolorization as evident by coloring of the fungal biomass as that of dye color. The optimal conditions for the highest decolorization were found at 30 °C and pH 6.0 with 6-day-old inoculums supplemented with sucrose (10 g L^?1) and ammonium chloride (2 g L^?1) as a carbon and nitrogen source, respectively. The response of the isolate to increasing dye concentrations was found to be growth inhibitory. Surprisingly, about 65 % of dye decolorization was recorded with heat-inactivated biomass powder within 6 days of static incubation supporting the fact of fungal biosorption. Results of this study have established the candidature of the isolate for biotechnological removal of dyes from disreputable dying effluents.     

Toxicity effects of four typical nanomaterials on the growth of <Emphasis Type="Italic">Escherichia coli</Emphasis>, <Emphasis Type="Italic">Bacillus subtilis</Emphasis> and <Emphasis Type="Italic">Agrobacterium tumefaciens</Emphasis>

To offer an insight into the toxicity of nanomaterials (NM) on the growth of bacteria, Escherichia coli (E. coli), Bacillus subtilis (B. subtilis) and Agrobacterium tumefaciens (A. tumefaciens) were exposed to nano-Au, nano-Ag, nano-Fe and fullerene (C₆₀) in this study. As an effective bactericide, nano-Ag induced high toxicity on these three bacteria; C₆₀ could inhibit their growth; however, B. subtilis and E. coli could recover as exposure time extended. Nano-Au and nano-Fe had hardly any effect on three bacteria. A. tumefaciens showed the lowest resistance and slowest growth rate during exposure. Images obtained by scanning electron microscope (SEM) revealed that nano-Ag could cause damage to the cell structure of three bacteria at 1 μg/mL. Slight damage on E. coli was found when exposed to C₆₀, whereas no obvious physical damage was found after exposure to nano-Au or nano-Fe. It is assumed that surface activities of NM might be responsible for the different toxic effects on these bacteria.     

New thermoelastic parameters of natural <Emphasis Type="Italic">C</Emphasis>2/<Emphasis Type="Italic">c</Emphasis> omphacite

The compressibility at room temperature and the thermal expansion at room pressure of two disordered crystals (space group C2/c) obtained by annealing a natural omphacite sample (space group P2/n) of composition close to Jd₅₆Di₄₄ and Jd₅₅Di₄₅, respectively, have been studied by single-crystal X-ray diffraction. Using a Birch–Murnaghan equation of state truncated at the third order [BM3-EoS], we have obtained the following coefficients: V ₀ = 421.04(7) Å³, K _T0 = 119(2) GPa, K′ = 5.7(6). A parameterized form of the BM3 EoS was used to determine the axial moduli of a, b and c. The anisotropy scheme is β _c  ≤ β _a  ≤ β _b , with an anisotropy ratio 1.05:1.00:1.07. A fitting of the lattice variation as a function of temperature, allowing for linear dependency of the thermal expansion coefficient on the temperature, yielded α_V(1bar,303K) = 2.64(2) × 10⁻⁵ K⁻¹ and an axial thermal expansion anisotropy of α _b  ≫ α _a  > α _c . Comparison of our results with available data on compressibility and thermal expansion shows that while a reasonable ideal behaviour can be proposed for the compressibility of clinopyroxenes in the jadeite–diopside binary join [K _T0 as a function of Jd molar %: K _T0 = 106(1) GPa + 0.28(2) × Jd_(mol%)], the available data have not sufficient quality to extract the behaviour of thermal expansion for the same binary join in terms of composition.     

<Emphasis Type="Italic">BV I</Emphasis><Subscript><Emphasis Type="Italic">c</Emphasis></Subscript> photometry of RR Lyrae stars

We have obtained 26 372 CCD frames in the B, V, and I _c filters for 81 RR Lyrae stars in 2008–2010, using the 76-cm telescope of the South African Astronomical Observatory and the 40-cm telescope of the Cerro Armazones Observatory, North Catholic University (Chile) using an SBIG ST-10XME CCD camera. For 12 of these RR Lyrae stars, we also obtained 337 brightness measurements in the B and V bands in 2000–2001 using the 60-cm telescope of the High Altitude Mt. Maidanak Observatory (Republic of Uzbekistan). We present tables of observations, light curves, and improved light-curve elements for all these RR Lyrae stars. The Blazhko effect was detected for SU Hor.     

