A percent-of-flow approach for managing reductions of freshwater inflows from unimpounded rivers to Southwest Florida estuaries

The Southwest Florida Water Management District has implemented a management approach for unimpounded rivers that limits withdrawals to a percentage of streamflow at the time of withdrawal. The natural flow regime of the contributing river is considered to be the baseline for assessing the effects of withdrawals. Development of the percent-of-flow approach has emphasized the interaction of freshwater inflow with the overlap of stationary and dynamic habitat components in tidal river zones of larger estuarine systems. Since the responses of key estuarine characteristics (e.g., isohaline locations, residence times) to freshwater inflow are frequently nonlinear, the approach is designed to prevent impacts to estuarine resources during sensitive low-inflow periods and to allow water supplies to become gradually more uvailable as inflow increases. A high sensitivity to variation at low inflow extends to many invertebrates and fishes that move upstream and downstream in synchrony with inflow. Total numbers of estuarine-resident and estuarine-dependent organisms have been found to decrease during low-inflow periods, including mysids, grass shrimp, and juveniles of the bay anchovy and sand seatrout. The interaction of freshwater inflow with seasonal processes, such as phytoplankton production and the recruitment of fishes to the tidal-river nursery, indicates that withdrawal percentages during the springtime should be most restrictive. Ongoing efforts are oriented toward refining percentage withdrawal limits among seasons and flow ranges to account for shifts in the responsiveness of estuarine processes to reductions in freshwater inflow.     

A conceptual model of estuarine freshwater inflow management

As humans continue to influence the quantity, timing, and quality of freshwater input to estuaries, it is becoming increasingly common for policies to be enacted that mandate the establishment of freshwater inflow criteria that will serve to preserve and protect estuarine ecosystems. This paper reviews the scientific literature describing how changes in freshwater inflow affect estuaries, proposes a conceptual model that explores the roles of scientists, citizens, politicians, and managers in the management of freshwater inflow to estuaries, and uses the model to explore the ways in which freshwater inflow is managed in a variety of estuaries. The scientific review is organized to provide an overview of the connections between freshwater inflow (in terms of the quantity, quality, and timing of water delivery), estuarine conditions (such as salinity and concentrations of dissolved and particulate material), and estuarine resources (such as the distribution and abundance of organisms), and to highlight our understanding of the causative mechanisms that underlie the relationships among these variables. The premise of the conceptual model is that the goal of estuarine freshwater inflow policy is to protect those resources and functions that we as a society value in estuaries, and that management measures use scientific information about the relationships among inflow, conditions, and resources to establish inflow standards that can meet this goal. The management approach can be inflow-based (flow is kept within some prescribed bounds under the assumption that taking too much away is bad for the resources), condition-based (inflow standards are set in order to maintain specified conditions in the estuary), or resource-based (inflow standards are set based on the requirements of specific resources), but each of these is carried out by regulating inflow. This model is used as a framework to describe the development of freshwater inflow criteria for estuaries in Texas, Florida, and California.     

A resource-based framework for establishing freshwater inflow requirements for the Suwannee River estuary

The availability of methods for establishing freshwater inflow requirements for estuaries lags behind those for establishing flow requirements in riverine ecosystems. Some of the basic principles and approaches for establishing riverine flow requirements may be applicable to estuaries. An emerging approach for establishing freshwater inflow needs for the Suwannee River estuary involves maintaining a natural inflow regime (in terms of magnitude, frequency, duration, and timing of freshwater flows) and identifying important habitat targets to be protected. The salinity-river flow conditions needed to sustain the habitat targets in their existing condition are then identified. A variety of tools are employed, such as salinity metrics, biological metrics, limits of distribution of communities or habitats, and landscape-scale characteristics to define the salinity and corresponding flow ranges needed to protect and maintain the resource targets. With this information, combined with use of models to evaluate flow-salinity relationships and various withdrawal scenarios, river flow criteria can be set which address the freshwater inflow requirements to maintain these ranges. Subsequentmonitoring and research is undertaken to evaluate the effectiveness of the river flow criteria in protecting the estuarine resource targets. This information can be used to subsequently confirm, refine, or modity the flow criteria.     

A Before–After–Control–Impact Analysis of the Effects of a Mississippi River Freshwater Diversion on Estuarine Nekton in Louisiana, USA

Since 1991, the Caernarvon Freshwater Diversion has been reintroducing Mississippi River water into a previously hydrologically isolated estuary in an effort to restore wetlands. To determine the effect of freshwater inflow on estuarine nekton community structure, a Before?CAfter?CControl?CImpact study design was applied. As a result of the opening, salinities in the impact area decreased, and the nekton community structure in the estuary changed significantly. Species of economical or ecological importance either increased in biomass or exhibited no response to the opening of the diversion. Higher abundances of small fish were observed in the area receiving freshwater flow, which is an indication that the area serves as a refuge from large marine predators. Because a salinity gradient was established, as opposed to a uniform but lower salinity regime, aquatic habitat was available to nekton species from a wide spectrum of salinity tolerances.     

Methods for determining minimum freshwater inflow needs of Texas bays and estuaries

In response to legislative directives beginning in 1975, the Texas Water Development Board (TWDB) and the Texas Parks and Wildlife Department (TPWD) jointly established and currently maintain a data collection and analytical study program focused on determining the effects of and needs for freshwater inflows into the state's 10 bay and estuary systems. Study elements include hydrographic surveys, hydrodynamic modeling of circulation and salinity patterns, sediment analyses, nutrient analyses, fisheries analyses, freshwater inflow optimization modeling, and verification of needs. For determining the needs, statistical regression models are developed among freshwater inflows, salinities, and coastal fisheries. Results from the models and analyses are placed into the Texas Estuarine Mathematical Programming (TxEMP) model, along with information on salinity viability limits, nutrient budgets, fishery biomass ratios, and inflow bounds. The numerical relationships are solved within the constraints and limits, and optimized to meet state management objectives for maintenance of biological productivity and overall ecological health. Solution curves from the TxEMP model are verified by TWDB’s hydrodynamic simulation of estuarine circulation and salinity structure, which is evaluated against TPWD’s analysis of species abundance and distribution patterns in each bay and estuary system. An adequate system-wide match initially verifies the inflow solution. Long-term monitoring is recommended in order to verify that implementation of future water management strategies maintain ecological health of the estuaries and to provide an early warning of needs for adaptive management strategies.     

Using submerged aquatic vegetation to establish minimum and maximum freshwater inflows to the Caloosahatchee estuary, Florida

Species of submerged aquatic vegetation (SAV) are frequently used in the management of estuarine systems to set restoration goals, nutrient load reduction goals, and water quality targets. As human need for water increases, the amount of freshwater required by estuaries has become an increasingly important issue. While the, science of establishing the freshwater needs of estuaries is not well developed, recent attempts have emphasized the freshwater requirements of fisheries. We evaluate the hypothesis that SAV can be used to establish freshwater inflow needs. Salinity tolerance data from laboratory and field studies of SAV in the Caloosahatchee estuary, Florida, are used to estimate a minimum flow required to maintain the salt-tolerant freshwater species,Vallisneria americana, at the head of the estuary and a maximum flow required to prevent mortality, of the marine speciesHalodule wrightii at its mouth. ForV. americana, laboratory experiments showed that little or no growth occurred between 10‰ and 15‰ In the field, lower shoot densities (<400 shoots m^?2) were associated with salinities greater than 10‰. Results forH. wrightii were more variable than forV. americana. Laboratory experiments indicated that mortality could occur at salinities <6‰, with little growth occurring between 6‰ and 12‰. Field data indicated that higher blade densities (>600 blades m^?2) tend to occur at salinities greater than 12‰ Relationships between salinity in the estuary and discharge from the Caloosahatchee River indicated that flows>8.5 m³ s^?1 would produce tolerable salinity (<10‰) forV. americana and flows<89 m³ s^?1 would avoid lethal salinities (<6‰) forH. wrightii.     