The Intertidal Burrowing Crab <Emphasis Type="Italic">Neohelice</Emphasis> (=<Emphasis Type="Italic">Chasmagnathus</Emphasis>) <Emphasis Type="Italic">granulata</Emphasis> Positively Affects Foraging of Rodents in South Western Atlantic Salt Marshes

The role of positive and indirect interactions is often crucial in communities with intense abiotic stress such as salt marshes. The burrowing crab, Neohelice (=Chasmagnathus) granulata, is the dominant benthic macroinvertebrate of southwest Atlantic marshes (southern Brazil to Northern Argentinean Patagonia), having strong direct and indirect effects on marsh soil and, in consequence, on marsh vegetation and primary consumers. In this work, we investigate if this crab indirectly modifies habitat use by the granivorous rodents, Akodon azarae and Oligoryzomys flavescens, by increasing nutrient availability and thus enhancing seed production by the marsh plant Spartina densiflora. The study was conducted at the Mar Chiquita Coastal Lagoon, Argentina (37°32′ S). Rodent frequencies in S. densiflora were positively correlated with crab densities throughout the low and middle marsh. Additionally, the highest quality of S. densiflora and inflorescence density was recorded at the highest crab densities. Experimental manipulation of crab densities shows that N. granulata indirectly enhances the performance of S. densiflora (e.g., decreased fiber content and C/N ratios) and increases density of seeds. Moreover, N. granulata also facilitates S. densiflora seed availability to rodents by concentrating them in sediment mound at their burrows entrances. Experimental rodent exclusions showed that rodent species used S. densiflora seeds, a variable positively related to crab burrow density. Thus, our results show that N. granulata drives the granivorous rodent distribution and the intensity of seeds–rodent interaction trough facilitative and indirect interactions in marsh community.     

Toxicity of vegetable tannin extract from <Emphasis Type="Italic">Acacia mearnsii</Emphasis> in <Emphasis Type="Italic">Saccharomyces cerevisiae</Emphasis>

Vegetable tannins are complex polyphenols, which occur widely in nature. Traditionally, natural tannins have been used for tanning leather. In Brazil, the main tannin-based products are obtained from Acacia mearnsii, which is a leguminous tree native to Southeastern of Australia, and the first seeds were brought to Brazil in 1928. The main cultivation of acacia was established in Rio Grande do Sul state due to the possibility of raw material for charcoal, adhesives to fuel and for tanning leather. The leather tanning processes based on plant tannins are thought to be less harmful than chromium-based tanning, and it has been used as a sustainable alternative. However, there is scarce information about the environmental impact of the leather tanning processes, with most studies reporting inhibitory effects against microorganisms at high doses and stimulatory and positive health effects at low concentrations. The aim of this study was to evaluate the toxicity of tannin preparations extracted from A. mearnsii in Saccharomyces cerevisiae. Vegetable tannin toxicity in yeast was tested using two tannin treatments in different concentrations. In general, the results showed toxicity of vegetable in yeast, BY4741 and gsh1Δ strains.     

Evaluation of <Emphasis Type="Italic">smtA</Emphasis> expression and <Emphasis Type="Italic">E. coli</Emphasis> survival against cadmium ions

Cadmium and other heavy metals lead to environmental danger, and these heavy metals are a great threat to human and other animal’s health. Investigation of the relationship between survival of E. coli and metallothionein smtA gene expression against cadmium ion is the goal of this research. Survival of recombinant bacteria containing smtA gene was analyzed against various concentrations of cadmium chloride salt using optical density (OD). At the resistive range, recombinant bacteria were subjected to different treatments. At the logarithmic phase of bacterial growth, sampling, RNA extraction and cDNA synthesis were performed and smtA gene expression was then analyzed by real-time PCR using designed primers for smtA gene and Amp resistance (as the calibrator gene). Relative gene expression was calculated using the ??C_t method. The resistive range against cadmium chloride was 0.5–0.7 mM (minimum inhibitory concentration (MIC = 0.5 mM)). Survival and gene expression analysis showed that in induced bacteria, smtA expression was increased significantly that in turn conferred resistance to cadmium chloride prominently. There was a direct relationship between increased smtA gene expression and survival of the recombinant bacteria. Therefore, our result may help to confront to cadmium metal environmental pollution using overexpression of smtA gene expression in recombinant bacteria.     

Hybridization and Plasticity Contribute to Divergence Among Coastal and Wetland Populations of Invasive Hybrid Japanese Knotweed <Emphasis Type="Italic">s</Emphasis>.<Emphasis Type="Italic">l</Emphasis>. (<Emphasis Type="Italic">Fallopia</Emphasis> spp.)