A framework for estimating ecological risks posed by nutrients and trace elements in the Patuxent River

The continued urbanization of coastal watersheds can influence the quality of water that enters rivers and estuaries. Intelligent management of aquatic resources will require the capability to quantitatively assess and evaluate the impacts of alterations in surface waters that result from changes in patterns of land use. An aquatic ecosystem model was developed and linked to an empirical landscape model to estimate ecological risks posed by nutrients and potentially toxic trace elements (copper [Cu], cadmium [Cd], arsenic [As]) in the Patuxent River, Maryland. The empirical landscape model translated reductions in croplands within the Patuxent River watershed into corresponding changes in nitrate estimated to enter the river. Trace element concentrations were increased in relation to urbanization associated with the loss of agricultural lands in the watershed. The aquatic ecosystem model used the altered inputs of nutrients and trace elements to estimate changes in the annual production dynamics of selected producer and consumer populations within the Patuxent River. The models were implemented for four mainstem locations that defined a transect from the upper freshwater portion of the river to downstream estuarine locations. Ecological impacts were estimated for 4 hypothetical changes in land use that consisted of 10%, 7.5%, 5%, and 2.5% watershed coverage by cropland. Impacts were estimated as the probability (risk) of different magnitudes of increases or decreases in total annual production of populations representative of freshwater and estuarine food webs in the Patuxent River.     

Nutrient inputs to the Choptank River estuary: Implications for watershed management

Degraded water quality due to water column availability of nitrogen and phosphorus to algal species has been identified as the primary cause of the decline of submersed aquatic vegetation in Chesapeake Bay and its subestuaries. Determining the relative impacts of various nutrient delivery pathways on estuarine water quality is critical for developing effective strategies for reducing anthropogenic nutrient inputs to estuarine waters. This study investigated temporal and spatial patterns of nutrient inputs along an 80-km transect in the Choptank River, a coastal plain tributary and subestuary of Chesapeake Bay, from 1986 through 1991. The study period encompassed a wide range in freshwater discharge conditions that resulted in major changes in estuarine water quality. Watershed nitrogen loads to the Choptank River estuary are dominated by diffuse-source inputs, and are highly correlated to freshwater discharge volume. in years of below-average freshwater discharge, reduced nitrogen availability results in improved water quality throughout most of the Choptank River. Diffuse-source inputs are highly enriched in nitrogen relative to phosphorus, but point-source inputs of phosphorus from sewage treatment plants in the upper estuary reduce this imbalance, particularly during summer periods of low freshwater discharge. Diffuse-source nitrogen inputs result primarily from the discharge of groundwater contaminated by nitrate. Contamination is attributable to agricultural practices in the drainage basin where agricultural land use predominates. Groundwater discharge provides base flow to perennial streams in the upper regions of the watershed and seeps directly into tidal waters. Diffuse-source phosphorus inputs are highly episodic, occurring primarily via overland flow during storm events. Major reductions in diffuse-source nitrogen inputs under current landuse conditions will require modification of agricultural practices in the drainage basin to reduce entry rates of nitrate into shallow groundwater. Rates of subsurface nitrate delivery to tidal waters are generally lower from poorly-drained versus well-drained regions of the watershed, suggesting greater potential reductions of diffuse-source nitrogen loads per unit effort in the well-drained region of the watershed. Reductions in diffuse-source phosphorus loads will require long-term management of phosphorus levels in upper soil horizons. *** DIRECT SUPPORT *** A01BY074 00021     

Oceanic and Hydrologic Influences on Flow and Water Properties in the St. Jones River Estuary,Delaware

Influences of tides, freshwater discharge, and winds on water properties in the St. Jones River estuary (USA), a Delaware National Estuarine Research Reserve, were investigated using multiyear records of sea level, salinity, and turbidity, supplemented by a current profiler time series in 2007. Results demonstrate that instantaneous properties fluctuate with semidiurnal tides and resonant overtides, whereas tidal mean variations are forced by seasonal freshwater inflow and offshore winds. Mean sea level and salinity are highest in summer and vary with seasonal water temperature and rainfall, whereas sea level variability and turbidity are highest in winter on account of storm effects. Salinity and discharge modeling suggest that much (43–65%) of the freshwater resident in the estuary is derived from non-point sources below the head of tide. This diffuse freshwater inflow produces a seaward surface slope and weak mean current, which temporarily reverses under the influence of storm–wind setup within Delaware Bay.     

Freshwater inflow and estuarine variability in the Gamtoos Estuary, South Africa

The Gamtoos is a shallow flood-tidal estuary located on the south coast of South Africa. Even though it has an extensive catchment area, dams limit runoff and mean freshwater inflow is estimated at less than 1 m³ s^?1, and the flood tidal deltas constrict and at times even close the mouth. The results presented here derive from an intensive measurement program carried out over a 3-wk period at the end of 1992, immediately after good rains in the Gamtoos catchment region. Freshwater inflow increased to more than 10 m³ s^?1, driving the salt wedge downstream and resulting in intense haloclines in the mid-estuary region. The program monitored the return to more average estuarine structures, and even though tidal exchange was restricted, marked differences occurred in stratification at neap and spring tides; tidal exchanges provided the dominant mixing forces. It is found that the shallower upper reaches of the estuary are flushed with relatively small increases in freshwater inflow, though a balance exists with the tidal exchanges through the constricted mouth. The variation in the position of the salt wedge and in the salinity stratification can have substantial implications for biota.     

Estimation of net physical transport and hydraulic residence times for a coastal plain estuary using box models

A box model based on salinity distributions and freshwater inflow measurements was developed and used to estimate net non-tidal physical circulation and hydraulic residence times for Patuxent River estuary, Maryland, a tributary estuary of Chesapeake Bay. The box model relaxes the usual assumption that salinity is at steady-state, an important improvement over previous box model studies, yet it remains simple enough to have broad appeal. Average monthly 2-dimensional net non-tidal circulation and residence times for 1986–1995 are estimated and related to river flow and salt water inflow as estimated by the box model. An important result is that advective exchange at the estuary mouth was not correlated with Patuxent River flow, most likely due to effects of offshore salinity changes in Chesapeake Bay. The median residence time for freshwater entering at the head of the estuary was 68 d and decreased hyperbolically with increasing river flow to 30 d during high flow. Estimates of residence times for down-estuary points of origin showed that, from the head of the estuary to its mouth, control of flushing changed from primarily river flow to other factors regulating the intensity of gravitational circulation.     

Spatial and temporal variation of the nekton and hyperbenthos from a temperate European estuary with regulated freshwater inflow

The aquatic macrofauna of the Guadalquivir estuary were sampled (1 mm mesh persiana net) at 5 sampling sites located along the entire (except the tidal freshwater region) estuarine gradient of salinity (outer 50 km). A total of 134 fish and macroinvertebrate species was collected but only 62 were considered common or regularly present in the estuary. Univariate measures of the community structure showed statistically significant differences among sampling sites: species richness, abundance, and biomass decreased in the upstream direction, being positively correlated with the salinity. Temporal differences of these three variables were also statistically significant. While a clear seasonal pattern (minimum densities in winter and maximum in spring-summer) was observed for abundance and biomass, no such pattern existed for the number of species. Mysids was the most dominant group throughout the estuary (96% to 99% of abundance; 49% to 85% of biomass), although fish biomass was also important at the outer estuary (36% to 38%). Multivariate analyses indicated highly significant spatial variation in the macrofaunal communities observed along the salinity gradient. These analyses suggest that the underlying structure was a continuum with more or less overlapping distributions of the species dependent on their ability to tolerate different physicochemical conditions. There were also significant temporal (intermonthly + interannual) variation of the estuarine community; the relative multivariate dispersion indicated that monthly variation was more considerable (relative multivariate dispersion >1) at the outer part of the estuary during the wet year (last 20 km) and was higher in the inner stations during the dry year (32 to 50 km from the river mouth). Since a clear negative exponential relationship was observed between the freshwater input (from a dam located 110 km upstream) and water salinity at all sampling stations, it is concluded that the human freshwater management is probably affecting the studied estuarine communities. While the higher seasonal (long-term) stability of the salinity gradient, due to the human control of the freshwater input, may facilitate the recruitment of marine species juveniles during the meteorologically unstable early-spring, the additional (short-term) salinity fluctuations during the warm period may negatively affect species that complete their lifecycle within the estuary.     

A comparison of residence time calculations using simple compartment models of the Altamaha River estuary, Georgia