Japanese knotweed s.l. (Fallopia spp.) is a highly invasive clonal plant, best known from roadside and riparian habitats. Its expansion into beaches on Long Island, NY, USA, represents a major habitat shift. I surveyed populations from beaches and wetlands and conducted a common garden experiment to test for variation in drought tolerance and phenotype among populations and habitats. All populations were composed mostly of first- and later-generation hybrids. I found significant variation among populations in growth, lamina size, specific leaf area (SLA), and biomass allocation, in both the field and the common garden. Lamina size, growth, and root-to-shoot responded plastically to drought treatment. Wetland populations tolerated drought as well as beach populations. Differentiation in SLA between habitats suggests that some selection for beach genotypes may have occurred. It appears that both hybridization and phenotypic plasticity are contributing to the expansion of Fallopia spp. into novel habitat.     

<Emphasis Type="Italic">An </Emphasis><Emphasis Type="Italic">Inconvenient Truth</Emphasis>: a focus on its portrayal of the hydrologic cycle

An Inconvenient Truth (AIT) has earned Al Gore an Oscar and a share of the 2007 Nobel Peace Prize and has been widely acclaimed by the mass media. However, significant errors exist in the film, owing to alarmism and exaggeration. As this forum does not provide for a detailed examination of these errors, this paper will focus only on the portrayal of the hydrologic cycle by AIT—precipitation and floods, soil moisture and droughts, and storminess. AIT argues that precipitation and intense rainfalls, floods, droughts, and the total number, intensity, and duration of tropical cyclones have all increased due exclusively to anthropogenically-driven climate change; indeed, AIT paints a picture of near scientific certainty with an overwhelming bias toward catastrophe scenarios. A closer look at the science, however, reveals that the data do not support these claims and that the scientific community is divided as to what the impact of anthropogenic climate change on the hydrologic cycle will be. Thus, the film gives a false impression of both the current state of climate change and that ‘the science is settled’.

Utilization of <Emphasis Type="Italic">Spartina</Emphasis>- and <Emphasis Type="Italic">Phragmites</Emphasis>-Derived Dissolved Organic Matter by Bacteria and Ribbed Mussels (<Emphasis Type="Italic">Geukensia demissa</Emphasis>) from Delaware Bay Salt Marshes

Phragmites australis has been invading Spartina-alterniflora-dominated salt marshes throughout the mid-Atlantic. Although, Phragmites has high rates of primary production, it is not known whether this species supports lower trophic levels of a marsh food web in the same manner as Spartina. Using several related photochemical and biological assays, we compared patterns of organic matter flow of plant primary production through a key salt marsh metazoan, the ribbed mussel (Geukensia demissa), using a bacterial intermediate. Dissolved organic matter (DOM) was derived from plants collected from a Delaware Bay salt marsh and grown in the laboratory with ¹⁴C-CO₂. Bacterial utilization of plant-derived DOM measured as carbon mineralization revealed that both species provided bioavailable DOM to native salt marsh bacteria. Total carbon mineralization after 19 days was higher for Spartina treatments (36% ¹⁴CO₂ ± 3 SE) compared with Phragmites treatments (29% ±2 SE; Wilcoxon–Kruskal–Wallis rank sums test, P < 0.01). Pre-exposing DOM to natural sunlight only enhanced or decreased bioavailability of the DOM to the bacterioplankton during initial measurements (e.g., 7 days or less) but these differences were not significant over the course of the incubations. Mixtures of ¹⁴C-labeled bacterioplankton (and possibly organic flocs) from ¹⁴C-DOM treatments were cleared by G. demissa at similar rates between Spartina and Phragmites treatments. Moreover, ¹⁴C assimilation efficiencies for material ingested by mussels were high for both plant sources ranging from 74% to 90% and not significantly different between plant sources. Sunlight exposure did not affect the nutritional value of the bacterioplankton DOM assemblage for mussels. There are many possible trophic and habitat differences between Spartina- and Phragmites-dominated marshes that could affect G. demissa but the fate of vascular plant dissolved organic carbon in the DOM to bacterioplankton to mussel trophic pathway appears comparable between these marsh types.     