The residence and flushing times of an estuary are two different concepts that are often confused. Flushing time is the time required for the freshwater inflow to equal the amount of freshwater originally present in the estuary. It is specific to freshwater (or materials dissolved in it) and represents the transit time through the entire system (e.g., from head of tide to the mouth). Residence time is the average time particles take to escape the estuary. It can be calculated for any type of material and will vary depending on the starting location of the material. In the literature, the term residence time is often used to refer to the average freshwater transit time and is calculated as such. Freshwater transit time is a more precise term for a type of residence time (that of freshwater, starting from the head of the estuary), whereas residence time is a more general term that must be clarified by specifying the material and starting distribution. We explored these two mixing time scales in the context of the Altmaha River estuary, Georgia, and present a comparison of techniques for their calculation (fraction of freshwater models and variations of box models). Segmented tidal prism models, another common approach, have data requirements similar to other models but can be cumbersome to implement properly. Freshwater transit time estimates from simple steady-state box models were virtually, identical to flushing times for four river-flow cases, as long as boxes were scaled appropriately to river flow, and residence time estimates from different box models were also in good agreement. Mixing time estimates from box models, were incorrect when boxes were imporperly scaled. Mixing time scales vary nonlinearly with river flow, so characterizing the range as well as the mean or median is important for a thorough understanding of the potential for within-estuary processing. We are now developing an imporved box model that will allow the calculation of a variety of mixing time scales using simulations with daily variable river discharge.     

Will lowering estuarine salinity increase Gulf of Mexico oyster landings?

Previous studies provide conflicting opinions on whether lower than average salinities in Gulf of Mexico (GOM) estuaries are likely to increase or decrease oyster harvests (Crassostrea virginica), which represented 69% and 54% of the United States oyster landings by weight, and dockside value, respectively, in 2003. The present study examined a 54-yr record (1950–2003) of oyster harvests and river discharge in five major estuaries in GOM states (Florida, Alabama, Mississippi, Louisiana, and Texas). Oyster landings were inversely related to freshwater inflow. Peaks in landings, 21 of 23 in West Florida, Alabama, Mississippi, and Texas combined, were coincidental with lows in river discharge from the major rivers in the estuaries. Lows in landings in these states (17 of 19) coincided with peaks in discharge of the major rivers feeding their estuaries. Landings in Breton Sound, Louisiana, were also inversely related to river discharge. The only exception to this pattern was for landings in the Plaquemines Parish, Louisiana, part of the Breton Sound estuary, where there were higher landings following increased Mississippi River discharge. The Bonnet Carré spillway, completed in 1931, diverts flood waters from the Mississippi River to Lake Pontchartrain, and it has been opened to reduce flood heights in 1937, 1950, 1973, 1975, 1979, 1983, and 1997. Twenty-five of 28 times after the spillway was opened, oyster landings in Mississippi were lower than in the other four states. The inverse relationship between freshwater inflow and oyster landings suggests that the proposed Bonnet Carré Freshwater Project, designed to reduce estuarine salinity, cannot be justified on the basis of anticipated higher oyster yields in Mississippi or Louisiana. Manipulating estuarine salinity in the GOM should be done within the context of the whole estuary and not just part of the estuary.     

Dissolved inorganic carbon (DIC) and hydrologic mixing in a subtropical riverine estuary,southwest Florida,USA

Physical and chemical parameters were measured in a subtropical estuary with a blind river source in southwest Florida, United States, to assess seasonal discharge of overland flow and groundwater in hydrologic mixing. Water temperature, pH, salinity, alkalinity, dissolved inorganic carbon (DIC), δ¹⁸O, and δ¹³C_DIC varied significantly due to seasonal rainfall and climate. Axial distribution of the physical and chemical parameters constrained by tidal conditions during sampling showed that river water at low tide was a mixture of freshwater from overland flow and saline ground-water in the wet season and mostly saline groundwater in the dry season. Relationships between salinity and temperature, δ¹⁸O, and DIC for both the dry and wet seasons showed that DIC was most sensitive to seawater mixing in the estuary as DIC changed in concentration between values measured in river water at the tidal front to the most seaward station. A salinity-δ¹³C_DIC model was able to describe seawater mixing in the estuary for the wet season but not for the dry season because river water salinity was higher than that of seawater and the salinity gradient between seawater and river water was small. A DIC-δ¹³C_DIC mixing model was able to describe mixing of carbon from sheet flow and river water at low tide, and river water and seawater at high tide for both wet and dry seasons. The DIC-δ¹³C_DIC model was able to predict the seawater end member DIC for the wet season. The model was not able to predict the seawater end member DIC for the dry season data due to secondary physical and biogeochemical processes that altered estuarine DIC prior to mixing with seawater. The results of this study suggest that DIC and δ¹³C_DIC can provide additional insights into mixing of river water and seawater in estuaries during periods where small salinity gradients between river water and seawater and higher river water salinities preclude the use of salinity-carbon models.     

The calculation of estuarine turnover times using freshwater fraction and tidal prism models: A critical evaluation

Freshwater fraction and tidal prism models are simple methods for estimating the turnover time of estuarine water. The freshwater fraction method prominently features flushing by freshwater inflow and has sometimes been criticized because it appears not to include flushing by seawater, but this is accounted for implicitly because the average estuary salinity used in the calculation reflects all the processes that bring seawater into the estuary, including gravitational circulation and tidal processes. The model relies on measurable salinity differences among water masses and so must be used for estuaries with substantial freshwater inflow. Tidal prism models are based on flushing by flood tide inflow and ignore seawater inflow due to gravitational circulation. These models should only be applied to estuaries with weak or nonexistent gravitational circulation, which are generally those with little freshwater inflow. Using a framework that is less ambioguous and more directly applicable to the estimation of turnover times than those used previously, this paper critically examines the application of tidal prism models in well-mixed estuaries with complete tidal exchange, partial ebb return, or incomplete flood mixing and in partially mixed estuaries. Problems with self-consistency in earlier versions of these models also apply to the budgeting procedure used by the LOICZ (Land-Ocean Interactions in the Coastal Zone) program. Although freshwater fraction and tidal prism models are different approaches to estimating turnover times in systems with very different characteristics, consistent derivation shows that these models have much in common with each other and that they yield equivalent values that can be used to make comparisons across systems.     

Flushing of dense, hypoxic water from a cavity of the Swan River estuary, Western Australia

Flushing of dense water from cavities of the upper reaches of the Swan River estuary in Western Australia was investigated using measured salinity and dissolved oxygen profiles and a two-dimensional, laterally averaged hydrodynamic model (TISAT). Seasonal flushing of dense, hypoxic bottom waters from a relatively deep site took place over ∼3 days at the onset of winter in 1994. Model simulations of the purging of this dense water did not correspond closely with changes in the densimetric Froude number. Purging, expressed as depth of the halocline as a fraction of the total cavity depth, occurred when the simulated mean horizontal velocity at 2 m depth (top of cavity) changed from negative to strongly positive, indicating arrest of upstream flow and continuous downstream flow. This corresponded to freshwater discharge of about 50 m³ s⁻¹. Oxygen depletion of bottom waters was closely related to stratification. Oxygen dynamics at the onset of winter river flow was analysed using an exponential decay model, assuning that there was no net inflow or outflow across the halocline and thus no vertical transport of oxygen during a period of strong stratification. The rate constant for oxygen decay at Ron Courtney Island (RCI) was estimated to be 0.232 d⁻¹ for this period. Bottom waters at RCI declined to less than 1 mg 1⁻¹ prior to complete flushing through increased river flows. This study provided in sights to how freshwater flows may be allocated to maintain suitable oxygen levels in the bottom waters of estuarine cavities.     

Seasonal and Inter-annual Patterns in Primary Production,Respiration, and Net Ecosystem Metabolism in Three Estuaries in the Northeast Gulf of Mexico

Measurements of primary production and respiration provide fundamental information about the trophic status of aquatic ecosystems, yet such measurements are logistically difficult and expensive to sustain as part of long-term monitoring programs. However, ecosystem metabolism parameters can be inferred from high frequency water quality data collections using autonomous logging instruments. For this study, we analyzed such time series datasets from three Gulf of Mexico estuaries: Grand Bay, MS; Weeks Bay, AL; and Apalachicola Bay, FL. Data were acquired from NOAA's National Estuarine Research Reserve System Wide Monitoring Program and used to calculate gross primary production (GPP), ecosystem respiration (ER), and net ecosystem metabolism (NEM) using Odum's open water method. The three systems represent a diversity of estuaries typical of the Gulf of Mexico region, varying by as much as two orders of magnitude in key physical characteristics, such as estuarine area, watershed area, freshwater flow, and nutrient loading. In all three systems, GPP and ER displayed strong seasonality, peaking in summer and being lowest during winter. Peak rates of GPP and ER exceeded 200 mmol O₂?m^?2 day^?1 in all three estuaries. To our knowledge, this is the first study examining long-term trends in rates of GPP, ER, and NEM in estuaries. Variability in metabolism tended to be small among sites within each estuary. Nitrogen loading was highest in Weeks Bay, almost two times greater than that in Apalachicola Bay and 35 times greater than to Grand Bay. These differences in nitrogen loading were reflected in average annual GPP rates, which ranged from 825 g C m^?2 year^?1 in Weeks Bay to 401 g C m^?2 year^?1 for Apalachicola Bay and 377 g C m^?2 year^?1 in Grand Bay. Despite the strong inter-annual patterns in freshwater flow and salinity, variability in metabolic rates was low, perhaps reflecting shifts in the relative importance of benthic and phytoplankton productivity, during different flow regimes. The advantage of the open water method is that it uses readily available and cost-effective sonde monitoring technology to estimate these fundamental estuarine processes, thus providing a potential means for examining long-term trends in net carbon balance. It also provides a historical benchmark for comparison to ongoing and future monitoring focused on documenting the effect of human activities on the coastal zone.     