Physiological Constraints in Juvenile <Emphasis Type="Italic">Ostrea chilensis</Emphasis> Fed the Toxic Dinoflagellate <Emphasis Type="Italic">Alexandrium catenella</Emphasis>

Frequent blooms of the dinoflagellate Alexandrium catenella in southern Chile encouraged undertaking the present study which uses the oyster Ostrea chilensis as a model for evaluating the feeding, growth, lipid storage and mortality responses to diets containing paralytic shellfish poisoning (PSP) produced by A. catenella. Medium-term (30 days) physiological responses of two groups of juvenile oysters were measured every 10 days. Five replicates were exposed to diets containing A. catenella and other five replicates were fed with a diet containing the non-toxic algae Isochrysis galbana. Diets were continuously supplied at a concentration of 2 mg L^?1, in which the feeding and metabolic activity was measured, and the scope for growth calculated. Lipids storage, actual growth and mortality were also measured every 10 days. The results showed that the toxic diet has dramatic negative effects on feeding and metabolism of the juvenile individuals of O. chilensis, with high reduction of the lipid storage and growth. Mortality was also increased in individuals fed with the contaminated diet. This study supports the conclusion that the toxic dinoflagellate A. catenella restricts the energy acquisition in the juvenile O. chilensis, an important fishery and aquaculture resource in southern Chile.     

Biodegradation of ortho-dimethyl phthalate by a binary culture of <Emphasis Type="Italic">Variovorax</Emphasis> sp. BS1 and <Emphasis Type="Italic">Achromobacter denitrificans</Emphasis>

Binary mixture of Variovorax sp. BS1 and Achromobacter denitrificans degraded >99 % of 300 mg l^?1 of ortho-dimethyl phthalate (DMP) within 24 h of incubation at 30 °C. Rate of degradation of DMP followed the order: A. denitrificans > binary mixture > Variovorax sp. BS1. Transient intermediate metabolites were not detected using HPLC analyses at any time points using Variovorax sp. BS1 and binary mixture. However, using pure culture of A. denitrificans, monomethyl phthalate was accumulated during the course of DMP biodegradation which disappeared with time of incubation. Binary mixture of Variovorax sp. BS1 and A. denitrificans exhibited better efficiency in terms of biodegradation of DMP as compared to either individual bacterial strain. In addition, fluorescence in situ hybridization technique was used to estimate the population dynamics of Variovorax sp. BS1 in binary mixture. A. denitrificans in mixed culture were estimated by subtracting total number of cells of Variovorax sp. BS1 from the total counts of microbial cells using an epifluorescence microscope after staining with 4′,6-diamidino-2-phenylindole. Results obtained at mid-exponential growth phase suggested the abundance of both bacterial strains as primary degraders.     

Toxinogenicity and cytotoxicity of <Emphasis Type="Italic">Alternaria,Aspergillus</Emphasis> and <Emphasis Type="Italic">Penicillium</Emphasis> moulds isolated from working environments

There is currently limited research available on the secondary metabolites of moulds in workplaces. The aim of this study was to determine the mould contamination in museums (N = 4), composting plants (N = 4) and tanneries (N = 4) and the secondary metabolite profiles of Alternaria, Aspergillus and Penicillium isolates from these workplaces. Alternaria, Aspergillus and Penicillium species were identified using the ITS1/2 sequence of the rDNA region. Mould metabolites were quantitatively analysed on standard laboratory medium and mineral medium containing materials specific to each workplace using liquid chromatography-mass spectrometry. We also examined the cytotoxicity of the moulds using MTT (3-(4,5-dimethylthiazolyl-2)-2,5-diphenyltetrazolium bromide) assays. Air microbiological contamination analyses showed a number of microorganisms, ranging from 2.4 × 10³ CFU m^?3 (composting plants) to 6.8 × 10⁴ CFU m^?3 (tanneries). We identified high percentages of Alternaria, Aspergillus and Penicillium moulds (air 57–59%, surfaces 10–65%) in all workplaces. The following moulds were the most cytotoxic (>90%): Alternaria alternata, A. limoniasperae, Aspergillus flavus, Penicillium biourgeianum, P. commune and P. spinulosum. The same mould species isolated from different working environments exhibited varying toxigenic and cytotoxic properties. Modifying the culture medium to simulate environmental conditions most often resulted in the inhibition of secondary metabolite production. Moulds isolated from the working environments produced the following mycotoxins (ng g^?1): chanoclavines (0.28–204), cyclopiazonic acid (27.1–1045), fumigaclavines (0.33–10,640,000), meleagrin (0.57–13,393), roquefortins (0.01–16,660), rugulovasines (112–220), viridicatin (0.12–957), viridicatol (4.23–2753) and quinocitrinines (0.07–1104), which may have a negative impact on human health.     