Nutrient biogeochemistry in an upwelling-influenced estuary of the Pacific northwest (Tillamook Bay,Oregon, USA)

Tillamook Bay, Oregon, is a drowned river estuary that receives freshwater input from 5 rivers and exchanges ocean water through a single channel. Similar to other western United States estuaries, the bay exhibits a strong seasonal change in river discharge in which there is a pronounced winter maximum and summer minimum in precipitation and runoff. The behavior of major inorganic nutrients (phosphorus, nitrogen, and silica) within the watershed is examined over seasonal cycles and under a range of river discharge conditions for October 1997–December 1999. Monthly and seasonal sampling stations include transects extending from the mouth of each river to the mouth of the estuary as well as 6–10 sites upstream along each of the 5 major rivers. Few studies have examined nutrient cycling in Pacific Northwest estuaries. This study evaluates the distributions of inorganic nutrients to understand the net processes occurring within this estuary. Based upon this approach, we hypothesize that nutrient behavior in the Tillamook Bay estuary can be explained by two dominant factors: freshwater flushing time and biological uptake and regeneration. Superimposed on these two processes is seasonal variability in nutrient concentrations of coastal waters via upwelling. Freshwater flushing time determines the amount of time for the uptake of nutrients by phytoplankton, for exchange with suspended particles, and for interaction with the sediments. Seasonal coastal upwelling controls the timing and extent of oceanic delivery of nutrients to the estuary. We suggest that benthic regeneration of nutrients is also an important process within the estuary occurring seasonally according to the flushing characteristics of the estuary. Silicic acid, nitrate, and NH₄ ⁺ supply to the bay appears to be dominated by riverine input. PO₄ ⁻³ supply is dominated by river input during periods of high river flow (winter months) with oceanic input via upwelling and tidal exchange important during other times (spring, summer, and fall months). Departures from conservative mixing indicate that internal estuarine sources of dissolved inorganic phosphorus and nitrogen are also significant over an annual cycle.     

Classifying coastal waters: Current necessity and historical perspective

Coastal ecosystems are ecologically and commercially valuable, productive habitats that are experiencing escalating compromises of their structural and functional integrity. The Clean Water Act (USC 1972) requires identification of impaired water bodies and determination of the causes of impairment. Classification simplifies these determinations, because estuaries within a class are more likely to respond similarly to particular stressors. We reviewed existing classification systems for their applicability to grouping coastal marine and Great Lakes water bodies based on their responses to aquatic stressors, including nutrients, toxic substances, suspended sediments, habitat alteration, and combinations of stressors. Classification research historically addressed terrestrial and freshwater habitats rather than coastal habitats. Few efforts focused on stressor response, although many well-researched classification frameworks provide information pertinent to stressor response. Early coastal classifications relied on physical and hydrological properties, including geomorphology, general circulation patterns, and salinity. More recent classifications sort ecosystems into a few broad types and may integrate physical and biological factors. Among current efforts are those designed for conservation of sensitive habitats based on ecological processes that support patterns of biological diversity. Physical factors, including freshwater inflow, residence time, and flushing rates, affect sensitivity to stressors. Biological factors, such as primary production, grazing rates, and mineral cycling, also need to be considered in classification. We evaluate each existing classification system with respect to objectives, defining factors, extent of spatial and temporal applicability, existing sources of data, and relevance to aquatic stressors. We also consider classification methods in a generic sense and discuss their strengths and weaknesses for our purposes. Although few existing classifications are based on responses to stressors, may well-researched paradigms provide important information for improving our capabilities for classification, as an investigative and predictive management tool.