Foraging by Two Estuarine Fishes, <Emphasis Type="Italic">Fundulus heteroclitus</Emphasis> and <Emphasis Type="Italic">Fundulus majalis</Emphasis>, on Juvenile Asian Shore Crabs (<Emphasis Type="Italic">Hemigrapsus sanguineus</Emphasis>) in Western Long Island Sound

The Asian shore crab, Hemigrapsus sanguineus, is a recent and particularly successful introduction to the east coast of the USA. Little research has been done on the utilization of Asian shore crabs for food by native species, a potential form of biocontrol. Over a 4-year period, we examined the gut contents of cogeners, Fundulus heteroclitus and Fundulus majalis, collected from two embayments in western Long Island Sound for the presence of juvenile H. sanguineus. Frequency (percent) of occurrence of food items in the guts of both species varied over year and study site. Asian shore crabs were consumed more often by F. heteroclitus than by F. majalis, but predation pressure by both species was low. Only 13% of F. heteroclitus and 7.7% of F. majalis found with food in their guts had ingested Asian shore crab remains. Of those, 1/3 had consumed whole crabs; the rest had only autotomized appendages in their guts. The mean carapace width of juvenile Asian shore crabs ingested by F. heteroclitus was 3.59 ± 2.22 mm (N = 33). Results of our study on killifish predation support the hypothesis that H. sanguienus abundance is partly explained by reduced impact of native predators (i.e., the “enemy release hypothesis”). Predation pressure of other potential enemies on both planktonic and benthic stages of the Asian shore crab must be investigated, however, to understand the full impact of predation on H. sanguineus population dynamics.     

Ecophysiology of the Olympia Oyster, <Emphasis Type="Italic">Ostrea lurida</Emphasis>, and Pacific Oyster, <Emphasis Type="Italic">Crassostrea gigas</Emphasis>

The native Olympia oyster, Ostrea lurida, was once abundant in many US Pacific Northwest (PNW) estuaries, but was decimated by human activity in the late nineteenth early to twentieth centuries. Having been the subject of only few modern, detailed studies, a dearth of basic physiological information surrounded O. lurida and how it compared to the now dominant, non-native Pacific oyster, Crassostrea gigas. Utilizing laboratory and in situ studies in Yaquina Bay, OR, we explored the clearance rates of both species across a wide range of conditions. Pacific oysters not only had greater size-specific clearance rates than Olympia oysters, but also had a lower optimum temperature. Clearance rates for both species were reduced at lower salinity, at lower organic content, and at higher turbidity. Clearance rate models were constructed for each species using three approaches: (1) a single mechanistic model that incorporated feeding response functions of each species to the effects of temperature, salinity, turbidity, and seston organic content based on laboratory studies; (2) another additive model in which the number and type of response functions from laboratory studies were allowed to vary; and (3) a statistical model that utilized environmental data collected during in situ feeding trials. Clearance rate models that correlated feeding activity with in situ environmental data were found to often better predict oyster clearance rates (based on Adj R ²) for both species in Yaquina Bay, OR, than mechanistic, additive models based on laboratory feeding response functions; however, in situ correlative models varied in accuracy by species and season. This work represents important first steps towards better understanding the physiological ecology of the native Olympia oyster and how it differs from introduced and now dominant Pacific oyster.     

Enzymatic degradation of polyhydroxyalkanoate using lipase from <Emphasis Type="Italic">Bacillus subtilis</Emphasis>

Polyhydroxyalkanoates (PHAs) are an important class of biodegradable polymers synthesized by a few bacteria under nutrient-limiting conditions. In this study, the lipase-catalysed degradation of PHA synthesized by Enterobacter sp. was monitored. For this, the lipase-encoding gene from Bacillus subtilis DI2 was PCR-amplified, cloned into a T vector system and sequenced. It was expressed in Escherichia coli DH5α cells, the recombinant enzyme was purified 24.25-fold, and its molecular weight was determined to be around 28 kDa. When PHA biodegradation studies were carried out with this enzyme, gel permeation chromatography showed 21.3 and 28.3 % molecular weight decrease and weight loss, respectively. Further, scanning electron micrographs revealed alterations in polymer surface morphology. Changes in molecular vibrations were noticed in the FTIR spectra. When the chemical shifts in NMR spectra were studied, a steep reduction in area under the peak at 1.57 ppm was observed. In the heating range of 30–930 °C employed during thermogravimetry analysis, the degraded sample showed a total of 45.82 % weight loss, as against 18.89 % for the native sample. The melting temperature (T _m) of the polymer was also brought down from 126.22 to 118.18 °C, as inferred from differential scanning calorimetry. Lipase-catalysed chain scission reactions could thus be used to generate low molecular weight functional biopolymers with wide-ranging pharmaceutical applications, such as in sustained drug release.